RNA–Protein interactions for RNA: ENST00000406659.3

DNMT3A-206, Transcript of DNA methyltransferase 3 alpha, humanhuman

TSL 1 (best) BASIC

Gene DNMT3A, Length 1,775 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DNMT3A-206ENST00000406659 NISCHQ9Y2I1 1504 aa54.2■■■■■ 6.27
DNMT3A-206ENST00000406659 CCDC180Q9P1Z9 1646 aa46.87■■■■■ 5.09
DNMT3A-206ENST00000406659 ZCCHC6Q5VYS8 1495 aaKnown RBP45.62■■■■■ 4.89
DNMT3A-206ENST00000406659 SHROOM4Q9ULL8 1493 aa44.88■■■■■ 4.78
DNMT3A-206ENST00000406659 DCAF8L2P0C7V8 631 aa44.84■■■■■ 4.77
DNMT3A-206ENST00000406659 DCAF1Q9Y4B6 1507 aa44.73■■■■■ 4.75
DNMT3A-206ENST00000406659 ABCC9O60706 1549 aa43.96■■■■■ 4.63
DNMT3A-206ENST00000406659 MYO15BQ96JP2 1530 aa43.93■■■■■ 4.62
DNMT3A-206ENST00000406659 NACADO15069 1562 aa43.56■■■■■ 4.56
DNMT3A-206ENST00000406659 SUPT5HO00267 1087 aaKnown RBP43.52■■■■■ 4.56
DNMT3A-206ENST00000406659 SCRIBQ14160 1630 aa43.35■■■■■ 4.53
DNMT3A-206ENST00000406659 RB1CC1Q8TDY2 1594 aa43.07■■■■■ 4.48
DNMT3A-206ENST00000406659 RSF1Q96T23 1441 aaPredicted RBP42.33■■■■■ 4.37
DNMT3A-206ENST00000406659 UNC13AQ9UPW8 1703 aa42.21■■■■■ 4.35
DNMT3A-206ENST00000406659 CECR2Q9BXF3 1484 aa42.13■■■■■ 4.33
DNMT3A-206ENST00000406659 MROH2BQ7Z745 1585 aa41.94■■■■■ 4.3
DNMT3A-206ENST00000406659 CHIC1Q5VXU3 224 aa41.91■■■■■ 4.3
DNMT3A-206ENST00000406659 BAZ1AQ9NRL2 1556 aaPredicted RBP41.79■■■■■ 4.28
DNMT3A-206ENST00000406659 BICRAQ9NZM4 1560 aa41.75■■■■■ 4.27
DNMT3A-206ENST00000406659 PABPN1Q86U42 306 aaKnown RBP eCLIP41.67■■■■■ 4.26
DNMT3A-206ENST00000406659 WIZO95785 1651 aa41.64■■■■■ 4.26
DNMT3A-206ENST00000406659 SMARCA4P51532 1647 aa41.53■■■■■ 4.24
DNMT3A-206ENST00000406659 TOP2AP11388 1531 aaKnown RBP41.17■■■■■ 4.18
DNMT3A-206ENST00000406659 PEG3Q9GZU2 1588 aa40.91■■■■■ 4.14
DNMT3A-206ENST00000406659 CCDC88BA6NC98 1476 aa40.83■■■■■ 4.13
DNMT3A-206ENST00000406659 TRIM41Q8WV44 630 aa40.82■■■■■ 4.13
DNMT3A-206ENST00000406659 SMARCA2P51531 1590 aa40.81■■■■■ 4.12
DNMT3A-206ENST00000406659 ATAD2BQ9ULI0 1458 aa40.71■■■■■ 4.11
DNMT3A-206ENST00000406659 EIF4G1Q04637 1599 aaKnown RBP40.67■■■■■ 4.1
DNMT3A-206ENST00000406659 BAZ1BQ9UIG0 1483 aaKnown RBP40.55■■■■■ 4.08
DNMT3A-206ENST00000406659 LOC105371045A0A1W2PR82 267 aa40.41■■■■■ 4.06
DNMT3A-206ENST00000406659 NCAPD3P42695 1498 aa40.22■■■■■ 4.03
DNMT3A-206ENST00000406659 ABCC8Q09428 1581 aa40.19■■■■■ 4.02
DNMT3A-206ENST00000406659 HMGXB3Q12766 1538 aa40.18■■■■■ 4.02
DNMT3A-206ENST00000406659 FAM9AQ8IZU1 332 aaPredicted RBP40.18■■■■■ 4.02
DNMT3A-206ENST00000406659 WRNQ14191 1432 aaPredicted RBP eCLIP39.84■■■■□ 3.97
DNMT3A-206ENST00000406659 CC2D2AQ9P2K1 1620 aa39.72■■■■□ 3.95
DNMT3A-206ENST00000406659 EHMT2Q96KQ7 1210 aa39.67■■■■□ 3.94
DNMT3A-206ENST00000406659 SYNJ1O43426 1573 aa39.62■■■■□ 3.93
DNMT3A-206ENST00000406659 SOGA1O94964 1423 aa39.59■■■■□ 3.93
DNMT3A-206ENST00000406659 EEA1Q15075 1411 aa39.57■■■■□ 3.93
DNMT3A-206ENST00000406659 CFTRP13569 1480 aa39.52■■■■□ 3.92
DNMT3A-206ENST00000406659 RUSC2Q8N2Y8 1516 aa39.4■■■■□ 3.9
DNMT3A-206ENST00000406659 CSRNP3Q8WYN3 585 aa39.4■■■■□ 3.9
DNMT3A-206ENST00000406659 TOP2BQ02880 1626 aa39.39■■■■□ 3.9
DNMT3A-206ENST00000406659 BIVM-ERCC5R4GMW8 1640 aa39.31■■■■□ 3.88
DNMT3A-206ENST00000406659 CADPSQ9ULU8 1353 aa39.29■■■■□ 3.88
DNMT3A-206ENST00000406659 PRDM2Q13029 1718 aa39.29■■■■□ 3.88
DNMT3A-206ENST00000406659 PCGF6Q9BYE7 350 aa39.24■■■■□ 3.87
DNMT3A-206ENST00000406659 CUX1P39880 1505 aa39.17■■■■□ 3.86
DNMT3A-206ENST00000406659 TNIKQ9UKE5 1360 aa39.1■■■■□ 3.85
DNMT3A-206ENST00000406659 GOLGA3Q08378 1498 aa39.09■■■■□ 3.85
DNMT3A-206ENST00000406659 UBTFP17480 764 aaKnown RBP39.03■■■■□ 3.84
DNMT3A-206ENST00000406659 TRIM26Q12899 539 aaPredicted RBP39.03■■■■□ 3.84
DNMT3A-206ENST00000406659 CEP164Q9UPV0 1460 aa39.02■■■■□ 3.84
DNMT3A-206ENST00000406659 KIF21BO75037 1637 aa39■■■■□ 3.83
DNMT3A-206ENST00000406659 CEP162Q5TB80 1403 aa38.95■■■■□ 3.83
DNMT3A-206ENST00000406659 FANCD2Q9BXW9 1451 aa38.87■■■■□ 3.81
DNMT3A-206ENST00000406659 NESP48681 1621 aa38.78■■■■□ 3.8
DNMT3A-206ENST00000406659 KIF27Q86VH2 1401 aa38.78■■■■□ 3.8
DNMT3A-206ENST00000406659 LAMC3Q9Y6N6 1575 aa38.74■■■■□ 3.79
DNMT3A-206ENST00000406659 RAPGEF2Q9Y4G8 1499 aa38.73■■■■□ 3.79
DNMT3A-206ENST00000406659 FGD5Q6ZNL6 1462 aa38.65■■■■□ 3.78
DNMT3A-206ENST00000406659 DNAJC5BQ9UF47 199 aa38.64■■■■□ 3.78
DNMT3A-206ENST00000406659 PRXQ9BXM0 1461 aa38.63■■■■□ 3.78
DNMT3A-206ENST00000406659 ERICH3Q5RHP9 1530 aa38.62■■■■□ 3.77
DNMT3A-206ENST00000406659 DNMBPQ6XZF7 1577 aa38.59■■■■□ 3.77
DNMT3A-206ENST00000406659 HRCP23327 699 aa38.58■■■■□ 3.77
DNMT3A-206ENST00000406659 CUX2O14529 1486 aa38.56■■■■□ 3.76
DNMT3A-206ENST00000406659 PPARGC1BQ86YN6 1023 aaKnown RBP38.53■■■■□ 3.76
DNMT3A-206ENST00000406659 CLIP1P30622 1438 aa38.52■■■■□ 3.76
DNMT3A-206ENST00000406659 TOPBP1Q92547 1522 aa38.5■■■■□ 3.75
DNMT3A-206ENST00000406659 PDS5BQ9NTI5 1447 aa38.49■■■■□ 3.75
DNMT3A-206ENST00000406659 IGF1RP08069 1367 aa38.39■■■■□ 3.74
DNMT3A-206ENST00000406659 POLA1P09884 1462 aaPredicted RBP38.36■■■■□ 3.73
DNMT3A-206ENST00000406659 URB2Q14146 1524 aaKnown RBP38.33■■■■□ 3.73
DNMT3A-206ENST00000406659 RAD54L2Q9Y4B4 1467 aa38.3■■■■□ 3.72
DNMT3A-206ENST00000406659 ABCA10Q8WWZ4 1543 aa38.29■■■■□ 3.72
DNMT3A-206ENST00000406659 RANGAP1P46060 587 aaPredicted RBP38.29■■■■□ 3.72
DNMT3A-206ENST00000406659 KIF21AQ7Z4S6 1674 aa38.25■■■■□ 3.71
DNMT3A-206ENST00000406659 VPS8Q8N3P4 1428 aa38.23■■■■□ 3.71
DNMT3A-206ENST00000406659 CARMIL1Q5VZK9 1371 aa38.23■■■■□ 3.71
DNMT3A-206ENST00000406659 TTBK1Q5TCY1 1321 aaPredicted RBP38.11■■■■□ 3.69
DNMT3A-206ENST00000406659 WDR97A6NE52 1622 aa38.04■■■■□ 3.68
DNMT3A-206ENST00000406659 ARAP1Q96P48 1450 aa38.02■■■■□ 3.68
DNMT3A-206ENST00000406659 APLP2Q06481 763 aa38.02■■■■□ 3.68
DNMT3A-206ENST00000406659 CUL7Q14999 1698 aa37.95■■■■□ 3.67
DNMT3A-206ENST00000406659 MRC2Q9UBG0 1479 aa37.94■■■■□ 3.66
DNMT3A-206ENST00000406659 TDRD9Q8NDG6 1382 aaKnown RBP37.91■■■■□ 3.66
DNMT3A-206ENST00000406659 ARHGAP35Q9NRY4 1499 aa37.89■■■■□ 3.66
DNMT3A-206ENST00000406659 ABCA5Q8WWZ7 1642 aa37.89■■■■□ 3.66
DNMT3A-206ENST00000406659 GAPVD1Q14C86 1478 aa37.86■■■■□ 3.65
DNMT3A-206ENST00000406659 TARBP1Q13395 1621 aaKnown RBP37.83■■■■□ 3.65
DNMT3A-206ENST00000406659 ZEB1P37275 1124 aaPredicted RBP37.8■■■■□ 3.64
DNMT3A-206ENST00000406659 WDR62O43379 1518 aa37.66■■■■□ 3.62
DNMT3A-206ENST00000406659 CTTNBP2Q8WZ74 1663 aa37.63■■■■□ 3.62
DNMT3A-206ENST00000406659 ERCC6Q03468 1493 aa37.63■■■■□ 3.62
DNMT3A-206ENST00000406659 IFT140Q96RY7 1462 aa37.57■■■■□ 3.61
DNMT3A-206ENST00000406659 PBRM1Q86U86 1689 aa37.55■■■■□ 3.6
DNMT3A-206ENST00000406659 AQRO60306 1485 aaKnown RBP eCLIP37.54■■■■□ 3.6
Retrieved 100 of 20,778 RNA–protein pairs in 9.9 ms