RNA–Protein interactions for RNA: ENST00000550051.5

TRAFD1-207, Transcript of TRAF-type zinc finger domain containing 1, humanhuman

TSL 1 (best)

Gene TRAFD1, Length 1,003 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAFD1-207ENST00000550051 NISCHQ9Y2I1 1504 aa24.95■■□□□ 1.58
TRAFD1-207ENST00000550051 ABCC9O60706 1549 aa22.56■■□□□ 1.2
TRAFD1-207ENST00000550051 CCDC180Q9P1Z9 1646 aa22.44■■□□□ 1.18
TRAFD1-207ENST00000550051 AEBP2Q6ZN18 517 aaPredicted RBP21.93■■□□□ 1.1
TRAFD1-207ENST00000550051 CHIC1Q5VXU3 224 aa21.6■■□□□ 1.05
TRAFD1-207ENST00000550051 RB1CC1Q8TDY2 1594 aa21.44■■□□□ 1.02
TRAFD1-207ENST00000550051 DNAJC5BQ9UF47 199 aa21.39■■□□□ 1.01
TRAFD1-207ENST00000550051 NACADO15069 1562 aa21.28■■□□□ 1
TRAFD1-207ENST00000550051 DCAF8L2P0C7V8 631 aa21.11■□□□□ 0.97
TRAFD1-207ENST00000550051 PABPN1Q86U42 306 aaKnown RBP eCLIP21.01■□□□□ 0.95
TRAFD1-207ENST00000550051 MYO15BQ96JP2 1530 aa20.98■□□□□ 0.95
TRAFD1-207ENST00000550051 UNC13AQ9UPW8 1703 aa20.95■□□□□ 0.94
TRAFD1-207ENST00000550051 BICRAQ9NZM4 1560 aa20.83■□□□□ 0.92
TRAFD1-207ENST00000550051 DCAF1Q9Y4B6 1507 aa20.63■□□□□ 0.89
TRAFD1-207ENST00000550051 ZCCHC6Q5VYS8 1495 aaKnown RBP20.6■□□□□ 0.89
TRAFD1-207ENST00000550051 SHROOM4Q9ULL8 1493 aa20.56■□□□□ 0.88
TRAFD1-207ENST00000550051 CC2D2AQ9P2K1 1620 aa20.39■□□□□ 0.86
TRAFD1-207ENST00000550051 SCRIBQ14160 1630 aa20.37■□□□□ 0.85
TRAFD1-207ENST00000550051 CECR2Q9BXF3 1484 aa20.37■□□□□ 0.85
TRAFD1-207ENST00000550051 EIF4G1Q04637 1599 aaKnown RBP20.31■□□□□ 0.84
TRAFD1-207ENST00000550051 DNAJC5Q9H3Z4 198 aa19.8■□□□□ 0.76
TRAFD1-207ENST00000550051 NCAPD3P42695 1498 aa19.67■□□□□ 0.74
TRAFD1-207ENST00000550051 CUX2O14529 1486 aa19.55■□□□□ 0.72
TRAFD1-207ENST00000550051 ATAD2BQ9ULI0 1458 aa19.55■□□□□ 0.72
TRAFD1-207ENST00000550051 SMARCA2P51531 1590 aa19.49■□□□□ 0.71
TRAFD1-207ENST00000550051 ERCC6Q03468 1493 aa19.48■□□□□ 0.71
TRAFD1-207ENST00000550051 SMARCA4P51532 1647 aa19.46■□□□□ 0.71
TRAFD1-207ENST00000550051 HMGXB3Q12766 1538 aa19.46■□□□□ 0.71
TRAFD1-207ENST00000550051 BAZ1AQ9NRL2 1556 aaPredicted RBP19.36■□□□□ 0.69
TRAFD1-207ENST00000550051 NESP48681 1621 aa19.34■□□□□ 0.69
TRAFD1-207ENST00000550051 PEG3Q9GZU2 1588 aa19.32■□□□□ 0.68
TRAFD1-207ENST00000550051 BAZ1BQ9UIG0 1483 aaKnown RBP19.32■□□□□ 0.68
TRAFD1-207ENST00000550051 LAMC3Q9Y6N6 1575 aa19.22■□□□□ 0.67
TRAFD1-207ENST00000550051 MROH2BQ7Z745 1585 aa19.19■□□□□ 0.66
TRAFD1-207ENST00000550051 THOC2Q8NI27 1593 aaKnown RBP19.16■□□□□ 0.66
TRAFD1-207ENST00000550051 PDS5BQ9NTI5 1447 aa19.13■□□□□ 0.65
TRAFD1-207ENST00000550051 PHF23Q9BUL5 403 aaPredicted RBP19.1■□□□□ 0.65
TRAFD1-207ENST00000550051 KIF21AQ7Z4S6 1674 aa19.08■□□□□ 0.64
TRAFD1-207ENST00000550051 CADPSQ9ULU8 1353 aa19.06■□□□□ 0.64
TRAFD1-207ENST00000550051 WIZO95785 1651 aa18.95■□□□□ 0.62
TRAFD1-207ENST00000550051 MRC2Q9UBG0 1479 aa18.93■□□□□ 0.62
TRAFD1-207ENST00000550051 WDR62O43379 1518 aa18.9■□□□□ 0.62
TRAFD1-207ENST00000550051 CEP164Q9UPV0 1460 aa18.82■□□□□ 0.6
TRAFD1-207ENST00000550051 CFTRP13569 1480 aa18.79■□□□□ 0.6
TRAFD1-207ENST00000550051 FANCD2Q9BXW9 1451 aa18.79■□□□□ 0.6
TRAFD1-207ENST00000550051 RSF1Q96T23 1441 aaPredicted RBP18.76■□□□□ 0.59
TRAFD1-207ENST00000550051 TRIM41Q8WV44 630 aa18.76■□□□□ 0.59
TRAFD1-207ENST00000550051 TOP2AP11388 1531 aaKnown RBP18.69■□□□□ 0.58
TRAFD1-207ENST00000550051 OSCARQ8IYS5 282 aa18.69■□□□□ 0.58
TRAFD1-207ENST00000550051 URB2Q14146 1524 aaKnown RBP18.64■□□□□ 0.58
TRAFD1-207ENST00000550051 PRDM2Q13029 1718 aa18.55■□□□□ 0.56
TRAFD1-207ENST00000550051 CCDC88BA6NC98 1476 aa18.52■□□□□ 0.55
TRAFD1-207ENST00000550051 IFT140Q96RY7 1462 aa18.47■□□□□ 0.55
TRAFD1-207ENST00000550051 ZNF608Q9ULD9 1512 aaPredicted RBP18.44■□□□□ 0.54
TRAFD1-207ENST00000550051 ABCC8Q09428 1581 aa18.43■□□□□ 0.54
TRAFD1-207ENST00000550051 SENP3Q9H4L4 574 aaPredicted RBP18.42■□□□□ 0.54
TRAFD1-207ENST00000550051 TOPBP1Q92547 1522 aa18.42■□□□□ 0.54
TRAFD1-207ENST00000550051 RIMBP3CA6NJZ7 1639 aa18.38■□□□□ 0.53
TRAFD1-207ENST00000550051 RIMBP3BA6NNM3 1639 aa18.38■□□□□ 0.53
TRAFD1-207ENST00000550051 RIMBP3Q9UFD9 1639 aa18.38■□□□□ 0.53
TRAFD1-207ENST00000550051 DNMBPQ6XZF7 1577 aa18.34■□□□□ 0.53
TRAFD1-207ENST00000550051 ARHGEF11O15085 1522 aa18.31■□□□□ 0.52
TRAFD1-207ENST00000550051 EIF4G3O43432 1585 aaKnown RBP18.3■□□□□ 0.52
TRAFD1-207ENST00000550051 TARBP1Q13395 1621 aaKnown RBP18.28■□□□□ 0.52
TRAFD1-207ENST00000550051 AQRO60306 1485 aaKnown RBP eCLIP18.26■□□□□ 0.51
TRAFD1-207ENST00000550051 CYB5RLQ6IPT4 315 aa18.23■□□□□ 0.51
TRAFD1-207ENST00000550051 POLA1P09884 1462 aaPredicted RBP18.22■□□□□ 0.51
TRAFD1-207ENST00000550051 CHD1O14646 1710 aa18.2■□□□□ 0.5
TRAFD1-207ENST00000550051 SOGA1O94964 1423 aa18.17■□□□□ 0.5
TRAFD1-207ENST00000550051 FBLN2P98095 1184 aa18.17■□□□□ 0.5
TRAFD1-207ENST00000550051 RAD54L2Q9Y4B4 1467 aa18.14■□□□□ 0.5
TRAFD1-207ENST00000550051 TDRD9Q8NDG6 1382 aaKnown RBP18.14■□□□□ 0.49
TRAFD1-207ENST00000550051 ARAP1Q96P48 1450 aa18.11■□□□□ 0.49
TRAFD1-207ENST00000550051 WDR97A6NE52 1622 aa18.1■□□□□ 0.49
TRAFD1-207ENST00000550051 FGD5Q6ZNL6 1462 aa18.07■□□□□ 0.48
TRAFD1-207ENST00000550051 TRHP20396 242 aaPredicted RBP18.05■□□□□ 0.48
TRAFD1-207ENST00000550051 CHMP7Q8WUX9 453 aaPredicted RBP18.05■□□□□ 0.48
TRAFD1-207ENST00000550051 SNAPC4Q5SXM2 1469 aa18.04■□□□□ 0.48
TRAFD1-207ENST00000550051 CUX1P39880 1505 aa18.03■□□□□ 0.48
TRAFD1-207ENST00000550051 MAGI1Q96QZ7 1491 aaPredicted RBP18.03■□□□□ 0.48
TRAFD1-207ENST00000550051 CLASP1Q7Z460 1538 aa18.02■□□□□ 0.47
TRAFD1-207ENST00000550051 GRIN2BQ13224 1484 aa18.01■□□□□ 0.47
TRAFD1-207ENST00000550051 SYNJ1O43426 1573 aa17.99■□□□□ 0.47
TRAFD1-207ENST00000550051 SYNJ2O15056 1496 aa17.97■□□□□ 0.47
TRAFD1-207ENST00000550051 GAPVD1Q14C86 1478 aa17.93■□□□□ 0.46
TRAFD1-207ENST00000550051 PBRM1Q86U86 1689 aa17.89■□□□□ 0.45
TRAFD1-207ENST00000550051 ABCA10Q8WWZ4 1543 aa17.88■□□□□ 0.45
TRAFD1-207ENST00000550051 ABCA5Q8WWZ7 1642 aa17.84■□□□□ 0.45
TRAFD1-207ENST00000550051 WRNQ14191 1432 aaPredicted RBP eCLIP17.8■□□□□ 0.44
TRAFD1-207ENST00000550051 SUPT5HO00267 1087 aaKnown RBP17.78■□□□□ 0.44
TRAFD1-207ENST00000550051 GRIN2AQ12879 1464 aa17.76■□□□□ 0.43
TRAFD1-207ENST00000550051 NUP160Q12769 1436 aa17.73■□□□□ 0.43
TRAFD1-207ENST00000550051 TOP2BQ02880 1626 aa17.72■□□□□ 0.43
TRAFD1-207ENST00000550051 BIVM-ERCC5R4GMW8 1640 aa17.71■□□□□ 0.43
TRAFD1-207ENST00000550051 FHAD1B1AJZ9 1412 aa17.71■□□□□ 0.43
TRAFD1-207ENST00000550051 ERCC6L2Q5T890 1561 aa17.7■□□□□ 0.42
TRAFD1-207ENST00000550051 ADAMTS12P58397 1594 aa17.7■□□□□ 0.42
TRAFD1-207ENST00000550051 CEP170Q5SW79 1584 aa17.69■□□□□ 0.42
TRAFD1-207ENST00000550051 SHROOM2Q13796 1616 aa17.67■□□□□ 0.42
TRAFD1-207ENST00000550051 ERICH3Q5RHP9 1530 aa17.67■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 95 ms