RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 NISCHQ9Y2I1 1504 aa44.45■■■■■ 4.71
CLN3-259ENST00000637551 CCDC180Q9P1Z9 1646 aa39.68■■■■□ 3.94
CLN3-259ENST00000637551 ABCC9O60706 1549 aa38.92■■■■□ 3.82
CLN3-259ENST00000637551 DNAJC5BQ9UF47 199 aa37.35■■■■□ 3.57
CLN3-259ENST00000637551 NACADO15069 1562 aa37.23■■■■□ 3.55
CLN3-259ENST00000637551 RB1CC1Q8TDY2 1594 aa37.2■■■■□ 3.55
CLN3-259ENST00000637551 MYO15BQ96JP2 1530 aa37.19■■■■□ 3.54
CLN3-259ENST00000637551 ZCCHC6Q5VYS8 1495 aaKnown RBP37.09■■■■□ 3.53
CLN3-259ENST00000637551 DCAF1Q9Y4B6 1507 aa37■■■■□ 3.51
CLN3-259ENST00000637551 DCAF8L2P0C7V8 631 aa36.68■■■■□ 3.46
CLN3-259ENST00000637551 UNC13AQ9UPW8 1703 aa36.28■■■■□ 3.4
CLN3-259ENST00000637551 PABPN1Q86U42 306 aaKnown RBP eCLIP36.13■■■■□ 3.37
CLN3-259ENST00000637551 BICRAQ9NZM4 1560 aa35.98■■■■□ 3.35
CLN3-259ENST00000637551 SHROOM4Q9ULL8 1493 aa35.95■■■■□ 3.35
CLN3-259ENST00000637551 SCRIBQ14160 1630 aa35.89■■■■□ 3.34
CLN3-259ENST00000637551 CECR2Q9BXF3 1484 aa35.16■■■■□ 3.22
CLN3-259ENST00000637551 CC2D2AQ9P2K1 1620 aa35.13■■■■□ 3.21
CLN3-259ENST00000637551 EIF4G1Q04637 1599 aaKnown RBP35.04■■■■□ 3.2
CLN3-259ENST00000637551 DNAJC5Q9H3Z4 198 aa34.91■■■■□ 3.18
CLN3-259ENST00000637551 BAZ1AQ9NRL2 1556 aaPredicted RBP34.52■■■■□ 3.12
CLN3-259ENST00000637551 SMARCA4P51532 1647 aa34.48■■■■□ 3.11
CLN3-259ENST00000637551 SMARCA2P51531 1590 aa34.33■■■■□ 3.09
CLN3-259ENST00000637551 NCAPD3P42695 1498 aa34.3■■■■□ 3.08
CLN3-259ENST00000637551 PEG3Q9GZU2 1588 aa34.3■■■■□ 3.08
CLN3-259ENST00000637551 ATAD2BQ9ULI0 1458 aa34.24■■■■□ 3.07
CLN3-259ENST00000637551 HMGXB3Q12766 1538 aa34.21■■■■□ 3.07
CLN3-259ENST00000637551 MROH2BQ7Z745 1585 aa34.15■■■■□ 3.06
CLN3-259ENST00000637551 BAZ1BQ9UIG0 1483 aaKnown RBP33.96■■■■□ 3.03
CLN3-259ENST00000637551 CUX2O14529 1486 aa33.91■■■■□ 3.02
CLN3-259ENST00000637551 RSF1Q96T23 1441 aaPredicted RBP33.82■■■■□ 3
CLN3-259ENST00000637551 WIZO95785 1651 aa33.77■■■■□ 3
CLN3-259ENST00000637551 ERCC6Q03468 1493 aa33.64■■■□□ 2.98
CLN3-259ENST00000637551 TOP2AP11388 1531 aaKnown RBP33.57■■■□□ 2.96
CLN3-259ENST00000637551 LAMC3Q9Y6N6 1575 aa33.42■■■□□ 2.94
CLN3-259ENST00000637551 CADPSQ9ULU8 1353 aa33.22■■■□□ 2.91
CLN3-259ENST00000637551 NESP48681 1621 aa33.2■■■□□ 2.91
CLN3-259ENST00000637551 PDS5BQ9NTI5 1447 aa33.12■■■□□ 2.89
CLN3-259ENST00000637551 CFTRP13569 1480 aa33.1■■■□□ 2.89
CLN3-259ENST00000637551 CCDC88BA6NC98 1476 aa33.05■■■□□ 2.88
CLN3-259ENST00000637551 THOC2Q8NI27 1593 aaKnown RBP33.03■■■□□ 2.88
CLN3-259ENST00000637551 PRDM2Q13029 1718 aa32.97■■■□□ 2.87
CLN3-259ENST00000637551 TRIM41Q8WV44 630 aa32.95■■■□□ 2.87
CLN3-259ENST00000637551 KIF21AQ7Z4S6 1674 aa32.94■■■□□ 2.86
CLN3-259ENST00000637551 FANCD2Q9BXW9 1451 aa32.81■■■□□ 2.84
CLN3-259ENST00000637551 CEP164Q9UPV0 1460 aa32.8■■■□□ 2.84
CLN3-259ENST00000637551 MRC2Q9UBG0 1479 aa32.75■■■□□ 2.83
CLN3-259ENST00000637551 SUPT5HO00267 1087 aaKnown RBP32.73■■■□□ 2.83
CLN3-259ENST00000637551 WDR62O43379 1518 aa32.7■■■□□ 2.83
CLN3-259ENST00000637551 ABCC8Q09428 1581 aa32.49■■■□□ 2.79
CLN3-259ENST00000637551 URB2Q14146 1524 aaKnown RBP32.45■■■□□ 2.78
CLN3-259ENST00000637551 DNMBPQ6XZF7 1577 aa32.35■■■□□ 2.77
CLN3-259ENST00000637551 TOPBP1Q92547 1522 aa32.31■■■□□ 2.76
CLN3-259ENST00000637551 OSCARQ8IYS5 282 aa32.25■■■□□ 2.75
CLN3-259ENST00000637551 IFT140Q96RY7 1462 aa32.16■■■□□ 2.74
CLN3-259ENST00000637551 CUX1P39880 1505 aa32.06■■■□□ 2.72
CLN3-259ENST00000637551 POLA1P09884 1462 aaPredicted RBP32.04■■■□□ 2.72
CLN3-259ENST00000637551 TARBP1Q13395 1621 aaKnown RBP32■■■□□ 2.71
CLN3-259ENST00000637551 WDR97A6NE52 1622 aa31.99■■■□□ 2.71
CLN3-259ENST00000637551 FGD5Q6ZNL6 1462 aa31.94■■■□□ 2.7
CLN3-259ENST00000637551 BIVM-ERCC5R4GMW8 1640 aa31.93■■■□□ 2.7
CLN3-259ENST00000637551 TOP2BQ02880 1626 aa31.92■■■□□ 2.7
CLN3-259ENST00000637551 WRNQ14191 1432 aaPredicted RBP eCLIP31.92■■■□□ 2.7
CLN3-259ENST00000637551 RIMBP3CA6NJZ7 1639 aa31.88■■■□□ 2.69
CLN3-259ENST00000637551 RIMBP3BA6NNM3 1639 aa31.88■■■□□ 2.69
CLN3-259ENST00000637551 RIMBP3Q9UFD9 1639 aa31.88■■■□□ 2.69
CLN3-259ENST00000637551 SOGA1O94964 1423 aa31.86■■■□□ 2.69
CLN3-259ENST00000637551 EIF4G3O43432 1585 aaKnown RBP31.83■■■□□ 2.69
CLN3-259ENST00000637551 ZNF608Q9ULD9 1512 aaPredicted RBP31.81■■■□□ 2.68
CLN3-259ENST00000637551 SYNJ1O43426 1573 aa31.78■■■□□ 2.68
CLN3-259ENST00000637551 RAD54L2Q9Y4B4 1467 aa31.76■■■□□ 2.67
CLN3-259ENST00000637551 ABCA10Q8WWZ4 1543 aa31.75■■■□□ 2.67
CLN3-259ENST00000637551 ARHGEF11O15085 1522 aa31.7■■■□□ 2.67
CLN3-259ENST00000637551 AQRO60306 1485 aaKnown RBP eCLIP31.64■■■□□ 2.666e-6■■■■□ 25.1
CLN3-259ENST00000637551 ABCA5Q8WWZ7 1642 aa31.61■■■□□ 2.65
CLN3-259ENST00000637551 GRIN2BQ13224 1484 aa31.57■■■□□ 2.64
CLN3-259ENST00000637551 TDRD9Q8NDG6 1382 aaKnown RBP31.56■■■□□ 2.64
CLN3-259ENST00000637551 MAGI1Q96QZ7 1491 aaPredicted RBP31.55■■■□□ 2.64
CLN3-259ENST00000637551 GAPVD1Q14C86 1478 aa31.54■■■□□ 2.64
CLN3-259ENST00000637551 CYB5RLQ6IPT4 315 aa31.53■■■□□ 2.64
CLN3-259ENST00000637551 PBRM1Q86U86 1689 aa31.51■■■□□ 2.64
CLN3-259ENST00000637551 SNAPC4Q5SXM2 1469 aa31.42■■■□□ 2.62
CLN3-259ENST00000637551 TRHP20396 242 aaPredicted RBP31.42■■■□□ 2.62
CLN3-259ENST00000637551 ERICH3Q5RHP9 1530 aa31.41■■■□□ 2.62
CLN3-259ENST00000637551 CHD1O14646 1710 aa31.38■■■□□ 2.61
CLN3-259ENST00000637551 SYNJ2O15056 1496 aa31.37■■■□□ 2.61
CLN3-259ENST00000637551 ARAP1Q96P48 1450 aa31.34■■■□□ 2.61
CLN3-259ENST00000637551 ADAMTS12P58397 1594 aa31.28■■■□□ 2.6
CLN3-259ENST00000637551 KIF27Q86VH2 1401 aa31.28■■■□□ 2.6
CLN3-259ENST00000637551 FHAD1B1AJZ9 1412 aa31.23■■■□□ 2.59
CLN3-259ENST00000637551 CHMP7Q8WUX9 453 aaPredicted RBP31.19■■■□□ 2.58
CLN3-259ENST00000637551 CUL7Q14999 1698 aa31.16■■■□□ 2.58
CLN3-259ENST00000637551 GRIN2AQ12879 1464 aa31.15■■■□□ 2.58
CLN3-259ENST00000637551 CLASP1Q7Z460 1538 aa31.13■■■□□ 2.57
CLN3-259ENST00000637551 FBLN2P98095 1184 aa31.12■■■□□ 2.57
CLN3-259ENST00000637551 AEBP2Q6ZN18 517 aaPredicted RBP31.12■■■□□ 2.57
CLN3-259ENST00000637551 IGF1RP08069 1367 aa31.06■■■□□ 2.56
CLN3-259ENST00000637551 NUP160Q12769 1436 aa31.06■■■□□ 2.56
CLN3-259ENST00000637551 CEP170Q5SW79 1584 aa30.94■■■□□ 2.54
CLN3-259ENST00000637551 CARMIL1Q5VZK9 1371 aa30.89■■■□□ 2.54
CLN3-259ENST00000637551 EEA1Q15075 1411 aa30.86■■■□□ 2.53
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms