RNA–Protein interactions for RNA: ENST00000595974.5

TRIM28-206, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 665 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-206ENST00000595974 NISCHQ9Y2I1 1504 aa39.78■■■■□ 3.96
TRIM28-206ENST00000595974 CCDC180Q9P1Z9 1646 aa35.55■■■■□ 3.28
TRIM28-206ENST00000595974 ABCC9O60706 1549 aa34.79■■■■□ 3.16
TRIM28-206ENST00000595974 RB1CC1Q8TDY2 1594 aa33.48■■■□□ 2.95
TRIM28-206ENST00000595974 NACADO15069 1562 aa33.4■■■□□ 2.94
TRIM28-206ENST00000595974 MYO15BQ96JP2 1530 aa33.18■■■□□ 2.9
TRIM28-206ENST00000595974 ZCCHC6Q5VYS8 1495 aaKnown RBP33.13■■■□□ 2.89
TRIM28-206ENST00000595974 DCAF8L2P0C7V8 631 aa33.13■■■□□ 2.89
TRIM28-206ENST00000595974 DCAF1Q9Y4B6 1507 aa32.96■■■□□ 2.87
TRIM28-206ENST00000595974 UNC13AQ9UPW8 1703 aa32.78■■■□□ 2.84
TRIM28-206ENST00000595974 BICRAQ9NZM4 1560 aa32.45■■■□□ 2.78
TRIM28-206ENST00000595974 PABPN1Q86U42 306 aaKnown RBP eCLIP32.4■■■□□ 2.784e-7■■□□□ 14.5
TRIM28-206ENST00000595974 SCRIBQ14160 1630 aa32.33■■■□□ 2.77
TRIM28-206ENST00000595974 SHROOM4Q9ULL8 1493 aa32.17■■■□□ 2.74
TRIM28-206ENST00000595974 DNAJC5BQ9UF47 199 aa31.99■■■□□ 2.71
TRIM28-206ENST00000595974 EIF4G1Q04637 1599 aaKnown RBP31.61■■■□□ 2.65
TRIM28-206ENST00000595974 CC2D2AQ9P2K1 1620 aa31.52■■■□□ 2.64
TRIM28-206ENST00000595974 CECR2Q9BXF3 1484 aa31.3■■■□□ 2.6
TRIM28-206ENST00000595974 SMARCA4P51532 1647 aa30.94■■■□□ 2.54
TRIM28-206ENST00000595974 BAZ1AQ9NRL2 1556 aaPredicted RBP30.88■■■□□ 2.53
TRIM28-206ENST00000595974 NCAPD3P42695 1498 aa30.77■■■□□ 2.52
TRIM28-206ENST00000595974 SMARCA2P51531 1590 aa30.77■■■□□ 2.52
TRIM28-206ENST00000595974 ATAD2BQ9ULI0 1458 aa30.76■■■□□ 2.52
TRIM28-206ENST00000595974 HMGXB3Q12766 1538 aa30.68■■■□□ 2.5
TRIM28-206ENST00000595974 PEG3Q9GZU2 1588 aa30.66■■■□□ 2.5
TRIM28-206ENST00000595974 MROH2BQ7Z745 1585 aa30.63■■■□□ 2.49
TRIM28-206ENST00000595974 BAZ1BQ9UIG0 1483 aaKnown RBP30.52■■■□□ 2.48
TRIM28-206ENST00000595974 WIZO95785 1651 aa30.32■■■□□ 2.44
TRIM28-206ENST00000595974 RSF1Q96T23 1441 aaPredicted RBP30.21■■■□□ 2.43
TRIM28-206ENST00000595974 NESP48681 1621 aa30.06■■■□□ 2.4
TRIM28-206ENST00000595974 LAMC3Q9Y6N6 1575 aa30.05■■■□□ 2.4
TRIM28-206ENST00000595974 ERCC6Q03468 1493 aa30.03■■■□□ 2.4
TRIM28-206ENST00000595974 TOP2AP11388 1531 aaKnown RBP30.01■■■□□ 2.4
TRIM28-206ENST00000595974 CADPSQ9ULU8 1353 aa29.84■■■□□ 2.37
TRIM28-206ENST00000595974 CUX2O14529 1486 aa29.81■■■□□ 2.36
TRIM28-206ENST00000595974 PDS5BQ9NTI5 1447 aa29.79■■■□□ 2.36
TRIM28-206ENST00000595974 KIF21AQ7Z4S6 1674 aa29.79■■■□□ 2.36
TRIM28-206ENST00000595974 THOC2Q8NI27 1593 aaKnown RBP29.73■■■□□ 2.35
TRIM28-206ENST00000595974 CFTRP13569 1480 aa29.66■■■□□ 2.34
TRIM28-206ENST00000595974 CCDC88BA6NC98 1476 aa29.6■■■□□ 2.33
TRIM28-206ENST00000595974 PRDM2Q13029 1718 aa29.58■■■□□ 2.33
TRIM28-206ENST00000595974 FANCD2Q9BXW9 1451 aa29.53■■■□□ 2.32
TRIM28-206ENST00000595974 CEP164Q9UPV0 1460 aa29.53■■■□□ 2.32
TRIM28-206ENST00000595974 MRC2Q9UBG0 1479 aa29.52■■■□□ 2.32
TRIM28-206ENST00000595974 WDR62O43379 1518 aa29.45■■■□□ 2.3
TRIM28-206ENST00000595974 URB2Q14146 1524 aaKnown RBP29.25■■■□□ 2.27
TRIM28-206ENST00000595974 SUPT5HO00267 1087 aaKnown RBP29.22■■■□□ 2.27
TRIM28-206ENST00000595974 ABCC8Q09428 1581 aa29.06■■■□□ 2.24
TRIM28-206ENST00000595974 TOPBP1Q92547 1522 aa29.05■■■□□ 2.24
TRIM28-206ENST00000595974 DNMBPQ6XZF7 1577 aa29.04■■■□□ 2.24
TRIM28-206ENST00000595974 DNAJC5Q9H3Z4 198 aa28.98■■■□□ 2.23
TRIM28-206ENST00000595974 IFT140Q96RY7 1462 aa28.91■■■□□ 2.22
TRIM28-206ENST00000595974 POLA1P09884 1462 aaPredicted RBP28.78■■■□□ 2.2
TRIM28-206ENST00000595974 TARBP1Q13395 1621 aaKnown RBP28.77■■■□□ 2.2
TRIM28-206ENST00000595974 CUX1P39880 1505 aa28.76■■■□□ 2.19
TRIM28-206ENST00000595974 ZNF608Q9ULD9 1512 aaPredicted RBP28.75■■■□□ 2.19
TRIM28-206ENST00000595974 EIF4G3O43432 1585 aaKnown RBP28.71■■■□□ 2.19
TRIM28-206ENST00000595974 FGD5Q6ZNL6 1462 aa28.69■■■□□ 2.18
TRIM28-206ENST00000595974 SOGA1O94964 1423 aa28.62■■■□□ 2.17
TRIM28-206ENST00000595974 RAD54L2Q9Y4B4 1467 aa28.62■■■□□ 2.17
TRIM28-206ENST00000595974 WDR97A6NE52 1622 aa28.61■■■□□ 2.17
TRIM28-206ENST00000595974 AQRO60306 1485 aaKnown RBP eCLIP28.54■■■□□ 2.167e-17■■■■□ 23.7
TRIM28-206ENST00000595974 BIVM-ERCC5R4GMW8 1640 aa28.54■■■□□ 2.16
TRIM28-206ENST00000595974 TOP2BQ02880 1626 aa28.51■■■□□ 2.15
TRIM28-206ENST00000595974 WRNQ14191 1432 aaPredicted RBP eCLIP28.51■■■□□ 2.15
TRIM28-206ENST00000595974 SYNJ1O43426 1573 aa28.47■■■□□ 2.15
TRIM28-206ENST00000595974 TDRD9Q8NDG6 1382 aaKnown RBP28.46■■■□□ 2.15
TRIM28-206ENST00000595974 OSCARQ8IYS5 282 aa28.44■■■□□ 2.14
TRIM28-206ENST00000595974 ABCA10Q8WWZ4 1543 aa28.43■■■□□ 2.14
TRIM28-206ENST00000595974 CHD1O14646 1710 aa28.4■■■□□ 2.14
TRIM28-206ENST00000595974 ABCA5Q8WWZ7 1642 aa28.36■■■□□ 2.13
TRIM28-206ENST00000595974 PBRM1Q86U86 1689 aa28.36■■■□□ 2.13
TRIM28-206ENST00000595974 GRIN2BQ13224 1484 aa28.35■■■□□ 2.13
TRIM28-206ENST00000595974 SNAPC4Q5SXM2 1469 aa28.34■■■□□ 2.13
TRIM28-206ENST00000595974 MAGI1Q96QZ7 1491 aaPredicted RBP28.33■■■□□ 2.13
TRIM28-206ENST00000595974 GAPVD1Q14C86 1478 aa28.32■■■□□ 2.12
TRIM28-206ENST00000595974 SYNJ2O15056 1496 aa28.2■■■□□ 2.1
TRIM28-206ENST00000595974 FBLN2P98095 1184 aa28.19■■■□□ 2.1
TRIM28-206ENST00000595974 CHMP7Q8WUX9 453 aaPredicted RBP28.12■■■□□ 2.09
TRIM28-206ENST00000595974 RIMBP3CA6NJZ7 1639 aa28.1■■■□□ 2.09
TRIM28-206ENST00000595974 RIMBP3BA6NNM3 1639 aa28.1■■■□□ 2.09
TRIM28-206ENST00000595974 RIMBP3Q9UFD9 1639 aa28.1■■■□□ 2.09
TRIM28-206ENST00000595974 ERICH3Q5RHP9 1530 aa28.1■■■□□ 2.09
TRIM28-206ENST00000595974 ADAMTS12P58397 1594 aa28.1■■■□□ 2.09
TRIM28-206ENST00000595974 ARHGEF11O15085 1522 aa28.07■■■□□ 2.08
TRIM28-206ENST00000595974 CLASP1Q7Z460 1538 aa28.07■■■□□ 2.08
TRIM28-206ENST00000595974 FHAD1B1AJZ9 1412 aa28■■■□□ 2.07
TRIM28-206ENST00000595974 GRIN2AQ12879 1464 aa27.99■■■□□ 2.07
TRIM28-206ENST00000595974 KIF27Q86VH2 1401 aa27.92■■■□□ 2.06
TRIM28-206ENST00000595974 TRIM41Q8WV44 630 aa27.92■■■□□ 2.06
TRIM28-206ENST00000595974 CEP170Q5SW79 1584 aa27.87■■■□□ 2.05
TRIM28-206ENST00000595974 NUP160Q12769 1436 aa27.87■■■□□ 2.05
TRIM28-206ENST00000595974 CUL7Q14999 1698 aa27.86■■■□□ 2.05
TRIM28-206ENST00000595974 ARAP1Q96P48 1450 aa27.82■■■□□ 2.04
TRIM28-206ENST00000595974 IGF1RP08069 1367 aa27.78■■■□□ 2.04
TRIM28-206ENST00000595974 SHROOM2Q13796 1616 aa27.74■■■□□ 2.03
TRIM28-206ENST00000595974 CYB5RLQ6IPT4 315 aa27.7■■■□□ 2.02
TRIM28-206ENST00000595974 RUSC2Q8N2Y8 1516 aa27.7■■■□□ 2.02
TRIM28-206ENST00000595974 CARMIL1Q5VZK9 1371 aa27.62■■■□□ 2.01
TRIM28-206ENST00000595974 ERCC6L2Q5T890 1561 aa27.61■■■□□ 2.01
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms