RNA–Protein interactions for RNA: ENST00000497269.5

MSH5-219, Transcript of mutS homolog 5, humanhuman

TSL 2

Gene MSH5, Length 764 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-219ENST00000497269 AEBP2Q6ZN18 517 aaPredicted RBP26.36■■□□□ 1.81
MSH5-219ENST00000497269 CHIC1Q5VXU3 224 aa25.83■■□□□ 1.73
MSH5-219ENST00000497269 PHF23Q9BUL5 403 aaPredicted RBP22.78■■□□□ 1.24
MSH5-219ENST00000497269 SENP3Q9H4L4 574 aaPredicted RBP22.27■■□□□ 1.16
MSH5-219ENST00000497269 PLPPR3Q6T4P5 718 aa21.04■□□□□ 0.96
MSH5-219ENST00000497269 FOXD1Q16676 465 aa20.71■□□□□ 0.91
MSH5-219ENST00000497269 ADRA2BP18089 450 aa20.12■□□□□ 0.81
MSH5-219ENST00000497269 PPP6R1Q9UPN7 881 aa20.08■□□□□ 0.81
MSH5-219ENST00000497269 PIAS4Q8N2W9 510 aaPredicted RBP19.62■□□□□ 0.73
MSH5-219ENST00000497269 MSH5O43196 834 aa18.96■□□□□ 0.63
MSH5-219ENST00000497269 PPP4R3CPQ6ZMV5 832 aa18.62■□□□□ 0.57
MSH5-219ENST00000497269 KCNA4P22459 653 aa18.41■□□□□ 0.54
MSH5-219ENST00000497269 SCAF1Q9H7N4 1312 aaKnown RBP18.27■□□□□ 0.52
MSH5-219ENST00000497269 MAPK8IP2Q13387 824 aaPredicted RBP18.22■□□□□ 0.51
MSH5-219ENST00000497269 NCBP3Q53F19 620 aaKnown RBP18.12■□□□□ 0.49
MSH5-219ENST00000497269 CNKSR2Q8WXI2 1034 aa18■□□□□ 0.47
MSH5-219ENST00000497269 NPM3O75607 178 aaKnown RBP17.91■□□□□ 0.46
MSH5-219ENST00000497269 DMRT2Q9Y5R5 561 aa17.79■□□□□ 0.44
MSH5-219ENST00000497269 RNF216Q9NWF9 866 aaPredicted RBP17.58■□□□□ 0.4
MSH5-219ENST00000497269 SLC4A1APQ9BWU0 796 aaKnown RBP17.54■□□□□ 0.4
MSH5-219ENST00000497269 HOXD11P31277 338 aaPredicted RBP17.45■□□□□ 0.38
MSH5-219ENST00000497269 EHMT2Q96KQ7 1210 aa17.36■□□□□ 0.37
MSH5-219ENST00000497269 DCAF8L1A6NGE4 600 aa17.24■□□□□ 0.35
MSH5-219ENST00000497269 DNAJC5BQ9UF47 199 aa17.08■□□□□ 0.32
MSH5-219ENST00000497269 POTEDQ86YR6 584 aa17.07■□□□□ 0.32
MSH5-219ENST00000497269 CSRNP3Q8WYN3 585 aa16.94■□□□□ 0.3
MSH5-219ENST00000497269 ZBTB22O15209 634 aa16.93■□□□□ 0.3
MSH5-219ENST00000497269 SLC4A2P04920 1241 aa16.86■□□□□ 0.29
MSH5-219ENST00000497269 FOXD4L1Q9NU39 408 aa16.83■□□□□ 0.28
MSH5-219ENST00000497269 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.77■□□□□ 0.281e-6■■□□□ 13.5
MSH5-219ENST00000497269 MYCNP04198 464 aaPredicted RBP16.51■□□□□ 0.23
MSH5-219ENST00000497269 U3KPZ7 1027 aaPredicted RBP16.48■□□□□ 0.23
MSH5-219ENST00000497269 RNF39Q9H2S5 420 aa16.28■□□□□ 0.2
MSH5-219ENST00000497269 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.23■□□□□ 0.19
MSH5-219ENST00000497269 HNRNPUL2Q1KMD3 747 aaKnown RBP16.23■□□□□ 0.19
MSH5-219ENST00000497269 SAMD1Q6SPF0 538 aaPredicted RBP16.2■□□□□ 0.18
MSH5-219ENST00000497269 ATF5Q9Y2D1 282 aaPredicted RBP16.15■□□□□ 0.18
MSH5-219ENST00000497269 ATXN8OSP0DMR3 200 aa16.12■□□□□ 0.17
MSH5-219ENST00000497269 C1QBPQ07021 282 aaKnown RBP16.05■□□□□ 0.16
MSH5-219ENST00000497269 SPINK5Q9NQ38 1064 aaPredicted RBP16.03■□□□□ 0.16
MSH5-219ENST00000497269 APLP2Q06481 763 aa16.02■□□□□ 0.16
MSH5-219ENST00000497269 CAPN15O75808 1086 aa15.98■□□□□ 0.15
MSH5-219ENST00000497269 TRHP20396 242 aaPredicted RBP15.97■□□□□ 0.15
MSH5-219ENST00000497269 CACNB1Q02641 598 aaPredicted RBP15.85■□□□□ 0.13
MSH5-219ENST00000497269 ZNF219Q9P2Y4 722 aaPredicted RBP15.82■□□□□ 0.12
MSH5-219ENST00000497269 ABCB7O75027 752 aa15.74■□□□□ 0.11
MSH5-219ENST00000497269 POLA2Q14181 598 aa15.68■□□□□ 0.1
MSH5-219ENST00000497269 DSG3P32926 999 aa15.57■□□□□ 0.08
MSH5-219ENST00000497269 MKRN4PQ13434 485 aaPredicted RBP15.41■□□□□ 0.06
MSH5-219ENST00000497269 FBLN2P98095 1184 aa15.4■□□□□ 0.06
MSH5-219ENST00000497269 FKBP8Q14318 412 aa15.38■□□□□ 0.05
MSH5-219ENST00000497269 ZBTB12Q9Y330 459 aaPredicted RBP15.31■□□□□ 0.04
MSH5-219ENST00000497269 OSCARQ8IYS5 282 aa15.17■□□□□ 0.02
MSH5-219ENST00000497269 SPDYE4A6NLX3 237 aa15.15■□□□□ 0.02
MSH5-219ENST00000497269 ZNF692Q9BU19 519 aaPredicted RBP14.99□□□□□ -0.01
MSH5-219ENST00000497269 SPDYE2BA6NHP3 402 aa14.93□□□□□ -0.02
MSH5-219ENST00000497269 SPDYE6P0CI01 402 aa14.93□□□□□ -0.02
MSH5-219ENST00000497269 SPDYE2Q495Y8 402 aa14.93□□□□□ -0.02
MSH5-219ENST00000497269 SSUH2Q9Y2M2 353 aa14.83□□□□□ -0.04
MSH5-219ENST00000497269 PABPN1Q86U42 306 aaKnown RBP eCLIP14.81□□□□□ -0.04
MSH5-219ENST00000497269 RBM42Q9BTD8 480 aaKnown RBP14.79□□□□□ -0.04
MSH5-219ENST00000497269 PROM2Q8N271 834 aa14.77□□□□□ -0.05
MSH5-219ENST00000497269 FBXO3Q9UK99 471 aa14.66□□□□□ -0.06
MSH5-219ENST00000497269 AKT1S1Q96B36 256 aa14.65□□□□□ -0.06
MSH5-219ENST00000497269 REM2Q8IYK8 340 aaPredicted RBP14.56□□□□□ -0.08
MSH5-219ENST00000497269 CLEC11AQ9Y240 323 aa14.56□□□□□ -0.08
MSH5-219ENST00000497269 NISCHQ9Y2I1 1504 aa14.55□□□□□ -0.08
MSH5-219ENST00000497269 VASPP50552 380 aaPredicted RBP14.52□□□□□ -0.09
MSH5-219ENST00000497269 SPDYE1Q8NFV5 336 aaPredicted RBP14.49□□□□□ -0.09
MSH5-219ENST00000497269 STAG3Q9UJ98 1225 aa14.48□□□□□ -0.09
MSH5-219ENST00000497269 PITPNM1O00562 1244 aa14.43□□□□□ -0.1
MSH5-219ENST00000497269 PLCD3Q8N3E9 789 aa14.4□□□□□ -0.1
MSH5-219ENST00000497269 MIER1Q8N108 512 aa14.39□□□□□ -0.11
MSH5-219ENST00000497269 PRR29P0C7W0 189 aa14.36□□□□□ -0.11
MSH5-219ENST00000497269 IFNLR1Q8IU57 520 aaPredicted RBP14.34□□□□□ -0.11
MSH5-219ENST00000497269 KLHL34Q8N239 644 aa14.32□□□□□ -0.12
MSH5-219ENST00000497269 PLEKHG5O94827 1062 aa14.25□□□□□ -0.13
MSH5-219ENST00000497269 RTN4Q9NQC3 1192 aaKnown RBP14.25□□□□□ -0.13
MSH5-219ENST00000497269 AMER1Q5JTC6 1135 aaPredicted RBP14.19□□□□□ -0.14
MSH5-219ENST00000497269 CHADLQ6NUI6 762 aa14.19□□□□□ -0.14
MSH5-219ENST00000497269 CHRDL2Q6WN34 429 aa14.18□□□□□ -0.14
MSH5-219ENST00000497269 CREBZFQ9NS37 354 aa14.18□□□□□ -0.14
MSH5-219ENST00000497269 SPOCK2Q92563 424 aa14.13□□□□□ -0.15
MSH5-219ENST00000497269 PRKAR2AP13861 404 aaKnown RBP14.09□□□□□ -0.15
MSH5-219ENST00000497269 ZBTB47Q9UFB7 747 aaPredicted RBP14.09□□□□□ -0.15
MSH5-219ENST00000497269 PIP4P2Q8N4L2 257 aa14.05□□□□□ -0.16
MSH5-219ENST00000497269 FXR2P51116 673 aaKnown RBP eCLIP14.04□□□□□ -0.16
MSH5-219ENST00000497269 MNX1P50219 401 aaPredicted RBP14.02□□□□□ -0.17
MSH5-219ENST00000497269 CIZ1Q9ULV3 898 aaPredicted RBP13.99□□□□□ -0.17
MSH5-219ENST00000497269 FARP1Q9Y4F1 1045 aaPredicted RBP13.95□□□□□ -0.18
MSH5-219ENST00000497269 NPM1P06748 294 aaKnown RBP eCLIP13.93□□□□□ -0.18
MSH5-219ENST00000497269 NUBP1P53384 320 aa13.93□□□□□ -0.18
MSH5-219ENST00000497269 PKD2Q13563 968 aa13.9□□□□□ -0.18
MSH5-219ENST00000497269 DCAF8Q5TAQ9 597 aa13.9□□□□□ -0.18
MSH5-219ENST00000497269 RASEFQ8IZ41 740 aa13.89□□□□□ -0.19
MSH5-219ENST00000497269 ECM2O94769 699 aaPredicted RBP13.86□□□□□ -0.19
MSH5-219ENST00000497269 FAM212AQ96EL1 285 aa13.84□□□□□ -0.19
MSH5-219ENST00000497269 TSPYL2Q9H2G4 693 aaPredicted RBP13.84□□□□□ -0.19
MSH5-219ENST00000497269 DCAF8L2P0C7V8 631 aa13.83□□□□□ -0.2
MSH5-219ENST00000497269 GSE1Q14687 1217 aa13.81□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 71.4 ms