Protein–RNA interactions for Protein: O75533

SF3B1, Splicing factor 3B subunit 1, humanhuman

Known RBP eCLIP

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1O75533 USP3-213ENST00000559711 1693 ntTSL 5 BASIC13.21□□□□□ -0.297e-8■■■■■ 30.2
SF3B1O75533 USP3-203ENST00000538686 2077 ntTSL 1 (best)12.97□□□□□ -0.337e-8■■■■■ 30.2
SF3B1O75533 ARHGAP35-202ENST00000595822 2977 ntTSL 212.82□□□□□ -0.367e-8■■■■■ 30.2
SF3B1O75533 FAM222B-210ENST00000582059 561 ntTSL 4 BASIC11.97□□□□□ -0.497e-8■■■■■ 30.2
SF3B1O75533 PRCC-207ENST00000526188 634 ntTSL 211.94□□□□□ -0.57e-8■■■■■ 30.2
SF3B1O75533 KLF6-207ENST00000542957 4537 ntTSL 5 BASIC11.8□□□□□ -0.527e-8■■■■■ 30.2
SF3B1O75533 COPS6-208ENST00000474823 752 ntTSL 211.4□□□□□ -0.587e-8■■■■■ 30.2
SF3B1O75533 DDX39B-217ENST00000474961 974 ntTSL 210.14□□□□□ -0.797e-8■■■■■ 30.2
SF3B1O75533 DDX39B-216ENST00000462421 618 ntTSL 39.82□□□□□ -0.847e-8■■■■■ 30.2
SF3B1O75533 COPS6-204ENST00000426712 716 ntTSL 39.81□□□□□ -0.847e-8■■■■■ 30.2
SF3B1O75533 DDX39B-221ENST00000484566 857 ntTSL 59.49□□□□□ -0.897e-8■■■■■ 30.2
SF3B1O75533 USP3-208ENST00000558285 1742 ntTSL 1 (best) BASIC9.48□□□□□ -0.897e-8■■■■■ 30.2
SF3B1O75533 USP3-211ENST00000559257 2217 ntTSL 58.63□□□□□ -1.037e-8■■■■■ 30.2
SF3B1O75533 GPR89A-208ENST00000493684 2699 ntTSL 28.35□□□□□ -1.077e-8■■■■■ 30.2
SF3B1O75533 GPR89A-204ENST00000465185 1906 ntTSL 27.67□□□□□ -1.187e-8■■■■■ 30.2
SF3B1O75533 COPS6-209ENST00000483891 734 ntTSL 36.47□□□□□ -1.377e-8■■■■■ 30.2
SF3B1O75533 NUP205-203ENST00000462316 571 ntTSL 46.11□□□□□ -1.437e-8■■■■■ 30.2
SF3B1O75533 AL355488.2-201ENST00000609909 2850 ntBASIC6.08□□□□□ -1.447e-8■■■■■ 30.2
SF3B1O75533 CRY1-202ENST00000546722 471 ntTSL 34.97□□□□□ -1.617e-8■■■■■ 30.2
SF3B1O75533 RANBP1-212ENST00000467920 529 ntTSL 24.82□□□□□ -1.645e-6■■■■■ 30.2
SF3B1O75533 GPCPD1-202ENST00000418646 4015 ntTSL 54.75□□□□□ -1.657e-8■■■■■ 30.2
SF3B1O75533 GPR89A-206ENST00000478703 662 ntTSL 54.33□□□□□ -1.727e-8■■■■■ 30.2
SF3B1O75533 GPCPD1-207ENST00000633552 571 ntTSL 53.23□□□□□ -1.897e-8■■■■■ 30.2
SF3B1O75533 NUP214-217ENST00000526412 551 ntTSL 52.3□□□□□ -2.047e-8■■■■■ 30.2
SF3B1O75533 PHIP-202ENST00000479165 5694 ntTSL 1 (best)1.23□□□□□ -2.215e-6■■■■■ 30.2
SF3B1O75533 AC132938.6-201ENST00000623828 1655 ntBASIC19.17■□□□□ 0.662e-9■■■■■ 30.1
SF3B1O75533 XPO6-223ENST00000574435 765 ntTSL 517.34■□□□□ 0.374e-6■■■■■ 30.1
SF3B1O75533 CBX4-204ENST00000495122 490 ntTSL 316.87■□□□□ 0.292e-9■■■■■ 30.1
SF3B1O75533 XPO6-222ENST00000573645 509 ntTSL 313.43□□□□□ -0.264e-6■■■■■ 30.1
SF3B1O75533 MARS-220ENST00000549827 465 ntTSL 213.38□□□□□ -0.272e-9■■■■■ 30.1
SF3B1O75533 GGA2-209ENST00000567201 576 ntTSL 46.75□□□□□ -1.332e-9■■■■■ 30.1
SF3B1O75533 SNHG1-216ENST00000541416 996 ntTSL 213.64□□□□□ -0.238e-10■■■■■ 30
SF3B1O75533 SNHG1-207ENST00000537965 578 ntTSL 55.89□□□□□ -1.478e-10■■■■■ 30
SF3B1O75533 SNHG1-222ENST00000545308 646 ntTSL 23.44□□□□□ -1.868e-10■■■■■ 30
SF3B1O75533 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC25.38■■□□□ 1.652e-6■■■■■ 30
SF3B1O75533 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC24.09■■□□□ 1.452e-6■■■■■ 30
SF3B1O75533 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC23.37■■□□□ 1.332e-6■■■■■ 30
SF3B1O75533 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC22.25■■□□□ 1.152e-6■■■■■ 30
SF3B1O75533 SRRM2-221ENST00000574866 638 ntTSL 319.47■□□□□ 0.718e-9■■■■■ 30
SF3B1O75533 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC19.14■□□□□ 0.665e-6■■■■■ 30
SF3B1O75533 WAC-202ENST00000347934 2839 ntTSL 5 BASIC18.79■□□□□ 0.65e-6■■■■■ 30
SF3B1O75533 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.275e-6■■■■■ 30
SF3B1O75533 MSH5-209ENST00000450148 1000 ntTSL 513.57□□□□□ -0.245e-9■■■■■ 30
SF3B1O75533 MSH5-219ENST00000497269 764 ntTSL 26.44□□□□□ -1.385e-9■■■■■ 30
SF3B1O75533 SAFB2-210ENST00000591310 722 ntTSL 315.62■□□□□ 0.093e-6■■■■■ 30
SF3B1O75533 SAFB2-207ENST00000591101 551 ntTSL 29.58□□□□□ -0.883e-6■■■■■ 30
SF3B1O75533 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC31.21■■■□□ 2.591e-6■■■■■ 30
SF3B1O75533 CBX4-201ENST00000269397 2664 ntAPPRIS P2 TSL 1 (best) BASIC28.28■■■□□ 2.121e-6■■■■■ 30
SF3B1O75533 CBX4-203ENST00000494546 432 ntTSL 336.38■■■■□ 3.412e-6■■■■■ 30
SF3B1O75533 ARFGAP1-211ENST00000519531 1490 ntTSL 319.47■□□□□ 0.716e-7■■■■■ 29.9
SF3B1O75533 TRIM28-206ENST00000595974 665 ntTSL 317.72■□□□□ 0.432e-6■■■■■ 29.9
SF3B1O75533 TMBIM6-224ENST00000551154 423 ntTSL 216.22■□□□□ 0.192e-13■■■■■ 29.9
SF3B1O75533 TMBIM6-223ENST00000550951 533 ntTSL 315.28■□□□□ 0.042e-13■■■■■ 29.9
SF3B1O75533 STAG3L5P-205ENST00000473757 1255 ntTSL 1 (best) BASIC16.59■□□□□ 0.251e-8■■■■■ 29.9
SF3B1O75533 MKNK2-210ENST00000589534 454 ntTSL 229.35■■■□□ 2.295e-6■■■■■ 29.8
SF3B1O75533 MKNK2-209ENST00000589509 352 ntTSL 513□□□□□ -0.335e-6■■■■■ 29.8
SF3B1O75533 MEIOB-207ENST00000496541 807 ntTSL 527.17■■□□□ 1.943e-6■■■■■ 29.8
SF3B1O75533 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC24.59■■□□□ 1.533e-6■■■■■ 29.8
SF3B1O75533 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC23.33■■□□□ 1.323e-6■■■■■ 29.8
SF3B1O75533 MEIOB-205ENST00000470044 1857 ntTSL 2 BASIC6.01□□□□□ -1.453e-6■■■■■ 29.8
SF3B1O75533 MEIOB-201ENST00000325962 1694 ntAPPRIS P1 TSL 5 BASIC5.94□□□□□ -1.463e-6■■■■■ 29.8
SF3B1O75533 FXR1-209ENST00000472339 2130 ntTSL 515.36■□□□□ 0.057e-6■■■■■ 29.8
SF3B1O75533 FXR1-214ENST00000480918 1996 ntTSL 2 BASIC14.69□□□□□ -0.067e-6■■■■■ 29.8
SF3B1O75533 FXR1-220ENST00000491062 1768 ntTSL 2 BASIC12.6□□□□□ -0.397e-6■■■■■ 29.8
SF3B1O75533 FXR1-211ENST00000475315 2341 ntTSL 212.31□□□□□ -0.447e-6■■■■■ 29.8
SF3B1O75533 FXR1-201ENST00000305586 3277 ntTSL 5 BASIC11.62□□□□□ -0.557e-6■■■■■ 29.8
SF3B1O75533 FXR1-207ENST00000468861 1989 ntTSL 2 BASIC11.57□□□□□ -0.567e-6■■■■■ 29.8
SF3B1O75533 FXR1-202ENST00000357559 8711 ntAPPRIS P3 TSL 1 (best) BASIC10.75□□□□□ -0.697e-6■■■■■ 29.8
SF3B1O75533 FXR1-203ENST00000445140 2651 ntAPPRIS ALT2 TSL 1 (best) BASIC9.4□□□□□ -0.97e-6■■■■■ 29.8
SF3B1O75533 PICALM-215ENST00000531558 565 ntTSL 528.09■■■□□ 2.092e-6■■■■■ 29.8
SF3B1O75533 PICALM-218ENST00000532041 699 ntTSL 325.52■■□□□ 1.682e-6■■■■■ 29.8
SF3B1O75533 PICALM-203ENST00000525162 548 ntTSL 48.38□□□□□ -1.072e-6■■■■■ 29.8
SF3B1O75533 PICALM-208ENST00000528256 563 ntTSL 45.92□□□□□ -1.462e-6■■■■■ 29.8
SF3B1O75533 PICALM-217ENST00000531930 703 ntTSL 53.96□□□□□ -1.772e-6■■■■■ 29.8
SF3B1O75533 DAZAP1-204ENST00000586579 619 ntTSL 324.75■■□□□ 1.552e-6■■■■■ 29.8
SF3B1O75533 FAR2P4-202ENST00000425399 584 ntBASIC5.31□□□□□ -1.561e-6■■■■■ 29.8
SF3B1O75533 FDFT1-203ENST00000446331 1558 ntTSL 224.76■■□□□ 1.553e-6■■■■■ 29.8
SF3B1O75533 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.173e-6■■■■■ 29.8
SF3B1O75533 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC21.63■■□□□ 1.053e-6■■■■■ 29.8
SF3B1O75533 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC19.91■□□□□ 0.783e-6■■■■■ 29.8
SF3B1O75533 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.183e-6■■■■■ 29.8
SF3B1O75533 FDFT1-223ENST00000615631 2462 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.053e-6■■■■■ 29.8
SF3B1O75533 FDFT1-214ENST00000528812 2013 ntTSL 2 BASIC14.93□□□□□ -0.023e-6■■■■■ 29.8
SF3B1O75533 FDFT1-225ENST00000622850 1987 ntTSL 2 BASIC11.73□□□□□ -0.533e-6■■■■■ 29.8
SF3B1O75533 FDFT1-222ENST00000538689 2289 ntTSL 2 BASIC7.27□□□□□ -1.253e-6■■■■■ 29.8
SF3B1O75533 SETD2-202ENST00000409792 8142 ntAPPRIS P1 TSL 5 BASIC6.44□□□□□ -1.382e-6■■■■■ 29.7
SF3B1O75533 CCDC18-AS1-222ENST00000457025 413 ntTSL 510.72□□□□□ -0.699e-8■■■■■ 29.7
SF3B1O75533 CCDC18-AS1-216ENST00000447577 431 ntTSL 57.13□□□□□ -1.279e-8■■■■■ 29.7
SF3B1O75533 CCDC18-AS1-218ENST00000450843 600 ntTSL 56.84□□□□□ -1.319e-8■■■■■ 29.7
SF3B1O75533 CCDC18-AS1-212ENST00000440778 596 ntTSL 56.66□□□□□ -1.349e-8■■■■■ 29.7
SF3B1O75533 MAN2A2-205ENST00000558171 790 ntTSL 516.4■□□□□ 0.223e-11■■■■■ 29.7
SF3B1O75533 XPO1-212ENST00000457483 488 ntTSL 47.21□□□□□ -1.268e-7■■■■■ 29.7
SF3B1O75533 ATF6B-216ENST00000494022 320 ntTSL 213.75□□□□□ -0.213e-10■■■■■ 29.7
SF3B1O75533 RPL9-207ENST00000506581 371 ntTSL 52.59□□□□□ -24e-6■■■■■ 29.7
SF3B1O75533 RLF-201ENST00000372771 6246 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.019e-7■■■■■ 29.6
SF3B1O75533 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC15.7■□□□□ 0.15e-7■■■■■ 29.6
SF3B1O75533 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.361e-6■■■■■ 29.6
SF3B1O75533 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC16.77■□□□□ 0.281e-6■■■■■ 29.6
SF3B1O75533 FDPS-203ENST00000447866 1256 ntAPPRIS ALT1 TSL 5 BASIC16.39■□□□□ 0.211e-6■■■■■ 29.6
SF3B1O75533 FDPS-221ENST00000612683 1198 ntAPPRIS ALT1 TSL 5 BASIC16.27■□□□□ 0.21e-6■■■■■ 29.6
Retrieved 100 of 46,956 protein–RNA pairs in 3337.3 ms