Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 TPRKB-207ENST00000484969 592 ntTSL 416.3■□□□□ 0.22e-6■■■■□ 20.1
YBX3P16989 TPRKB-210ENST00000497464 798 ntTSL 216.2■□□□□ 0.182e-6■■■■□ 20.1
YBX3P16989 TPRKB-201ENST00000272424 748 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.082e-6■■■■□ 20.1
YBX3P16989 TPRKB-204ENST00000462166 421 ntTSL 313.48□□□□□ -0.252e-6■■■■□ 20.1
YBX3P16989 TPRKB-209ENST00000489476 536 ntTSL 512.3□□□□□ -0.442e-6■■■■□ 20.1
YBX3P16989 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC20.5■□□□□ 0.875e-7■■■■□ 20.1
YBX3P16989 ZUFSP-203ENST00000471919 1236 ntTSL 520.5■□□□□ 0.875e-7■■■■□ 20.1
YBX3P16989 ZUFSP-202ENST00000368576 2195 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.235e-7■■■■□ 20.1
YBX3P16989 PIAS4-204ENST00000599999 581 ntTSL 313.92□□□□□ -0.183e-6■■■■□ 20.1
YBX3P16989 CNOT7-202ENST00000518021 768 ntTSL 518.14■□□□□ 0.496e-10■■■■□ 20.1
YBX3P16989 CNOT7-212ENST00000524358 700 ntTSL 316.17■□□□□ 0.186e-10■■■■□ 20.1
YBX3P16989 CNOT7-208ENST00000520178 568 ntTSL 515.82■□□□□ 0.126e-10■■■■□ 20.1
YBX3P16989 CNOT7-207ENST00000519998 1909 ntTSL 29.74□□□□□ -0.856e-10■■■■□ 20.1
YBX3P16989 IFI30-202ENST00000597802 411 ntTSL 313.47□□□□□ -0.252e-6■■■■□ 20.1
YBX3P16989 TRAFD1-203ENST00000547063 867 ntTSL 319.07■□□□□ 0.642e-6■■■■□ 20.1
YBX3P16989 TRAFD1-201ENST00000257604 3178 ntAPPRIS P2 TSL 2 BASIC15.79■□□□□ 0.122e-6■■■■□ 20.1
YBX3P16989 TRAFD1-206ENST00000549358 532 ntAPPRIS ALT2 TSL 415.54■□□□□ 0.082e-6■■■■□ 20.1
YBX3P16989 TRAFD1-209ENST00000552896 983 ntAPPRIS ALT2 TSL 314.99□□□□□ -0.012e-6■■■■□ 20.1
YBX3P16989 TRAFD1-207ENST00000550051 1003 ntTSL 1 (best)13.79□□□□□ -0.22e-6■■■■□ 20.1
YBX3P16989 TRAFD1-208ENST00000552890 1043 ntTSL 212.91□□□□□ -0.342e-6■■■■□ 20.1
YBX3P16989 TRAFD1-202ENST00000412615 2697 ntAPPRIS P2 TSL 1 (best) BASIC11.93□□□□□ -0.52e-6■■■■□ 20.1
YBX3P16989 TRAFD1-204ENST00000548092 584 ntTSL 36.18□□□□□ -1.422e-6■■■■□ 20.1
YBX3P16989 DCAF12-201ENST00000361264 3667 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.635e-8■■■■□ 20.1
YBX3P16989 KRT8-202ENST00000546542 765 ntTSL 323.17■■□□□ 1.37e-20■■■■□ 20
YBX3P16989 KRT8-210ENST00000548998 918 ntTSL 523.17■■□□□ 1.37e-20■■■■□ 20
YBX3P16989 ATP6V1B2-205ENST00000523478 572 ntTSL 420.94■□□□□ 0.943e-8■■■■□ 20
YBX3P16989 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.183e-8■■■■□ 20
YBX3P16989 ATP6V1B2-206ENST00000523482 6907 ntTSL 26.24□□□□□ -1.413e-8■■■■□ 20
YBX3P16989 HHLA3-202ENST00000361764 692 ntAPPRIS P3 TSL 2 BASIC18.1■□□□□ 0.496e-6■■■■□ 20
YBX3P16989 HHLA3-205ENST00000486110 473 ntTSL 314.46□□□□□ -0.096e-6■■■■□ 20
YBX3P16989 HHLA3-206ENST00000525653 689 ntTSL 312.1□□□□□ -0.476e-6■■■■□ 20
YBX3P16989 HHLA3-203ENST00000370940 775 ntAPPRIS ALT2 TSL 1 (best) BASIC10.78□□□□□ -0.686e-6■■■■□ 20
YBX3P16989 HHLA3-207ENST00000531950 541 ntAPPRIS ALT2 TSL 5 BASIC9.58□□□□□ -0.886e-6■■■■□ 20
YBX3P16989 HHLA3-201ENST00000359875 898 ntAPPRIS ALT2 TSL 1 (best) BASIC9.1□□□□□ -0.956e-6■■■■□ 20
YBX3P16989 HHLA3-204ENST00000463058 832 ntTSL 28.9□□□□□ -0.986e-6■■■■□ 20
YBX3P16989 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC33.96■■■■□ 3.033e-9■■■■□ 20
YBX3P16989 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC25.94■■□□□ 1.743e-9■■■■□ 20
YBX3P16989 ATRAID-207ENST00000606999 956 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.513e-9■■■■□ 20
YBX3P16989 ATRAID-202ENST00000405489 1059 ntTSL 1 (best) BASIC17.4■□□□□ 0.383e-9■■■■□ 20
YBX3P16989 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC29.68■■■□□ 2.343e-7■■■■□ 20
YBX3P16989 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC29.68■■■□□ 2.343e-7■■■■□ 20
YBX3P16989 SMIM29-210ENST00000637920 1093 ntTSL 224.62■■□□□ 1.533e-7■■■■□ 20
YBX3P16989 SMIM29-203ENST00000413013 806 ntTSL 224.32■■□□□ 1.483e-7■■■■□ 20
YBX3P16989 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC24.22■■□□□ 1.473e-7■■■■□ 20
YBX3P16989 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC23.49■■□□□ 1.353e-7■■■■□ 20
YBX3P16989 SMIM29-204ENST00000463083 1487 ntTSL 222.08■■□□□ 1.123e-7■■■■□ 20
YBX3P16989 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC21.71■■□□□ 1.073e-7■■■■□ 20
YBX3P16989 SMIM29-202ENST00000394990 792 ntTSL 1 (best) BASIC19.92■□□□□ 0.783e-7■■■■□ 20
YBX3P16989 RFC2-207ENST00000480432 871 ntTSL 326.49■■□□□ 1.832e-7■■■■□ 20
YBX3P16989 RFC2-204ENST00000470266 881 ntTSL 513.67□□□□□ -0.222e-7■■■■□ 20
YBX3P16989 RFC2-211ENST00000494019 730 ntTSL 312.84□□□□□ -0.352e-7■■■■□ 20
YBX3P16989 TUBA4A-209ENST00000475683 753 ntTSL 218.42■□□□□ 0.541e-6■■■■□ 20
YBX3P16989 ANKMY1-221ENST00000480230 4640 ntTSL 211.7□□□□□ -0.541e-6■■■■□ 20
YBX3P16989 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.446e-7■■■■□ 20
YBX3P16989 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.346e-7■■■■□ 20
YBX3P16989 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.226e-7■■■■□ 20
YBX3P16989 AKT1-208ENST00000554581 3916 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.46e-7■■■■□ 20
YBX3P16989 AKT1-202ENST00000402615 3913 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.526e-7■■■■□ 20
YBX3P16989 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.955e-6■■■■□ 19.9
YBX3P16989 CNNM4-204ENST00000496186 748 ntTSL 311.41□□□□□ -0.585e-6■■■■□ 19.9
YBX3P16989 RPS4XP2-201ENST00000458402 793 ntBASIC3.71□□□□□ -1.823e-6■■■■□ 19.9
YBX3P16989 ERAL1-205ENST00000577942 698 ntTSL 25.85□□□□□ -1.474e-7■■■■□ 19.9
YBX3P16989 C18orf8-206ENST00000589860 787 ntTSL 519.36■□□□□ 0.695e-6■■■■□ 19.9
YBX3P16989 TPRKB-208ENST00000485758 730 ntTSL 213.56□□□□□ -0.245e-6■■■■□ 19.9
YBX3P16989 PIAS4-202ENST00000593518 555 ntTSL 415.29■□□□□ 0.043e-6■■■■□ 19.9
YBX3P16989 PIAS4-205ENST00000600566 624 ntTSL 213.92□□□□□ -0.183e-6■■■■□ 19.9
YBX3P16989 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC27.28■■□□□ 1.963e-6■■■■□ 19.9
YBX3P16989 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC26.9■■□□□ 1.93e-6■■■■□ 19.9
YBX3P16989 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC26.79■■□□□ 1.883e-6■■■■□ 19.9
YBX3P16989 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC25.26■■□□□ 1.633e-6■■■■□ 19.9
YBX3P16989 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC24.94■■□□□ 1.583e-6■■■■□ 19.9
YBX3P16989 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.413e-6■■■■□ 19.9
YBX3P16989 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC21.77■■□□□ 1.083e-6■■■■□ 19.9
YBX3P16989 DHRS4-208ENST00000559975 699 ntTSL 517.55■□□□□ 0.43e-6■■■■□ 19.9
YBX3P16989 LYRM7-203ENST00000510516 604 ntTSL 2 BASIC15.48■□□□□ 0.075e-6■■■■□ 19.9
YBX3P16989 LYRM7-201ENST00000379380 6351 ntAPPRIS P1 TSL 1 (best) BASIC9.66□□□□□ -0.865e-6■■■■□ 19.9
YBX3P16989 FAF1-205ENST00000494400 2127 ntTSL 210.21□□□□□ -0.782e-7■■■■□ 19.9
YBX3P16989 NCSTN-205ENST00000424754 659 ntTSL 512□□□□□ -0.494e-7■■■■□ 19.9
YBX3P16989 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.47e-12■■■■□ 19.9
YBX3P16989 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC17.38■□□□□ 0.377e-12■■■■□ 19.9
YBX3P16989 TRAK1-201ENST00000327628 5293 ntAPPRIS P2 TSL 1 (best) BASIC13.53□□□□□ -0.247e-12■■■■□ 19.9
YBX3P16989 CD151-202ENST00000397420 1648 ntAPPRIS P2 TSL 1 (best) BASIC35.67■■■■□ 3.38e-17■■■■□ 19.9
YBX3P16989 CD151-210ENST00000526661 894 ntTSL 228.14■■■□□ 2.18e-17■■■■□ 19.9
YBX3P16989 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC27.06■■□□□ 1.928e-17■■■■□ 19.9
YBX3P16989 CD151-211ENST00000526693 771 ntTSL 325.85■■□□□ 1.738e-17■■■■□ 19.9
YBX3P16989 CD151-212ENST00000527341 797 ntTSL 324.95■■□□□ 1.588e-17■■■■□ 19.9
YBX3P16989 CD151-204ENST00000524748 793 ntTSL 524.95■■□□□ 1.588e-17■■■■□ 19.9
YBX3P16989 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC23.54■■□□□ 1.368e-17■■■■□ 19.9
YBX3P16989 CD151-215ENST00000529810 608 ntTSL 323.42■■□□□ 1.348e-17■■■■□ 19.9
YBX3P16989 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC23.28■■□□□ 1.328e-17■■■■□ 19.9
YBX3P16989 CD151-220ENST00000532045 1803 ntTSL 521.22■□□□□ 0.998e-17■■■■□ 19.9
YBX3P16989 CD151-217ENST00000530320 648 ntTSL 318.7■□□□□ 0.588e-17■■■■□ 19.9
YBX3P16989 CD151-218ENST00000530726 1407 ntTSL 517.47■□□□□ 0.398e-17■■■■□ 19.9
YBX3P16989 PRKAR1B-202ENST00000400758 888 ntTSL 332.95■■■□□ 2.871e-6■■■■□ 19.9
YBX3P16989 AP2S1-206ENST00000598027 355 ntTSL 28.7□□□□□ -1.022e-8■■■■□ 19.9
YBX3P16989 HSBP1-202ENST00000567382 889 ntTSL 232.25■■■□□ 2.754e-10■■■■□ 19.9
YBX3P16989 HSBP1-204ENST00000570259 1020 ntAPPRIS P1 TSL 3 BASIC15.25■□□□□ 0.034e-10■■■■□ 19.9
YBX3P16989 HSBP1-201ENST00000433866 8784 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.624e-10■■■■□ 19.9
YBX3P16989 HSBP1-203ENST00000569301 551 ntTSL 26.9□□□□□ -1.34e-10■■■■□ 19.9
YBX3P16989 STARD3NL-206ENST00000453225 859 ntTSL 314.2□□□□□ -0.143e-9■■■■□ 19.9
Retrieved 100 of 29,075 protein–RNA pairs in 852 ms