RNA–Protein interactions for RNA: ENST00000321117.9

DNMT3A-202, Transcript of DNA methyltransferase 3 alpha, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene DNMT3A, Length 4,279 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DNMT3A-202ENST00000321117 NISCHQ9Y2I1 1504 aa23.54■■□□□ 1.36
DNMT3A-202ENST00000321117 SUPT5HO00267 1087 aaKnown RBP21.54■■□□□ 1.04
DNMT3A-202ENST00000321117 SHROOM4Q9ULL8 1493 aa21.47■■□□□ 1.03
DNMT3A-202ENST00000321117 DCAF8L2P0C7V8 631 aa21.42■■□□□ 1.02
DNMT3A-202ENST00000321117 PCGF6Q9BYE7 350 aa20.68■□□□□ 0.9
DNMT3A-202ENST00000321117 HRCP23327 699 aa20.44■□□□□ 0.86
DNMT3A-202ENST00000321117 CHIC1Q5VXU3 224 aa20.34■□□□□ 0.85
DNMT3A-202ENST00000321117 EHMT2Q96KQ7 1210 aa20.17■□□□□ 0.82
DNMT3A-202ENST00000321117 FAM9AQ8IZU1 332 aaPredicted RBP20.07■□□□□ 0.8
DNMT3A-202ENST00000321117 ZEB1P37275 1124 aaPredicted RBP20.03■□□□□ 0.8
DNMT3A-202ENST00000321117 PPARGC1BQ86YN6 1023 aaKnown RBP20.01■□□□□ 0.79
DNMT3A-202ENST00000321117 LOC105371045A0A1W2PR82 267 aa20■□□□□ 0.79
DNMT3A-202ENST00000321117 TRIM26Q12899 539 aaPredicted RBP19.98■□□□□ 0.79
DNMT3A-202ENST00000321117 TRIM41Q8WV44 630 aa19.95■□□□□ 0.78
DNMT3A-202ENST00000321117 ZCCHC6Q5VYS8 1495 aaKnown RBP19.79■□□□□ 0.76
DNMT3A-202ENST00000321117 PELP1Q8IZL8 1130 aaKnown RBP19.75■□□□□ 0.75
DNMT3A-202ENST00000321117 MYO15BQ96JP2 1530 aa19.64■□□□□ 0.74
DNMT3A-202ENST00000321117 CCER1Q8TC90 406 aaPredicted RBP19.64■□□□□ 0.73
DNMT3A-202ENST00000321117 TTBK1Q5TCY1 1321 aaPredicted RBP19.59■□□□□ 0.73
DNMT3A-202ENST00000321117 CENPBP07199 599 aaPredicted RBP19.54■□□□□ 0.72
DNMT3A-202ENST00000321117 DCAF1Q9Y4B6 1507 aa19.53■□□□□ 0.72
DNMT3A-202ENST00000321117 CCDC180Q9P1Z9 1646 aa19.45■□□□□ 0.7
DNMT3A-202ENST00000321117 APLP2Q06481 763 aa19.34■□□□□ 0.69
DNMT3A-202ENST00000321117 UBTFP17480 764 aaKnown RBP19.26■□□□□ 0.67
DNMT3A-202ENST00000321117 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.25■□□□□ 0.67
DNMT3A-202ENST00000321117 YTHDC1Q96MU7 727 aaKnown RBP19.15■□□□□ 0.66
DNMT3A-202ENST00000321117 DIEXFQ68CQ4 756 aaKnown RBP19.11■□□□□ 0.65
DNMT3A-202ENST00000321117 MYT1Q01538 1121 aa19.07■□□□□ 0.64
DNMT3A-202ENST00000321117 RANGAP1P46060 587 aaPredicted RBP19.06■□□□□ 0.64
DNMT3A-202ENST00000321117 ACIN1Q9UKV3 1341 aaKnown RBP18.95■□□□□ 0.62
DNMT3A-202ENST00000321117 SCRIBQ14160 1630 aa18.95■□□□□ 0.62
DNMT3A-202ENST00000321117 GTF3C3Q9Y5Q9 886 aa18.94■□□□□ 0.62
DNMT3A-202ENST00000321117 SCAF1Q9H7N4 1312 aaKnown RBP18.92■□□□□ 0.62
DNMT3A-202ENST00000321117 HNRNPUL2Q1KMD3 747 aaKnown RBP18.91■□□□□ 0.62
DNMT3A-202ENST00000321117 RSF1Q96T23 1441 aaPredicted RBP18.9■□□□□ 0.62
DNMT3A-202ENST00000321117 ABCC9O60706 1549 aa18.83■□□□□ 0.61
DNMT3A-202ENST00000321117 ZNF316A6NFI3 1004 aaPredicted RBP18.77■□□□□ 0.59
DNMT3A-202ENST00000321117 NEUROD1Q13562 356 aa18.75■□□□□ 0.59
DNMT3A-202ENST00000321117 CSRNP3Q8WYN3 585 aa18.67■□□□□ 0.58
DNMT3A-202ENST00000321117 RB1CC1Q8TDY2 1594 aa18.63■□□□□ 0.57
DNMT3A-202ENST00000321117 ITGAEP38570 1179 aa18.54■□□□□ 0.56
DNMT3A-202ENST00000321117 NEFLP07196 543 aa18.52■□□□□ 0.56
DNMT3A-202ENST00000321117 ATP1B4Q9UN42 357 aaPredicted RBP18.52■□□□□ 0.55
DNMT3A-202ENST00000321117 CECR2Q9BXF3 1484 aa18.45■□□□□ 0.54
DNMT3A-202ENST00000321117 CEP162Q5TB80 1403 aa18.44■□□□□ 0.54
DNMT3A-202ENST00000321117 PABPN1Q86U42 306 aaKnown RBP eCLIP18.44■□□□□ 0.54
DNMT3A-202ENST00000321117 MIER1Q8N108 512 aa18.37■□□□□ 0.53
DNMT3A-202ENST00000321117 ERICH6Q7L0X2 663 aa18.35■□□□□ 0.53
DNMT3A-202ENST00000321117 NACADO15069 1562 aa18.33■□□□□ 0.53
DNMT3A-202ENST00000321117 TNIKQ9UKE5 1360 aa18.33■□□□□ 0.53
DNMT3A-202ENST00000321117 MROH2BQ7Z745 1585 aa18.33■□□□□ 0.52
DNMT3A-202ENST00000321117 EEA1Q15075 1411 aa18.32■□□□□ 0.52
DNMT3A-202ENST00000321117 GOLGA3Q08378 1498 aa18.26■□□□□ 0.51
DNMT3A-202ENST00000321117 CLIP1P30622 1438 aa18.24■□□□□ 0.51
DNMT3A-202ENST00000321117 BAZ1AQ9NRL2 1556 aaPredicted RBP18.22■□□□□ 0.51
DNMT3A-202ENST00000321117 CLSPNQ9HAW4 1339 aa18.22■□□□□ 0.51
DNMT3A-202ENST00000321117 BCANQ96GW7 911 aa18.19■□□□□ 0.5
DNMT3A-202ENST00000321117 SOGA1O94964 1423 aa18.19■□□□□ 0.5
DNMT3A-202ENST00000321117 FAM50AQ14320 339 aaKnown RBP18.17■□□□□ 0.5
DNMT3A-202ENST00000321117 WIZO95785 1651 aa18.16■□□□□ 0.5
DNMT3A-202ENST00000321117 CCDC88BA6NC98 1476 aa18.14■□□□□ 0.49
DNMT3A-202ENST00000321117 ABCC8Q09428 1581 aa18.14■□□□□ 0.49
DNMT3A-202ENST00000321117 WRNQ14191 1432 aaPredicted RBP eCLIP18.13■□□□□ 0.49
DNMT3A-202ENST00000321117 CEP164Q9UPV0 1460 aa18.09■□□□□ 0.49
DNMT3A-202ENST00000321117 ANP32CO43423 234 aa18.04■□□□□ 0.48
DNMT3A-202ENST00000321117 FKBP8Q14318 412 aa17.97■□□□□ 0.47
DNMT3A-202ENST00000321117 DDX10Q13206 875 aaKnown RBP17.96■□□□□ 0.47
DNMT3A-202ENST00000321117 TOP2AP11388 1531 aaKnown RBP17.95■□□□□ 0.46
DNMT3A-202ENST00000321117 VPS8Q8N3P4 1428 aa17.93■□□□□ 0.46
DNMT3A-202ENST00000321117 P3H3Q8IVL6 736 aa17.9■□□□□ 0.46
DNMT3A-202ENST00000321117 SUPT16HQ9Y5B9 1047 aaKnown RBP17.88■□□□□ 0.45
DNMT3A-202ENST00000321117 RUSC2Q8N2Y8 1516 aa17.87■□□□□ 0.45
DNMT3A-202ENST00000321117 CDK11AQ9UQ88 783 aaPredicted RBP17.83■□□□□ 0.44
DNMT3A-202ENST00000321117 POLR3GLQ9BT43 218 aa17.82■□□□□ 0.44
DNMT3A-202ENST00000321117 TRIM52Q96A61 297 aa17.81■□□□□ 0.44
DNMT3A-202ENST00000321117 BAZ1BQ9UIG0 1483 aaKnown RBP17.8■□□□□ 0.44
DNMT3A-202ENST00000321117 CNGB1Q14028 1251 aaPredicted RBP17.8■□□□□ 0.44
DNMT3A-202ENST00000321117 TONSLQ96HA7 1378 aa17.78■□□□□ 0.44
DNMT3A-202ENST00000321117 SMARCA4P51532 1647 aa17.76■□□□□ 0.43
DNMT3A-202ENST00000321117 HIRIP3Q9BW71 556 aaPredicted RBP17.75■□□□□ 0.43
DNMT3A-202ENST00000321117 CCNB3Q8WWL7 1395 aa17.73■□□□□ 0.43
DNMT3A-202ENST00000321117 SMARCA2P51531 1590 aa17.73■□□□□ 0.43
DNMT3A-202ENST00000321117 KANK4Q5T7N3 995 aaPredicted RBP17.73■□□□□ 0.43
DNMT3A-202ENST00000321117 KIF27Q86VH2 1401 aa17.72■□□□□ 0.43
DNMT3A-202ENST00000321117 HNRNPUQ00839 825 aaKnown RBP eCLIP17.72■□□□□ 0.43
DNMT3A-202ENST00000321117 ANP32EQ9BTT0 268 aa17.71■□□□□ 0.43
DNMT3A-202ENST00000321117 RAPGEF2Q9Y4G8 1499 aa17.69■□□□□ 0.42
DNMT3A-202ENST00000321117 DHX57Q6P158 1386 aaKnown RBP17.66■□□□□ 0.42
DNMT3A-202ENST00000321117 SIN3AQ96ST3 1273 aa17.65■□□□□ 0.42
DNMT3A-202ENST00000321117 TSHZ2Q9NRE2 1034 aa17.59■□□□□ 0.41
DNMT3A-202ENST00000321117 RTL5Q5HYW3 569 aaPredicted RBP17.58■□□□□ 0.4
DNMT3A-202ENST00000321117 IRX6P78412 446 aaPredicted RBP17.55■□□□□ 0.4
DNMT3A-202ENST00000321117 RAB3GAP2Q9H2M9 1393 aa17.55■□□□□ 0.4
DNMT3A-202ENST00000321117 MTUS2Q5JR59 1369 aa17.54■□□□□ 0.4
DNMT3A-202ENST00000321117 SETD5Q9C0A6 1442 aa17.53■□□□□ 0.4
DNMT3A-202ENST00000321117 FAM9BQ8IZU0 186 aa17.53■□□□□ 0.4
DNMT3A-202ENST00000321117 ZNF326Q5BKZ1 582 aaKnown RBP17.52■□□□□ 0.4
DNMT3A-202ENST00000321117 TIMELESSQ9UNS1 1208 aa17.52■□□□□ 0.39
DNMT3A-202ENST00000321117 KIF21BO75037 1637 aa17.49■□□□□ 0.39
DNMT3A-202ENST00000321117 KCNH8Q96L42 1107 aa17.49■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 194 ms