RNA–Protein interactions for RNA: ENST00000495122.1

CBX4-204, Transcript of chromobox 4, humanhuman

TSL 3

Gene CBX4, Length 490 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4-204ENST00000495122 NISCHQ9Y2I1 1504 aa38.11■■■■□ 3.69
CBX4-204ENST00000495122 CCDC180Q9P1Z9 1646 aa34.32■■■■□ 3.08
CBX4-204ENST00000495122 ABCC9O60706 1549 aa33.82■■■■□ 3
CBX4-204ENST00000495122 RB1CC1Q8TDY2 1594 aa32.41■■■□□ 2.78
CBX4-204ENST00000495122 NACADO15069 1562 aa32.23■■■□□ 2.75
CBX4-204ENST00000495122 UNC13AQ9UPW8 1703 aa31.97■■■□□ 2.71
CBX4-204ENST00000495122 MYO15BQ96JP2 1530 aa31.86■■■□□ 2.69
CBX4-204ENST00000495122 DCAF8L2P0C7V8 631 aa31.75■■■□□ 2.67
CBX4-204ENST00000495122 ZCCHC6Q5VYS8 1495 aaKnown RBP31.66■■■□□ 2.66
CBX4-204ENST00000495122 DCAF1Q9Y4B6 1507 aa31.54■■■□□ 2.64
CBX4-204ENST00000495122 BICRAQ9NZM4 1560 aa31.5■■■□□ 2.63
CBX4-204ENST00000495122 DNAJC5BQ9UF47 199 aa31.45■■■□□ 2.63
CBX4-204ENST00000495122 PABPN1Q86U42 306 aaKnown RBP eCLIP31.37■■■□□ 2.61
CBX4-204ENST00000495122 SCRIBQ14160 1630 aa31.15■■■□□ 2.58
CBX4-204ENST00000495122 SHROOM4Q9ULL8 1493 aa31.07■■■□□ 2.56
CBX4-204ENST00000495122 CC2D2AQ9P2K1 1620 aa30.69■■■□□ 2.5
CBX4-204ENST00000495122 EIF4G1Q04637 1599 aaKnown RBP30.66■■■□□ 2.5
CBX4-204ENST00000495122 CECR2Q9BXF3 1484 aa30.44■■■□□ 2.46
CBX4-204ENST00000495122 SMARCA4P51532 1647 aa29.78■■■□□ 2.36
CBX4-204ENST00000495122 NCAPD3P42695 1498 aa29.65■■■□□ 2.34
CBX4-204ENST00000495122 ATAD2BQ9ULI0 1458 aa29.61■■■□□ 2.33
CBX4-204ENST00000495122 SMARCA2P51531 1590 aa29.61■■■□□ 2.33
CBX4-204ENST00000495122 BAZ1AQ9NRL2 1556 aaPredicted RBP29.6■■■□□ 2.33
CBX4-204ENST00000495122 HMGXB3Q12766 1538 aa29.58■■■□□ 2.33
CBX4-204ENST00000495122 PEG3Q9GZU2 1588 aa29.49■■■□□ 2.31
CBX4-204ENST00000495122 MROH2BQ7Z745 1585 aa29.35■■■□□ 2.29
CBX4-204ENST00000495122 BAZ1BQ9UIG0 1483 aaKnown RBP29.35■■■□□ 2.29
CBX4-204ENST00000495122 ERCC6Q03468 1493 aa29.17■■■□□ 2.26
CBX4-204ENST00000495122 NESP48681 1621 aa29.14■■■□□ 2.26
CBX4-204ENST00000495122 WIZO95785 1651 aa29.12■■■□□ 2.25
CBX4-204ENST00000495122 CUX2O14529 1486 aa29.11■■■□□ 2.25
CBX4-204ENST00000495122 LAMC3Q9Y6N6 1575 aa29.08■■■□□ 2.25
CBX4-204ENST00000495122 KIF21AQ7Z4S6 1674 aa29.01■■■□□ 2.23
CBX4-204ENST00000495122 THOC2Q8NI27 1593 aaKnown RBP28.98■■■□□ 2.23
CBX4-204ENST00000495122 DNAJC5Q9H3Z4 198 aa28.9■■■□□ 2.22
CBX4-204ENST00000495122 RSF1Q96T23 1441 aaPredicted RBP28.75■■■□□ 2.19
CBX4-204ENST00000495122 PDS5BQ9NTI5 1447 aa28.74■■■□□ 2.19
CBX4-204ENST00000495122 TOP2AP11388 1531 aaKnown RBP28.73■■■□□ 2.19
CBX4-204ENST00000495122 CADPSQ9ULU8 1353 aa28.71■■■□□ 2.19
CBX4-204ENST00000495122 PRDM2Q13029 1718 aa28.63■■■□□ 2.17
CBX4-204ENST00000495122 MRC2Q9UBG0 1479 aa28.56■■■□□ 2.16
CBX4-204ENST00000495122 WDR62O43379 1518 aa28.55■■■□□ 2.16
CBX4-204ENST00000495122 CFTRP13569 1480 aa28.5■■■□□ 2.15
CBX4-204ENST00000495122 CEP164Q9UPV0 1460 aa28.49■■■□□ 2.15
CBX4-204ENST00000495122 FANCD2Q9BXW9 1451 aa28.45■■■□□ 2.14
CBX4-204ENST00000495122 SUPT5HO00267 1087 aaKnown RBP28.33■■■□□ 2.13
CBX4-204ENST00000495122 CCDC88BA6NC98 1476 aa28.29■■■□□ 2.12
CBX4-204ENST00000495122 URB2Q14146 1524 aaKnown RBP28.24■■■□□ 2.11
CBX4-204ENST00000495122 TOPBP1Q92547 1522 aa27.97■■■□□ 2.07
CBX4-204ENST00000495122 DNMBPQ6XZF7 1577 aa27.95■■■□□ 2.07
CBX4-204ENST00000495122 ABCC8Q09428 1581 aa27.9■■■□□ 2.06
CBX4-204ENST00000495122 IFT140Q96RY7 1462 aa27.89■■■□□ 2.05
CBX4-204ENST00000495122 EIF4G3O43432 1585 aaKnown RBP27.83■■■□□ 2.05
CBX4-204ENST00000495122 ZNF608Q9ULD9 1512 aaPredicted RBP27.82■■■□□ 2.04
CBX4-204ENST00000495122 TARBP1Q13395 1621 aaKnown RBP27.81■■■□□ 2.04
CBX4-204ENST00000495122 POLA1P09884 1462 aaPredicted RBP27.69■■■□□ 2.02
CBX4-204ENST00000495122 CHD1O14646 1710 aa27.68■■■□□ 2.02
CBX4-204ENST00000495122 OSCARQ8IYS5 282 aa27.62■■■□□ 2.01
CBX4-204ENST00000495122 CUX1P39880 1505 aa27.59■■■□□ 2.01
CBX4-204ENST00000495122 WDR97A6NE52 1622 aa27.59■■■□□ 2.01
CBX4-204ENST00000495122 FGD5Q6ZNL6 1462 aa27.55■■■□□ 2
CBX4-204ENST00000495122 RIMBP3CA6NJZ7 1639 aa27.53■■■□□ 2
CBX4-204ENST00000495122 RIMBP3BA6NNM3 1639 aa27.53■■■□□ 2
CBX4-204ENST00000495122 RIMBP3Q9UFD9 1639 aa27.53■■■□□ 2
CBX4-204ENST00000495122 AQRO60306 1485 aaKnown RBP eCLIP27.53■■■□□ 23e-9■■■■□ 20.1
CBX4-204ENST00000495122 RAD54L2Q9Y4B4 1467 aa27.53■■■□□ 2
CBX4-204ENST00000495122 TRIM41Q8WV44 630 aa27.52■■■□□ 2
CBX4-204ENST00000495122 SOGA1O94964 1423 aa27.47■■□□□ 1.99
CBX4-204ENST00000495122 PBRM1Q86U86 1689 aa27.46■■□□□ 1.99
CBX4-204ENST00000495122 CHIC1Q5VXU3 224 aa27.42■■□□□ 1.98
CBX4-204ENST00000495122 ARHGEF11O15085 1522 aa27.38■■□□□ 1.97
CBX4-204ENST00000495122 TDRD9Q8NDG6 1382 aaKnown RBP27.35■■□□□ 1.97
CBX4-204ENST00000495122 BIVM-ERCC5R4GMW8 1640 aa27.35■■□□□ 1.97
CBX4-204ENST00000495122 SNAPC4Q5SXM2 1469 aa27.34■■□□□ 1.97
CBX4-204ENST00000495122 ABCA5Q8WWZ7 1642 aa27.33■■□□□ 1.97
CBX4-204ENST00000495122 MAGI1Q96QZ7 1491 aaPredicted RBP27.29■■□□□ 1.96
CBX4-204ENST00000495122 GRIN2BQ13224 1484 aa27.27■■□□□ 1.96
CBX4-204ENST00000495122 TOP2BQ02880 1626 aa27.27■■□□□ 1.96
CBX4-204ENST00000495122 ABCA10Q8WWZ4 1543 aa27.26■■□□□ 1.95
CBX4-204ENST00000495122 CLASP1Q7Z460 1538 aa27.24■■□□□ 1.95
CBX4-204ENST00000495122 SYNJ1O43426 1573 aa27.23■■□□□ 1.95
CBX4-204ENST00000495122 GAPVD1Q14C86 1478 aa27.2■■□□□ 1.95
CBX4-204ENST00000495122 FBLN2P98095 1184 aa27.17■■□□□ 1.94
CBX4-204ENST00000495122 SYNJ2O15056 1496 aa27.17■■□□□ 1.94
CBX4-204ENST00000495122 WRNQ14191 1432 aaPredicted RBP eCLIP27.12■■□□□ 1.93
CBX4-204ENST00000495122 ARAP1Q96P48 1450 aa27.12■■□□□ 1.93
CBX4-204ENST00000495122 ADAMTS12P58397 1594 aa27.09■■□□□ 1.93
CBX4-204ENST00000495122 CHMP7Q8WUX9 453 aaPredicted RBP27.04■■□□□ 1.92
CBX4-204ENST00000495122 ERICH3Q5RHP9 1530 aa26.95■■□□□ 1.91
CBX4-204ENST00000495122 GRIN2AQ12879 1464 aa26.95■■□□□ 1.91
CBX4-204ENST00000495122 CYB5RLQ6IPT4 315 aa26.94■■□□□ 1.9
CBX4-204ENST00000495122 CEP170Q5SW79 1584 aa26.92■■□□□ 1.9
CBX4-204ENST00000495122 SHROOM2Q13796 1616 aa26.86■■□□□ 1.89
CBX4-204ENST00000495122 FHAD1B1AJZ9 1412 aa26.85■■□□□ 1.89
CBX4-204ENST00000495122 NUP160Q12769 1436 aa26.84■■□□□ 1.89
CBX4-204ENST00000495122 ERCC6L2Q5T890 1561 aa26.8■■□□□ 1.88
CBX4-204ENST00000495122 RUSC2Q8N2Y8 1516 aa26.71■■□□□ 1.87
CBX4-204ENST00000495122 CUL7Q14999 1698 aa26.71■■□□□ 1.87
CBX4-204ENST00000495122 KIF27Q86VH2 1401 aa26.57■■□□□ 1.84
CBX4-204ENST00000495122 TRHP20396 242 aaPredicted RBP26.55■■□□□ 1.84
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms