RNA–Protein interactions for RNA: ENST00000426712.1

COPS6-204, Transcript of COP9 signalosome subunit 6, humanhuman

TSL 3

Gene COPS6, Length 716 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPS6-204ENST00000426712 NISCHQ9Y2I1 1504 aa22.46■■□□□ 1.19
COPS6-204ENST00000426712 CCDC180Q9P1Z9 1646 aa20.21■□□□□ 0.83
COPS6-204ENST00000426712 ABCC9O60706 1549 aa20.19■□□□□ 0.82
COPS6-204ENST00000426712 RB1CC1Q8TDY2 1594 aa19.24■□□□□ 0.67
COPS6-204ENST00000426712 NACADO15069 1562 aa19.12■□□□□ 0.65
COPS6-204ENST00000426712 DNAJC5BQ9UF47 199 aa19.11■□□□□ 0.65
COPS6-204ENST00000426712 UNC13AQ9UPW8 1703 aa18.91■□□□□ 0.62
COPS6-204ENST00000426712 DCAF8L2P0C7V8 631 aa18.9■□□□□ 0.62
COPS6-204ENST00000426712 MYO15BQ96JP2 1530 aa18.86■□□□□ 0.61
COPS6-204ENST00000426712 PABPN1Q86U42 306 aaKnown RBP eCLIP18.8■□□□□ 0.6
COPS6-204ENST00000426712 BICRAQ9NZM4 1560 aa18.72■□□□□ 0.59
COPS6-204ENST00000426712 DCAF1Q9Y4B6 1507 aa18.59■□□□□ 0.57
COPS6-204ENST00000426712 ZCCHC6Q5VYS8 1495 aaKnown RBP18.57■□□□□ 0.56
COPS6-204ENST00000426712 SHROOM4Q9ULL8 1493 aa18.44■□□□□ 0.54
COPS6-204ENST00000426712 SCRIBQ14160 1630 aa18.32■□□□□ 0.52
COPS6-204ENST00000426712 CC2D2AQ9P2K1 1620 aa18.3■□□□□ 0.52
COPS6-204ENST00000426712 EIF4G1Q04637 1599 aaKnown RBP18.22■□□□□ 0.51
COPS6-204ENST00000426712 CECR2Q9BXF3 1484 aa18.22■□□□□ 0.51
COPS6-204ENST00000426712 NCAPD3P42695 1498 aa17.65■□□□□ 0.42
COPS6-204ENST00000426712 DNAJC5Q9H3Z4 198 aa17.62■□□□□ 0.41
COPS6-204ENST00000426712 ATAD2BQ9ULI0 1458 aa17.56■□□□□ 0.4
COPS6-204ENST00000426712 SMARCA4P51532 1647 aa17.52■□□□□ 0.4
COPS6-204ENST00000426712 SMARCA2P51531 1590 aa17.51■□□□□ 0.39
COPS6-204ENST00000426712 HMGXB3Q12766 1538 aa17.49■□□□□ 0.39
COPS6-204ENST00000426712 CUX2O14529 1486 aa17.49■□□□□ 0.39
COPS6-204ENST00000426712 ERCC6Q03468 1493 aa17.42■□□□□ 0.38
COPS6-204ENST00000426712 BAZ1AQ9NRL2 1556 aaPredicted RBP17.41■□□□□ 0.38
COPS6-204ENST00000426712 PEG3Q9GZU2 1588 aa17.4■□□□□ 0.38
COPS6-204ENST00000426712 NESP48681 1621 aa17.35■□□□□ 0.37
COPS6-204ENST00000426712 BAZ1BQ9UIG0 1483 aaKnown RBP17.34■□□□□ 0.37
COPS6-204ENST00000426712 MROH2BQ7Z745 1585 aa17.28■□□□□ 0.36
COPS6-204ENST00000426712 LAMC3Q9Y6N6 1575 aa17.26■□□□□ 0.35
COPS6-204ENST00000426712 THOC2Q8NI27 1593 aaKnown RBP17.21■□□□□ 0.35
COPS6-204ENST00000426712 KIF21AQ7Z4S6 1674 aa17.17■□□□□ 0.34
COPS6-204ENST00000426712 PDS5BQ9NTI5 1447 aa17.13■□□□□ 0.33
COPS6-204ENST00000426712 CADPSQ9ULU8 1353 aa17.09■□□□□ 0.33
COPS6-204ENST00000426712 WIZO95785 1651 aa17.09■□□□□ 0.33
COPS6-204ENST00000426712 MRC2Q9UBG0 1479 aa16.97■□□□□ 0.31
COPS6-204ENST00000426712 WDR62O43379 1518 aa16.96■□□□□ 0.3
COPS6-204ENST00000426712 RSF1Q96T23 1441 aaPredicted RBP16.9■□□□□ 0.3
COPS6-204ENST00000426712 CFTRP13569 1480 aa16.88■□□□□ 0.29
COPS6-204ENST00000426712 CEP164Q9UPV0 1460 aa16.87■□□□□ 0.29
COPS6-204ENST00000426712 FANCD2Q9BXW9 1451 aa16.86■□□□□ 0.29
COPS6-204ENST00000426712 TOP2AP11388 1531 aaKnown RBP16.84■□□□□ 0.29
COPS6-204ENST00000426712 PRDM2Q13029 1718 aa16.78■□□□□ 0.28
COPS6-204ENST00000426712 URB2Q14146 1524 aaKnown RBP16.75■□□□□ 0.27
COPS6-204ENST00000426712 OSCARQ8IYS5 282 aa16.69■□□□□ 0.26
COPS6-204ENST00000426712 TRIM41Q8WV44 630 aa16.68■□□□□ 0.26
COPS6-204ENST00000426712 CCDC88BA6NC98 1476 aa16.67■□□□□ 0.26
COPS6-204ENST00000426712 IFT140Q96RY7 1462 aa16.56■□□□□ 0.24
COPS6-204ENST00000426712 TOPBP1Q92547 1522 aa16.55■□□□□ 0.24
COPS6-204ENST00000426712 ABCC8Q09428 1581 aa16.55■□□□□ 0.24
COPS6-204ENST00000426712 ZNF608Q9ULD9 1512 aaPredicted RBP16.55■□□□□ 0.24
COPS6-204ENST00000426712 DNMBPQ6XZF7 1577 aa16.48■□□□□ 0.23
COPS6-204ENST00000426712 RIMBP3CA6NJZ7 1639 aa16.48■□□□□ 0.23
COPS6-204ENST00000426712 RIMBP3BA6NNM3 1639 aa16.48■□□□□ 0.23
COPS6-204ENST00000426712 RIMBP3Q9UFD9 1639 aa16.48■□□□□ 0.23
COPS6-204ENST00000426712 TARBP1Q13395 1621 aaKnown RBP16.45■□□□□ 0.22
COPS6-204ENST00000426712 EIF4G3O43432 1585 aaKnown RBP16.43■□□□□ 0.22
COPS6-204ENST00000426712 ARHGEF11O15085 1522 aa16.39■□□□□ 0.21
COPS6-204ENST00000426712 CHD1O14646 1710 aa16.39■□□□□ 0.21
COPS6-204ENST00000426712 AQRO60306 1485 aaKnown RBP eCLIP16.38■□□□□ 0.213e-14■■■■■ 70.9
COPS6-204ENST00000426712 POLA1P09884 1462 aaPredicted RBP16.36■□□□□ 0.21
COPS6-204ENST00000426712 RAD54L2Q9Y4B4 1467 aa16.3■□□□□ 0.2
COPS6-204ENST00000426712 SOGA1O94964 1423 aa16.3■□□□□ 0.2
COPS6-204ENST00000426712 WDR97A6NE52 1622 aa16.28■□□□□ 0.2
COPS6-204ENST00000426712 CYB5RLQ6IPT4 315 aa16.27■□□□□ 0.2
COPS6-204ENST00000426712 TDRD9Q8NDG6 1382 aaKnown RBP16.26■□□□□ 0.19
COPS6-204ENST00000426712 CUX1P39880 1505 aa16.24■□□□□ 0.19
COPS6-204ENST00000426712 FBLN2P98095 1184 aa16.24■□□□□ 0.19
COPS6-204ENST00000426712 FGD5Q6ZNL6 1462 aa16.23■□□□□ 0.19
COPS6-204ENST00000426712 ARAP1Q96P48 1450 aa16.22■□□□□ 0.19
COPS6-204ENST00000426712 SNAPC4Q5SXM2 1469 aa16.18■□□□□ 0.18
COPS6-204ENST00000426712 MAGI1Q96QZ7 1491 aaPredicted RBP16.18■□□□□ 0.18
COPS6-204ENST00000426712 CLASP1Q7Z460 1538 aa16.18■□□□□ 0.18
COPS6-204ENST00000426712 GRIN2BQ13224 1484 aa16.16■□□□□ 0.18
COPS6-204ENST00000426712 CHMP7Q8WUX9 453 aaPredicted RBP16.15■□□□□ 0.18
COPS6-204ENST00000426712 SYNJ1O43426 1573 aa16.13■□□□□ 0.17
COPS6-204ENST00000426712 PBRM1Q86U86 1689 aa16.13■□□□□ 0.17
COPS6-204ENST00000426712 SYNJ2O15056 1496 aa16.11■□□□□ 0.17
COPS6-204ENST00000426712 GAPVD1Q14C86 1478 aa16.1■□□□□ 0.17
COPS6-204ENST00000426712 ABCA10Q8WWZ4 1543 aa16.09■□□□□ 0.17
COPS6-204ENST00000426712 TRHP20396 242 aaPredicted RBP16.07■□□□□ 0.16
COPS6-204ENST00000426712 ABCA5Q8WWZ7 1642 aa16.07■□□□□ 0.16
COPS6-204ENST00000426712 SUPT5HO00267 1087 aaKnown RBP16.02■□□□□ 0.16
COPS6-204ENST00000426712 BIVM-ERCC5R4GMW8 1640 aa16■□□□□ 0.15
COPS6-204ENST00000426712 WRNQ14191 1432 aaPredicted RBP eCLIP15.98■□□□□ 0.15
COPS6-204ENST00000426712 TOP2BQ02880 1626 aa15.97■□□□□ 0.15
COPS6-204ENST00000426712 GRIN2AQ12879 1464 aa15.95■□□□□ 0.14
COPS6-204ENST00000426712 NUP160Q12769 1436 aa15.93■□□□□ 0.14
COPS6-204ENST00000426712 ADAMTS12P58397 1594 aa15.92■□□□□ 0.14
COPS6-204ENST00000426712 CEP170Q5SW79 1584 aa15.91■□□□□ 0.14
COPS6-204ENST00000426712 ERCC6L2Q5T890 1561 aa15.9■□□□□ 0.14
COPS6-204ENST00000426712 SHROOM2Q13796 1616 aa15.9■□□□□ 0.14
COPS6-204ENST00000426712 ERICH3Q5RHP9 1530 aa15.89■□□□□ 0.13
COPS6-204ENST00000426712 FHAD1B1AJZ9 1412 aa15.89■□□□□ 0.13
COPS6-204ENST00000426712 JPH4Q96JJ6 628 aa15.78■□□□□ 0.12
COPS6-204ENST00000426712 KIF13AQ9H1H9 1805 aa15.76■□□□□ 0.11
COPS6-204ENST00000426712 PRG4Q92954 1404 aaPredicted RBP15.75■□□□□ 0.11
COPS6-204ENST00000426712 RUSC2Q8N2Y8 1516 aa15.69■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms