RNA–Protein interactions for RNA: ENST00000636172.1

CLN3-245, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,536 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-245ENST00000636172 NISCHQ9Y2I1 1504 aa48.39■■■■■ 5.34
CLN3-245ENST00000636172 CCDC180Q9P1Z9 1646 aa42.61■■■■■ 4.41
CLN3-245ENST00000636172 ABCC9O60706 1549 aa40.84■■■■■ 4.13
CLN3-245ENST00000636172 ZCCHC6Q5VYS8 1495 aaKnown RBP40.51■■■■■ 4.08
CLN3-245ENST00000636172 DCAF1Q9Y4B6 1507 aa40.05■■■■■ 4
CLN3-245ENST00000636172 DCAF8L2P0C7V8 631 aa40.02■■■■■ 4
CLN3-245ENST00000636172 MYO15BQ96JP2 1530 aa39.86■■■■□ 3.97
CLN3-245ENST00000636172 NACADO15069 1562 aa39.82■■■■□ 3.96
CLN3-245ENST00000636172 RB1CC1Q8TDY2 1594 aa39.65■■■■□ 3.94
CLN3-245ENST00000636172 SCRIBQ14160 1630 aa38.99■■■■□ 3.83
CLN3-245ENST00000636172 UNC13AQ9UPW8 1703 aa38.85■■■■□ 3.81
CLN3-245ENST00000636172 SHROOM4Q9ULL8 1493 aa38.82■■■■□ 3.81
CLN3-245ENST00000636172 BICRAQ9NZM4 1560 aa38.48■■■■□ 3.75
CLN3-245ENST00000636172 PABPN1Q86U42 306 aaKnown RBP eCLIP38.31■■■■□ 3.72
CLN3-245ENST00000636172 DNAJC5BQ9UF47 199 aa37.69■■■■□ 3.62
CLN3-245ENST00000636172 CECR2Q9BXF3 1484 aa37.62■■■■□ 3.61
CLN3-245ENST00000636172 BAZ1AQ9NRL2 1556 aaPredicted RBP37.42■■■■□ 3.58
CLN3-245ENST00000636172 SMARCA4P51532 1647 aa37.37■■■■□ 3.57
CLN3-245ENST00000636172 EIF4G1Q04637 1599 aaKnown RBP37.36■■■■□ 3.57
CLN3-245ENST00000636172 MROH2BQ7Z745 1585 aa37.33■■■■□ 3.57
CLN3-245ENST00000636172 RSF1Q96T23 1441 aaPredicted RBP37.22■■■■□ 3.55
CLN3-245ENST00000636172 WIZO95785 1651 aa36.99■■■■□ 3.51
CLN3-245ENST00000636172 CC2D2AQ9P2K1 1620 aa36.98■■■■□ 3.51
CLN3-245ENST00000636172 PEG3Q9GZU2 1588 aa36.97■■■■□ 3.51
CLN3-245ENST00000636172 SUPT5HO00267 1087 aaKnown RBP36.95■■■■□ 3.51
CLN3-245ENST00000636172 ATAD2BQ9ULI0 1458 aa36.92■■■■□ 3.5
CLN3-245ENST00000636172 SMARCA2P51531 1590 aa36.89■■■■□ 3.5
CLN3-245ENST00000636172 NCAPD3P42695 1498 aa36.73■■■■□ 3.47
CLN3-245ENST00000636172 HMGXB3Q12766 1538 aa36.66■■■■□ 3.46
CLN3-245ENST00000636172 BAZ1BQ9UIG0 1483 aaKnown RBP36.66■■■■□ 3.46
CLN3-245ENST00000636172 TOP2AP11388 1531 aaKnown RBP36.62■■■■□ 3.45
CLN3-245ENST00000636172 CCDC88BA6NC98 1476 aa36.19■■■■□ 3.38
CLN3-245ENST00000636172 CFTRP13569 1480 aa35.71■■■■□ 3.31
CLN3-245ENST00000636172 CADPSQ9ULU8 1353 aa35.71■■■■□ 3.31
CLN3-245ENST00000636172 NESP48681 1621 aa35.63■■■■□ 3.29
CLN3-245ENST00000636172 LAMC3Q9Y6N6 1575 aa35.62■■■■□ 3.29
CLN3-245ENST00000636172 PRDM2Q13029 1718 aa35.55■■■■□ 3.28
CLN3-245ENST00000636172 FANCD2Q9BXW9 1451 aa35.33■■■■□ 3.25
CLN3-245ENST00000636172 PDS5BQ9NTI5 1447 aa35.32■■■■□ 3.25
CLN3-245ENST00000636172 KIF21AQ7Z4S6 1674 aa35.24■■■■□ 3.23
CLN3-245ENST00000636172 CEP164Q9UPV0 1460 aa35.19■■■■□ 3.22
CLN3-245ENST00000636172 ABCC8Q09428 1581 aa35.18■■■■□ 3.22
CLN3-245ENST00000636172 ERCC6Q03468 1493 aa35.09■■■■□ 3.21
CLN3-245ENST00000636172 WRNQ14191 1432 aaPredicted RBP eCLIP35.05■■■■□ 3.2
CLN3-245ENST00000636172 CHIC1Q5VXU3 224 aa35.03■■■■□ 3.2
CLN3-245ENST00000636172 CUX1P39880 1505 aa34.97■■■■□ 3.19
CLN3-245ENST00000636172 SYNJ1O43426 1573 aa34.96■■■■□ 3.19
CLN3-245ENST00000636172 MRC2Q9UBG0 1479 aa34.94■■■■□ 3.18
CLN3-245ENST00000636172 URB2Q14146 1524 aaKnown RBP34.94■■■■□ 3.18
CLN3-245ENST00000636172 DNMBPQ6XZF7 1577 aa34.9■■■■□ 3.18
CLN3-245ENST00000636172 TOP2BQ02880 1626 aa34.89■■■■□ 3.18
CLN3-245ENST00000636172 BIVM-ERCC5R4GMW8 1640 aa34.89■■■■□ 3.18
CLN3-245ENST00000636172 THOC2Q8NI27 1593 aaKnown RBP34.89■■■■□ 3.18
CLN3-245ENST00000636172 TOPBP1Q92547 1522 aa34.87■■■■□ 3.17
CLN3-245ENST00000636172 TRIM41Q8WV44 630 aa34.83■■■■□ 3.17
CLN3-245ENST00000636172 WDR62O43379 1518 aa34.82■■■■□ 3.16
CLN3-245ENST00000636172 CUX2O14529 1486 aa34.69■■■■□ 3.14
CLN3-245ENST00000636172 FGD5Q6ZNL6 1462 aa34.69■■■■□ 3.14
CLN3-245ENST00000636172 POLA1P09884 1462 aaPredicted RBP34.64■■■■□ 3.14
CLN3-245ENST00000636172 RAD54L2Q9Y4B4 1467 aa34.49■■■■□ 3.11
CLN3-245ENST00000636172 SOGA1O94964 1423 aa34.49■■■■□ 3.11
CLN3-245ENST00000636172 TARBP1Q13395 1621 aaKnown RBP34.44■■■■□ 3.1
CLN3-245ENST00000636172 IFT140Q96RY7 1462 aa34.39■■■■□ 3.1
CLN3-245ENST00000636172 WDR97A6NE52 1622 aa34.39■■■■□ 3.1
CLN3-245ENST00000636172 ABCA10Q8WWZ4 1543 aa34.38■■■■□ 3.09
CLN3-245ENST00000636172 DNAJC5Q9H3Z4 198 aa34.36■■■■□ 3.09
CLN3-245ENST00000636172 RUSC2Q8N2Y8 1516 aa34.27■■■■□ 3.08
CLN3-245ENST00000636172 KIF27Q86VH2 1401 aa34.22■■■■□ 3.07
CLN3-245ENST00000636172 ZNF608Q9ULD9 1512 aaPredicted RBP34.21■■■■□ 3.07
CLN3-245ENST00000636172 TDRD9Q8NDG6 1382 aaKnown RBP34.2■■■■□ 3.06
CLN3-245ENST00000636172 ABCA5Q8WWZ7 1642 aa34.2■■■■□ 3.06
CLN3-245ENST00000636172 EEA1Q15075 1411 aa34.16■■■■□ 3.06
CLN3-245ENST00000636172 FAM9AQ8IZU1 332 aaPredicted RBP34.13■■■■□ 3.05
CLN3-245ENST00000636172 EIF4G3O43432 1585 aaKnown RBP34.13■■■■□ 3.05
CLN3-245ENST00000636172 AQRO60306 1485 aaKnown RBP eCLIP34.12■■■■□ 3.056e-6■■■■□ 25.1
CLN3-245ENST00000636172 GAPVD1Q14C86 1478 aa34.11■■■■□ 3.05
CLN3-245ENST00000636172 PBRM1Q86U86 1689 aa34.03■■■■□ 3.04
CLN3-245ENST00000636172 IGF1RP08069 1367 aa34■■■■□ 3.03
CLN3-245ENST00000636172 CSRNP3Q8WYN3 585 aa33.99■■■■□ 3.03
CLN3-245ENST00000636172 ERICH3Q5RHP9 1530 aa33.98■■■■□ 3.03
CLN3-245ENST00000636172 GRIN2BQ13224 1484 aa33.97■■■■□ 3.03
CLN3-245ENST00000636172 CUL7Q14999 1698 aa33.86■■■■□ 3.01
CLN3-245ENST00000636172 SNAPC4Q5SXM2 1469 aa33.83■■■■□ 3.01
CLN3-245ENST00000636172 PRXQ9BXM0 1461 aa33.83■■■■□ 3.01
CLN3-245ENST00000636172 CARMIL1Q5VZK9 1371 aa33.8■■■■□ 3
CLN3-245ENST00000636172 ADAMTS12P58397 1594 aa33.8■■■■□ 3
CLN3-245ENST00000636172 KIF21BO75037 1637 aa33.79■■■■□ 3
CLN3-245ENST00000636172 MAGI1Q96QZ7 1491 aaPredicted RBP33.79■■■■□ 3
CLN3-245ENST00000636172 FHAD1B1AJZ9 1412 aa33.74■■■□□ 2.99
CLN3-245ENST00000636172 RAPGEF2Q9Y4G8 1499 aa33.71■■■□□ 2.99
CLN3-245ENST00000636172 SYNJ2O15056 1496 aa33.65■■■□□ 2.98
CLN3-245ENST00000636172 GOLGA3Q08378 1498 aa33.65■■■□□ 2.98
CLN3-245ENST00000636172 EHMT2Q96KQ7 1210 aa33.63■■■□□ 2.97
CLN3-245ENST00000636172 LOC105371045A0A1W2PR82 267 aa33.62■■■□□ 2.97
CLN3-245ENST00000636172 GRIN2AQ12879 1464 aa33.56■■■□□ 2.96
CLN3-245ENST00000636172 CHD1O14646 1710 aa33.53■■■□□ 2.96
CLN3-245ENST00000636172 CHMP7Q8WUX9 453 aaPredicted RBP33.53■■■□□ 2.96
CLN3-245ENST00000636172 FBLN2P98095 1184 aa33.49■■■□□ 2.95
CLN3-245ENST00000636172 UBTFP17480 764 aaKnown RBP33.45■■■□□ 2.95
CLN3-245ENST00000636172 TNIKQ9UKE5 1360 aa33.38■■■□□ 2.93
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms