RNA–Protein interactions for RNA: ENST00000412615.6

TRAFD1-202, Transcript of TRAF-type zinc finger domain containing 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene TRAFD1, Length 2,697 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAFD1-202ENST00000412615 NISCHQ9Y2I1 1504 aa24.32■■□□□ 1.48
TRAFD1-202ENST00000412615 CCDC180Q9P1Z9 1646 aa20.82■□□□□ 0.92
TRAFD1-202ENST00000412615 ZCCHC6Q5VYS8 1495 aaKnown RBP20.54■□□□□ 0.88
TRAFD1-202ENST00000412615 SHROOM4Q9ULL8 1493 aa20.43■□□□□ 0.86
TRAFD1-202ENST00000412615 DCAF8L2P0C7V8 631 aa20.1■□□□□ 0.81
TRAFD1-202ENST00000412615 DCAF1Q9Y4B6 1507 aa20.05■□□□□ 0.8
TRAFD1-202ENST00000412615 SUPT5HO00267 1087 aaKnown RBP19.99■□□□□ 0.79
TRAFD1-202ENST00000412615 MYO15BQ96JP2 1530 aa19.57■□□□□ 0.72
TRAFD1-202ENST00000412615 CHIC1Q5VXU3 224 aa19.42■□□□□ 0.7
TRAFD1-202ENST00000412615 SCRIBQ14160 1630 aa19.35■□□□□ 0.69
TRAFD1-202ENST00000412615 ABCC9O60706 1549 aa19.33■□□□□ 0.68
TRAFD1-202ENST00000412615 NACADO15069 1562 aa19.3■□□□□ 0.68
TRAFD1-202ENST00000412615 RSF1Q96T23 1441 aaPredicted RBP19.15■□□□□ 0.66
TRAFD1-202ENST00000412615 RB1CC1Q8TDY2 1594 aa19■□□□□ 0.63
TRAFD1-202ENST00000412615 CECR2Q9BXF3 1484 aa18.91■□□□□ 0.62
TRAFD1-202ENST00000412615 MROH2BQ7Z745 1585 aa18.84■□□□□ 0.61
TRAFD1-202ENST00000412615 LOC105371045A0A1W2PR82 267 aa18.75■□□□□ 0.59
TRAFD1-202ENST00000412615 TRIM41Q8WV44 630 aa18.73■□□□□ 0.59
TRAFD1-202ENST00000412615 BAZ1AQ9NRL2 1556 aaPredicted RBP18.72■□□□□ 0.59
TRAFD1-202ENST00000412615 WIZO95785 1651 aa18.71■□□□□ 0.59
TRAFD1-202ENST00000412615 UNC13AQ9UPW8 1703 aa18.6■□□□□ 0.57
TRAFD1-202ENST00000412615 PCGF6Q9BYE7 350 aa18.57■□□□□ 0.56
TRAFD1-202ENST00000412615 SMARCA4P51532 1647 aa18.55■□□□□ 0.56
TRAFD1-202ENST00000412615 HRCP23327 699 aa18.51■□□□□ 0.55
TRAFD1-202ENST00000412615 TOP2AP11388 1531 aaKnown RBP18.5■□□□□ 0.55
TRAFD1-202ENST00000412615 FAM9AQ8IZU1 332 aaPredicted RBP18.45■□□□□ 0.54
TRAFD1-202ENST00000412615 BICRAQ9NZM4 1560 aa18.42■□□□□ 0.54
TRAFD1-202ENST00000412615 EIF4G1Q04637 1599 aaKnown RBP18.42■□□□□ 0.54
TRAFD1-202ENST00000412615 PABPN1Q86U42 306 aaKnown RBP eCLIP18.4■□□□□ 0.54
TRAFD1-202ENST00000412615 CCDC88BA6NC98 1476 aa18.38■□□□□ 0.53
TRAFD1-202ENST00000412615 TRIM26Q12899 539 aaPredicted RBP18.36■□□□□ 0.53
TRAFD1-202ENST00000412615 SMARCA2P51531 1590 aa18.35■□□□□ 0.53
TRAFD1-202ENST00000412615 PEG3Q9GZU2 1588 aa18.26■□□□□ 0.51
TRAFD1-202ENST00000412615 EHMT2Q96KQ7 1210 aa18.21■□□□□ 0.51
TRAFD1-202ENST00000412615 ABCC8Q09428 1581 aa18.2■□□□□ 0.5
TRAFD1-202ENST00000412615 ATAD2BQ9ULI0 1458 aa18.12■□□□□ 0.49
TRAFD1-202ENST00000412615 BAZ1BQ9UIG0 1483 aaKnown RBP18.07■□□□□ 0.48
TRAFD1-202ENST00000412615 EEA1Q15075 1411 aa18.06■□□□□ 0.48
TRAFD1-202ENST00000412615 SOGA1O94964 1423 aa18.02■□□□□ 0.48
TRAFD1-202ENST00000412615 PPARGC1BQ86YN6 1023 aaKnown RBP18.02■□□□□ 0.47
TRAFD1-202ENST00000412615 WRNQ14191 1432 aaPredicted RBP eCLIP18.01■□□□□ 0.47
TRAFD1-202ENST00000412615 CSRNP3Q8WYN3 585 aa17.98■□□□□ 0.47
TRAFD1-202ENST00000412615 ZEB1P37275 1124 aaPredicted RBP17.95■□□□□ 0.46
TRAFD1-202ENST00000412615 TNIKQ9UKE5 1360 aa17.94■□□□□ 0.46
TRAFD1-202ENST00000412615 RUSC2Q8N2Y8 1516 aa17.91■□□□□ 0.46
TRAFD1-202ENST00000412615 CEP162Q5TB80 1403 aa17.89■□□□□ 0.45
TRAFD1-202ENST00000412615 SYNJ1O43426 1573 aa17.88■□□□□ 0.45
TRAFD1-202ENST00000412615 NCAPD3P42695 1498 aa17.85■□□□□ 0.45
TRAFD1-202ENST00000412615 GOLGA3Q08378 1498 aa17.85■□□□□ 0.45
TRAFD1-202ENST00000412615 UBTFP17480 764 aaKnown RBP17.85■□□□□ 0.45
TRAFD1-202ENST00000412615 HMGXB3Q12766 1538 aa17.83■□□□□ 0.44
TRAFD1-202ENST00000412615 CEP164Q9UPV0 1460 aa17.78■□□□□ 0.44
TRAFD1-202ENST00000412615 KIF21BO75037 1637 aa17.75■□□□□ 0.43
TRAFD1-202ENST00000412615 TOP2BQ02880 1626 aa17.73■□□□□ 0.43
TRAFD1-202ENST00000412615 BIVM-ERCC5R4GMW8 1640 aa17.67■□□□□ 0.42
TRAFD1-202ENST00000412615 CFTRP13569 1480 aa17.63■□□□□ 0.41
TRAFD1-202ENST00000412615 CLIP1P30622 1438 aa17.62■□□□□ 0.41
TRAFD1-202ENST00000412615 RAPGEF2Q9Y4G8 1499 aa17.61■□□□□ 0.41
TRAFD1-202ENST00000412615 TTBK1Q5TCY1 1321 aaPredicted RBP17.59■□□□□ 0.41
TRAFD1-202ENST00000412615 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.57■□□□□ 0.4
TRAFD1-202ENST00000412615 CCER1Q8TC90 406 aaPredicted RBP17.57■□□□□ 0.4
TRAFD1-202ENST00000412615 CUX1P39880 1505 aa17.56■□□□□ 0.4
TRAFD1-202ENST00000412615 VPS8Q8N3P4 1428 aa17.53■□□□□ 0.4
TRAFD1-202ENST00000412615 ERICH3Q5RHP9 1530 aa17.52■□□□□ 0.4
TRAFD1-202ENST00000412615 PRXQ9BXM0 1461 aa17.52■□□□□ 0.39
TRAFD1-202ENST00000412615 KIF27Q86VH2 1401 aa17.5■□□□□ 0.39
TRAFD1-202ENST00000412615 CADPSQ9ULU8 1353 aa17.48■□□□□ 0.39
TRAFD1-202ENST00000412615 APLP2Q06481 763 aa17.47■□□□□ 0.39
TRAFD1-202ENST00000412615 PRDM2Q13029 1718 aa17.46■□□□□ 0.39
TRAFD1-202ENST00000412615 RANGAP1P46060 587 aaPredicted RBP17.42■□□□□ 0.38
TRAFD1-202ENST00000412615 CC2D2AQ9P2K1 1620 aa17.42■□□□□ 0.38
TRAFD1-202ENST00000412615 ARAP1Q96P48 1450 aa17.33■□□□□ 0.36
TRAFD1-202ENST00000412615 CUX2O14529 1486 aa17.32■□□□□ 0.36
TRAFD1-202ENST00000412615 IGF1RP08069 1367 aa17.3■□□□□ 0.36
TRAFD1-202ENST00000412615 FGD5Q6ZNL6 1462 aa17.29■□□□□ 0.36
TRAFD1-202ENST00000412615 HNRNPUL2Q1KMD3 747 aaKnown RBP17.29■□□□□ 0.36
TRAFD1-202ENST00000412615 FANCD2Q9BXW9 1451 aa17.28■□□□□ 0.36
TRAFD1-202ENST00000412615 CARMIL1Q5VZK9 1371 aa17.23■□□□□ 0.35
TRAFD1-202ENST00000412615 ARHGAP35Q9NRY4 1499 aa17.23■□□□□ 0.35
TRAFD1-202ENST00000412615 DNMBPQ6XZF7 1577 aa17.19■□□□□ 0.34
TRAFD1-202ENST00000412615 KANK4Q5T7N3 995 aaPredicted RBP17.18■□□□□ 0.34
TRAFD1-202ENST00000412615 TOPBP1Q92547 1522 aa17.14■□□□□ 0.33
TRAFD1-202ENST00000412615 ABCA10Q8WWZ4 1543 aa17.13■□□□□ 0.33
TRAFD1-202ENST00000412615 NESP48681 1621 aa17.13■□□□□ 0.33
TRAFD1-202ENST00000412615 DIEXFQ68CQ4 756 aaKnown RBP17.12■□□□□ 0.33
TRAFD1-202ENST00000412615 POLA1P09884 1462 aaPredicted RBP17.11■□□□□ 0.33
TRAFD1-202ENST00000412615 LAMC3Q9Y6N6 1575 aa17.11■□□□□ 0.33
TRAFD1-202ENST00000412615 RRBP1Q9P2E9 1410 aaKnown RBP17.11■□□□□ 0.33
TRAFD1-202ENST00000412615 RAD54L2Q9Y4B4 1467 aa17.1■□□□□ 0.33
TRAFD1-202ENST00000412615 ZNF316A6NFI3 1004 aaPredicted RBP17.08■□□□□ 0.32
TRAFD1-202ENST00000412615 MAP3K1Q13233 1512 aa17.08■□□□□ 0.32
TRAFD1-202ENST00000412615 CLSPNQ9HAW4 1339 aa17.05■□□□□ 0.32
TRAFD1-202ENST00000412615 CCNB3Q8WWL7 1395 aa17.04■□□□□ 0.32
TRAFD1-202ENST00000412615 FHAD1B1AJZ9 1412 aa17.04■□□□□ 0.32
TRAFD1-202ENST00000412615 PDS5BQ9NTI5 1447 aa17.02■□□□□ 0.32
TRAFD1-202ENST00000412615 CUL7Q14999 1698 aa17.02■□□□□ 0.32
TRAFD1-202ENST00000412615 TIAM1Q13009 1591 aa17.02■□□□□ 0.31
TRAFD1-202ENST00000412615 URB2Q14146 1524 aaKnown RBP17.01■□□□□ 0.31
TRAFD1-202ENST00000412615 DHX57Q6P158 1386 aaKnown RBP16.98■□□□□ 0.31
TRAFD1-202ENST00000412615 EFCAB5A4FU69 1503 aa16.96■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms