RNA–Protein interactions for RNA: ENST00000469858.5

SMC4-211, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 1,971 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-211ENST00000469858 NISCHQ9Y2I1 1504 aa40.98■■■■■ 4.15
SMC4-211ENST00000469858 CCDC180Q9P1Z9 1646 aa35.72■■■■□ 3.31
SMC4-211ENST00000469858 ZCCHC6Q5VYS8 1495 aaKnown RBP34.44■■■■□ 3.1
SMC4-211ENST00000469858 DCAF8L2P0C7V8 631 aa33.91■■■■□ 3.02
SMC4-211ENST00000469858 DCAF1Q9Y4B6 1507 aa33.83■■■■□ 3.01
SMC4-211ENST00000469858 ABCC9O60706 1549 aa33.78■■■■□ 3
SMC4-211ENST00000469858 SHROOM4Q9ULL8 1493 aa33.57■■■□□ 2.96
SMC4-211ENST00000469858 MYO15BQ96JP2 1530 aa33.39■■■□□ 2.94
SMC4-211ENST00000469858 NACADO15069 1562 aa33.22■■■□□ 2.91
SMC4-211ENST00000469858 RB1CC1Q8TDY2 1594 aa32.96■■■□□ 2.87
SMC4-211ENST00000469858 SCRIBQ14160 1630 aa32.93■■■□□ 2.86
SMC4-211ENST00000469858 UNC13AQ9UPW8 1703 aa32.38■■■□□ 2.77
SMC4-211ENST00000469858 SUPT5HO00267 1087 aaKnown RBP32.3■■■□□ 2.76
SMC4-211ENST00000469858 BICRAQ9NZM4 1560 aa31.97■■■□□ 2.71
SMC4-211ENST00000469858 CECR2Q9BXF3 1484 aa31.87■■■□□ 2.69
SMC4-211ENST00000469858 PABPN1Q86U42 306 aaKnown RBP eCLIP31.87■■■□□ 2.69
SMC4-211ENST00000469858 RSF1Q96T23 1441 aaPredicted RBP31.81■■■□□ 2.68
SMC4-211ENST00000469858 MROH2BQ7Z745 1585 aa31.69■■■□□ 2.66
SMC4-211ENST00000469858 BAZ1AQ9NRL2 1556 aaPredicted RBP31.64■■■□□ 2.66
SMC4-211ENST00000469858 SMARCA4P51532 1647 aa31.52■■■□□ 2.64
SMC4-211ENST00000469858 WIZO95785 1651 aa31.47■■■□□ 2.63
SMC4-211ENST00000469858 TOP2AP11388 1531 aaKnown RBP31.09■■■□□ 2.57
SMC4-211ENST00000469858 PEG3Q9GZU2 1588 aa31.08■■■□□ 2.57
SMC4-211ENST00000469858 EIF4G1Q04637 1599 aaKnown RBP31.01■■■□□ 2.55
SMC4-211ENST00000469858 ATAD2BQ9ULI0 1458 aa30.95■■■□□ 2.55
SMC4-211ENST00000469858 SMARCA2P51531 1590 aa30.94■■■□□ 2.54
SMC4-211ENST00000469858 CHIC1Q5VXU3 224 aa30.89■■■□□ 2.54
SMC4-211ENST00000469858 BAZ1BQ9UIG0 1483 aaKnown RBP30.81■■■□□ 2.52
SMC4-211ENST00000469858 CCDC88BA6NC98 1476 aa30.78■■■□□ 2.52
SMC4-211ENST00000469858 NCAPD3P42695 1498 aa30.65■■■□□ 2.5
SMC4-211ENST00000469858 HMGXB3Q12766 1538 aa30.64■■■□□ 2.49
SMC4-211ENST00000469858 CC2D2AQ9P2K1 1620 aa30.56■■■□□ 2.48
SMC4-211ENST00000469858 TRIM41Q8WV44 630 aa30.32■■■□□ 2.44
SMC4-211ENST00000469858 ABCC8Q09428 1581 aa30.22■■■□□ 2.43
SMC4-211ENST00000469858 CFTRP13569 1480 aa30.01■■■□□ 2.39
SMC4-211ENST00000469858 WRNQ14191 1432 aaPredicted RBP eCLIP29.96■■■□□ 2.39
SMC4-211ENST00000469858 PRDM2Q13029 1718 aa29.93■■■□□ 2.38
SMC4-211ENST00000469858 CADPSQ9ULU8 1353 aa29.88■■■□□ 2.37
SMC4-211ENST00000469858 SYNJ1O43426 1573 aa29.87■■■□□ 2.37
SMC4-211ENST00000469858 FAM9AQ8IZU1 332 aaPredicted RBP29.84■■■□□ 2.37
SMC4-211ENST00000469858 DNAJC5BQ9UF47 199 aa29.77■■■□□ 2.36
SMC4-211ENST00000469858 LOC105371045A0A1W2PR82 267 aa29.76■■■□□ 2.35
SMC4-211ENST00000469858 TOP2BQ02880 1626 aa29.71■■■□□ 2.35
SMC4-211ENST00000469858 BIVM-ERCC5R4GMW8 1640 aa29.69■■■□□ 2.34
SMC4-211ENST00000469858 NESP48681 1621 aa29.68■■■□□ 2.34
SMC4-211ENST00000469858 LAMC3Q9Y6N6 1575 aa29.64■■■□□ 2.33
SMC4-211ENST00000469858 CUX1P39880 1505 aa29.63■■■□□ 2.33
SMC4-211ENST00000469858 SOGA1O94964 1423 aa29.62■■■□□ 2.33
SMC4-211ENST00000469858 FANCD2Q9BXW9 1451 aa29.59■■■□□ 2.33
SMC4-211ENST00000469858 RUSC2Q8N2Y8 1516 aa29.52■■■□□ 2.32
SMC4-211ENST00000469858 EEA1Q15075 1411 aa29.51■■■□□ 2.31
SMC4-211ENST00000469858 EHMT2Q96KQ7 1210 aa29.48■■■□□ 2.31
SMC4-211ENST00000469858 CEP164Q9UPV0 1460 aa29.4■■■□□ 2.3
SMC4-211ENST00000469858 PDS5BQ9NTI5 1447 aa29.39■■■□□ 2.3
SMC4-211ENST00000469858 CSRNP3Q8WYN3 585 aa29.37■■■□□ 2.29
SMC4-211ENST00000469858 KIF21AQ7Z4S6 1674 aa29.35■■■□□ 2.29
SMC4-211ENST00000469858 DNMBPQ6XZF7 1577 aa29.33■■■□□ 2.29
SMC4-211ENST00000469858 FGD5Q6ZNL6 1462 aa29.3■■■□□ 2.28
SMC4-211ENST00000469858 TOPBP1Q92547 1522 aa29.28■■■□□ 2.28
SMC4-211ENST00000469858 URB2Q14146 1524 aaKnown RBP29.23■■■□□ 2.27
SMC4-211ENST00000469858 KIF27Q86VH2 1401 aa29.18■■■□□ 2.26
SMC4-211ENST00000469858 KIF21BO75037 1637 aa29.18■■■□□ 2.26
SMC4-211ENST00000469858 GOLGA3Q08378 1498 aa29.15■■■□□ 2.26
SMC4-211ENST00000469858 POLA1P09884 1462 aaPredicted RBP29.15■■■□□ 2.26
SMC4-211ENST00000469858 CUX2O14529 1486 aa29.12■■■□□ 2.25
SMC4-211ENST00000469858 RAD54L2Q9Y4B4 1467 aa29.07■■■□□ 2.24
SMC4-211ENST00000469858 UBTFP17480 764 aaKnown RBP29.05■■■□□ 2.24
SMC4-211ENST00000469858 TNIKQ9UKE5 1360 aa29.04■■■□□ 2.24
SMC4-211ENST00000469858 MRC2Q9UBG0 1479 aa29.03■■■□□ 2.24
SMC4-211ENST00000469858 RAPGEF2Q9Y4G8 1499 aa29.02■■■□□ 2.24
SMC4-211ENST00000469858 ABCA10Q8WWZ4 1543 aa29.01■■■□□ 2.23
SMC4-211ENST00000469858 PRXQ9BXM0 1461 aa28.98■■■□□ 2.23
SMC4-211ENST00000469858 WDR97A6NE52 1622 aa28.96■■■□□ 2.23
SMC4-211ENST00000469858 ERICH3Q5RHP9 1530 aa28.95■■■□□ 2.23
SMC4-211ENST00000469858 ERCC6Q03468 1493 aa28.95■■■□□ 2.23
SMC4-211ENST00000469858 CEP162Q5TB80 1403 aa28.94■■■□□ 2.22
SMC4-211ENST00000469858 IGF1RP08069 1367 aa28.9■■■□□ 2.22
SMC4-211ENST00000469858 WDR62O43379 1518 aa28.88■■■□□ 2.21
SMC4-211ENST00000469858 TARBP1Q13395 1621 aaKnown RBP28.84■■■□□ 2.21
SMC4-211ENST00000469858 ABCA5Q8WWZ7 1642 aa28.8■■■□□ 2.2
SMC4-211ENST00000469858 THOC2Q8NI27 1593 aaKnown RBP28.8■■■□□ 2.2
SMC4-211ENST00000469858 CARMIL1Q5VZK9 1371 aa28.78■■■□□ 2.2
SMC4-211ENST00000469858 TDRD9Q8NDG6 1382 aaKnown RBP28.77■■■□□ 2.2
SMC4-211ENST00000469858 GAPVD1Q14C86 1478 aa28.73■■■□□ 2.19
SMC4-211ENST00000469858 CUL7Q14999 1698 aa28.72■■■□□ 2.19
SMC4-211ENST00000469858 CLIP1P30622 1438 aa28.7■■■□□ 2.18
SMC4-211ENST00000469858 IFT140Q96RY7 1462 aa28.67■■■□□ 2.18
SMC4-211ENST00000469858 RANGAP1P46060 587 aaPredicted RBP28.64■■■□□ 2.17
SMC4-211ENST00000469858 PBRM1Q86U86 1689 aa28.62■■■□□ 2.17
SMC4-211ENST00000469858 AQRO60306 1485 aaKnown RBP eCLIP28.58■■■□□ 2.172e-8■■■■■ 71.8
SMC4-211ENST00000469858 ZNF608Q9ULD9 1512 aaPredicted RBP28.56■■■□□ 2.16
SMC4-211ENST00000469858 GRIN2BQ13224 1484 aa28.48■■■□□ 2.15
SMC4-211ENST00000469858 EIF4G3O43432 1585 aaKnown RBP28.48■■■□□ 2.15
SMC4-211ENST00000469858 PCGF6Q9BYE7 350 aa28.46■■■□□ 2.15
SMC4-211ENST00000469858 CTTNBP2Q8WZ74 1663 aa28.45■■■□□ 2.15
SMC4-211ENST00000469858 VPS8Q8N3P4 1428 aa28.44■■■□□ 2.14
SMC4-211ENST00000469858 ADAMTS12P58397 1594 aa28.43■■■□□ 2.14
SMC4-211ENST00000469858 PPARGC1BQ86YN6 1023 aaKnown RBP28.42■■■□□ 2.14
SMC4-211ENST00000469858 ARAP1Q96P48 1450 aa28.42■■■□□ 2.14
SMC4-211ENST00000469858 FHAD1B1AJZ9 1412 aa28.4■■■□□ 2.14
Retrieved 100 of 20,778 RNA–protein pairs in 8.3 ms