RNA–Protein interactions for RNA: ENST00000612683.1

FDPS-221, Transcript of farnesyl diphosphate synthase, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene FDPS, Length 1,198 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FDPS-221ENST00000612683 NISCHQ9Y2I1 1504 aa36.65■■■■□ 3.46
FDPS-221ENST00000612683 ABCC9O60706 1549 aa32.84■■■□□ 2.85
FDPS-221ENST00000612683 CCDC180Q9P1Z9 1646 aa32.77■■■□□ 2.84
FDPS-221ENST00000612683 RB1CC1Q8TDY2 1594 aa31.23■■■□□ 2.59
FDPS-221ENST00000612683 DCAF8L2P0C7V8 631 aa31.14■■■□□ 2.58
FDPS-221ENST00000612683 NACADO15069 1562 aa31.03■■■□□ 2.56
FDPS-221ENST00000612683 DNAJC5BQ9UF47 199 aa30.8■■■□□ 2.52
FDPS-221ENST00000612683 PABPN1Q86U42 306 aaKnown RBP eCLIP30.67■■■□□ 2.52e-8■□□□□ 9.5
FDPS-221ENST00000612683 MYO15BQ96JP2 1530 aa30.58■■■□□ 2.49
FDPS-221ENST00000612683 UNC13AQ9UPW8 1703 aa30.48■■■□□ 2.47
FDPS-221ENST00000612683 ZCCHC6Q5VYS8 1495 aaKnown RBP30.35■■■□□ 2.45
FDPS-221ENST00000612683 BICRAQ9NZM4 1560 aa30.29■■■□□ 2.44
FDPS-221ENST00000612683 DCAF1Q9Y4B6 1507 aa30.23■■■□□ 2.43
FDPS-221ENST00000612683 SCRIBQ14160 1630 aa29.95■■■□□ 2.38
FDPS-221ENST00000612683 SHROOM4Q9ULL8 1493 aa29.85■■■□□ 2.37
FDPS-221ENST00000612683 CC2D2AQ9P2K1 1620 aa29.62■■■□□ 2.33
FDPS-221ENST00000612683 EIF4G1Q04637 1599 aaKnown RBP29.56■■■□□ 2.32
FDPS-221ENST00000612683 CECR2Q9BXF3 1484 aa29.55■■■□□ 2.32
FDPS-221ENST00000612683 NCAPD3P42695 1498 aa28.67■■■□□ 2.18
FDPS-221ENST00000612683 ATAD2BQ9ULI0 1458 aa28.59■■■□□ 2.17
FDPS-221ENST00000612683 SMARCA4P51532 1647 aa28.55■■■□□ 2.16
FDPS-221ENST00000612683 SMARCA2P51531 1590 aa28.5■■■□□ 2.15
FDPS-221ENST00000612683 BAZ1AQ9NRL2 1556 aaPredicted RBP28.43■■■□□ 2.14
FDPS-221ENST00000612683 HMGXB3Q12766 1538 aa28.41■■■□□ 2.14
FDPS-221ENST00000612683 ERCC6Q03468 1493 aa28.36■■■□□ 2.13
FDPS-221ENST00000612683 BAZ1BQ9UIG0 1483 aaKnown RBP28.34■■■□□ 2.13
FDPS-221ENST00000612683 MROH2BQ7Z745 1585 aa28.26■■■□□ 2.11
FDPS-221ENST00000612683 PEG3Q9GZU2 1588 aa28.24■■■□□ 2.11
FDPS-221ENST00000612683 DNAJC5Q9H3Z4 198 aa28.23■■■□□ 2.11
FDPS-221ENST00000612683 CUX2O14529 1486 aa28.22■■■□□ 2.11
FDPS-221ENST00000612683 NESP48681 1621 aa28.22■■■□□ 2.11
FDPS-221ENST00000612683 LAMC3Q9Y6N6 1575 aa27.99■■■□□ 2.07
FDPS-221ENST00000612683 WIZO95785 1651 aa27.92■■■□□ 2.06
FDPS-221ENST00000612683 PDS5BQ9NTI5 1447 aa27.89■■■□□ 2.06
FDPS-221ENST00000612683 CADPSQ9ULU8 1353 aa27.85■■■□□ 2.05
FDPS-221ENST00000612683 THOC2Q8NI27 1593 aaKnown RBP27.82■■■□□ 2.04
FDPS-221ENST00000612683 KIF21AQ7Z4S6 1674 aa27.8■■■□□ 2.04
FDPS-221ENST00000612683 RSF1Q96T23 1441 aaPredicted RBP27.72■■■□□ 2.03
FDPS-221ENST00000612683 MRC2Q9UBG0 1479 aa27.6■■■□□ 2.01
FDPS-221ENST00000612683 TOP2AP11388 1531 aaKnown RBP27.53■■■□□ 2
FDPS-221ENST00000612683 CEP164Q9UPV0 1460 aa27.51■■■□□ 2
FDPS-221ENST00000612683 FANCD2Q9BXW9 1451 aa27.51■■□□□ 1.99
FDPS-221ENST00000612683 CFTRP13569 1480 aa27.5■■□□□ 1.99
FDPS-221ENST00000612683 WDR62O43379 1518 aa27.48■■□□□ 1.99
FDPS-221ENST00000612683 CCDC88BA6NC98 1476 aa27.29■■□□□ 1.96
FDPS-221ENST00000612683 URB2Q14146 1524 aaKnown RBP27.25■■□□□ 1.95
FDPS-221ENST00000612683 PRDM2Q13029 1718 aa27.15■■□□□ 1.94
FDPS-221ENST00000612683 OSCARQ8IYS5 282 aa27.09■■□□□ 1.93
FDPS-221ENST00000612683 TRIM41Q8WV44 630 aa27.08■■□□□ 1.93
FDPS-221ENST00000612683 TOPBP1Q92547 1522 aa26.98■■□□□ 1.91
FDPS-221ENST00000612683 IFT140Q96RY7 1462 aa26.96■■□□□ 1.91
FDPS-221ENST00000612683 ABCC8Q09428 1581 aa26.94■■□□□ 1.9
FDPS-221ENST00000612683 ZNF608Q9ULD9 1512 aaPredicted RBP26.92■■□□□ 1.9
FDPS-221ENST00000612683 DNMBPQ6XZF7 1577 aa26.86■■□□□ 1.89
FDPS-221ENST00000612683 AQRO60306 1485 aaKnown RBP eCLIP26.73■■□□□ 1.872e-7■■■■□ 26.3
FDPS-221ENST00000612683 EIF4G3O43432 1585 aaKnown RBP26.71■■□□□ 1.87
FDPS-221ENST00000612683 POLA1P09884 1462 aaPredicted RBP26.7■■□□□ 1.87
FDPS-221ENST00000612683 SUPT5HO00267 1087 aaKnown RBP26.7■■□□□ 1.86
FDPS-221ENST00000612683 TARBP1Q13395 1621 aaKnown RBP26.69■■□□□ 1.86
FDPS-221ENST00000612683 SOGA1O94964 1423 aa26.65■■□□□ 1.86
FDPS-221ENST00000612683 RAD54L2Q9Y4B4 1467 aa26.65■■□□□ 1.86
FDPS-221ENST00000612683 FBLN2P98095 1184 aa26.64■■□□□ 1.86
FDPS-221ENST00000612683 TDRD9Q8NDG6 1382 aaKnown RBP26.6■■□□□ 1.85
FDPS-221ENST00000612683 RIMBP3CA6NJZ7 1639 aa26.59■■□□□ 1.85
FDPS-221ENST00000612683 RIMBP3BA6NNM3 1639 aa26.59■■□□□ 1.85
FDPS-221ENST00000612683 RIMBP3Q9UFD9 1639 aa26.59■■□□□ 1.85
FDPS-221ENST00000612683 FGD5Q6ZNL6 1462 aa26.55■■□□□ 1.84
FDPS-221ENST00000612683 CUX1P39880 1505 aa26.53■■□□□ 1.84
FDPS-221ENST00000612683 CHD1O14646 1710 aa26.52■■□□□ 1.84
FDPS-221ENST00000612683 ARHGEF11O15085 1522 aa26.52■■□□□ 1.84
FDPS-221ENST00000612683 CYB5RLQ6IPT4 315 aa26.47■■□□□ 1.83
FDPS-221ENST00000612683 CHMP7Q8WUX9 453 aaPredicted RBP26.43■■□□□ 1.82
FDPS-221ENST00000612683 SNAPC4Q5SXM2 1469 aa26.42■■□□□ 1.82
FDPS-221ENST00000612683 WDR97A6NE52 1622 aa26.39■■□□□ 1.82
FDPS-221ENST00000612683 GRIN2BQ13224 1484 aa26.36■■□□□ 1.81
FDPS-221ENST00000612683 MAGI1Q96QZ7 1491 aaPredicted RBP26.33■■□□□ 1.81
FDPS-221ENST00000612683 GAPVD1Q14C86 1478 aa26.3■■□□□ 1.8
FDPS-221ENST00000612683 ARAP1Q96P48 1450 aa26.26■■□□□ 1.79
FDPS-221ENST00000612683 SYNJ2O15056 1496 aa26.25■■□□□ 1.79
FDPS-221ENST00000612683 ABCA10Q8WWZ4 1543 aa26.24■■□□□ 1.79
FDPS-221ENST00000612683 SYNJ1O43426 1573 aa26.24■■□□□ 1.79
FDPS-221ENST00000612683 WRNQ14191 1432 aaPredicted RBP eCLIP26.21■■□□□ 1.79
FDPS-221ENST00000612683 CLASP1Q7Z460 1538 aa26.2■■□□□ 1.79
FDPS-221ENST00000612683 PBRM1Q86U86 1689 aa26.2■■□□□ 1.78
FDPS-221ENST00000612683 TRHP20396 242 aaPredicted RBP26.18■■□□□ 1.78
FDPS-221ENST00000612683 ABCA5Q8WWZ7 1642 aa26.14■■□□□ 1.78
FDPS-221ENST00000612683 TOP2BQ02880 1626 aa26.1■■□□□ 1.77
FDPS-221ENST00000612683 BIVM-ERCC5R4GMW8 1640 aa26.08■■□□□ 1.77
FDPS-221ENST00000612683 GRIN2AQ12879 1464 aa26■■□□□ 1.75
FDPS-221ENST00000612683 FHAD1B1AJZ9 1412 aa25.97■■□□□ 1.75
FDPS-221ENST00000612683 ADAMTS12P58397 1594 aa25.95■■□□□ 1.74
FDPS-221ENST00000612683 ERICH3Q5RHP9 1530 aa25.91■■□□□ 1.74
FDPS-221ENST00000612683 NUP160Q12769 1436 aa25.9■■□□□ 1.74
FDPS-221ENST00000612683 CEP170Q5SW79 1584 aa25.89■■□□□ 1.73
FDPS-221ENST00000612683 ERCC6L2Q5T890 1561 aa25.84■■□□□ 1.73
FDPS-221ENST00000612683 JPH4Q96JJ6 628 aa25.78■■□□□ 1.72
FDPS-221ENST00000612683 SHROOM2Q13796 1616 aa25.74■■□□□ 1.71
FDPS-221ENST00000612683 PRG4Q92954 1404 aaPredicted RBP25.71■■□□□ 1.71
FDPS-221ENST00000612683 IGF1RP08069 1367 aa25.68■■□□□ 1.7
FDPS-221ENST00000612683 KIF27Q86VH2 1401 aa25.67■■□□□ 1.7
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms