RNA–Protein interactions for RNA: ENST00000552896.1

TRAFD1-209, Transcript of TRAF-type zinc finger domain containing 1, humanhuman

APPRIS ALT2 TSL 3

Gene TRAFD1, Length 983 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAFD1-209ENST00000552896 NISCHQ9Y2I1 1504 aa28.55■■■□□ 2.16
TRAFD1-209ENST00000552896 CCDC180Q9P1Z9 1646 aa25.52■■□□□ 1.68
TRAFD1-209ENST00000552896 AEBP2Q6ZN18 517 aaPredicted RBP24.73■■□□□ 1.55
TRAFD1-209ENST00000552896 ABCC9O60706 1549 aa24.65■■□□□ 1.54
TRAFD1-209ENST00000552896 RB1CC1Q8TDY2 1594 aa23.87■■□□□ 1.41
TRAFD1-209ENST00000552896 NACADO15069 1562 aa23.86■■□□□ 1.41
TRAFD1-209ENST00000552896 ZCCHC6Q5VYS8 1495 aaKnown RBP23.85■■□□□ 1.41
TRAFD1-209ENST00000552896 MYO15BQ96JP2 1530 aa23.78■■□□□ 1.4
TRAFD1-209ENST00000552896 DCAF1Q9Y4B6 1507 aa23.7■■□□□ 1.38
TRAFD1-209ENST00000552896 DCAF8L2P0C7V8 631 aa23.54■■□□□ 1.36
TRAFD1-209ENST00000552896 UNC13AQ9UPW8 1703 aa23.47■■□□□ 1.35
TRAFD1-209ENST00000552896 CHIC1Q5VXU3 224 aa23.43■■□□□ 1.34
TRAFD1-209ENST00000552896 SCRIBQ14160 1630 aa23.17■■□□□ 1.3
TRAFD1-209ENST00000552896 BICRAQ9NZM4 1560 aa23.14■■□□□ 1.29
TRAFD1-209ENST00000552896 SHROOM4Q9ULL8 1493 aa22.98■■□□□ 1.27
TRAFD1-209ENST00000552896 PABPN1Q86U42 306 aaKnown RBP eCLIP22.91■■□□□ 1.26
TRAFD1-209ENST00000552896 EIF4G1Q04637 1599 aaKnown RBP22.51■■□□□ 1.19
TRAFD1-209ENST00000552896 CC2D2AQ9P2K1 1620 aa22.4■■□□□ 1.18
TRAFD1-209ENST00000552896 DNAJC5BQ9UF47 199 aa22.4■■□□□ 1.18
TRAFD1-209ENST00000552896 SMARCA4P51532 1647 aa22.2■■□□□ 1.15
TRAFD1-209ENST00000552896 BAZ1AQ9NRL2 1556 aaPredicted RBP22.16■■□□□ 1.14
TRAFD1-209ENST00000552896 CECR2Q9BXF3 1484 aa22.16■■□□□ 1.14
TRAFD1-209ENST00000552896 SMARCA2P51531 1590 aa22.02■■□□□ 1.12
TRAFD1-209ENST00000552896 PEG3Q9GZU2 1588 aa22.01■■□□□ 1.11
TRAFD1-209ENST00000552896 MROH2BQ7Z745 1585 aa21.98■■□□□ 1.11
TRAFD1-209ENST00000552896 ATAD2BQ9ULI0 1458 aa21.96■■□□□ 1.11
TRAFD1-209ENST00000552896 HMGXB3Q12766 1538 aa21.96■■□□□ 1.11
TRAFD1-209ENST00000552896 NCAPD3P42695 1498 aa21.94■■□□□ 1.1
TRAFD1-209ENST00000552896 BAZ1BQ9UIG0 1483 aaKnown RBP21.82■■□□□ 1.08
TRAFD1-209ENST00000552896 WIZO95785 1651 aa21.8■■□□□ 1.08
TRAFD1-209ENST00000552896 RSF1Q96T23 1441 aaPredicted RBP21.72■■□□□ 1.07
TRAFD1-209ENST00000552896 TOP2AP11388 1531 aaKnown RBP21.6■■□□□ 1.05
TRAFD1-209ENST00000552896 LAMC3Q9Y6N6 1575 aa21.44■■□□□ 1.02
TRAFD1-209ENST00000552896 NESP48681 1621 aa21.37■■□□□ 1.01
TRAFD1-209ENST00000552896 PRDM2Q13029 1718 aa21.32■■□□□ 1
TRAFD1-209ENST00000552896 KIF21AQ7Z4S6 1674 aa21.28■■□□□ 1
TRAFD1-209ENST00000552896 ERCC6Q03468 1493 aa21.26■□□□□ 0.99
TRAFD1-209ENST00000552896 CADPSQ9ULU8 1353 aa21.26■□□□□ 0.99
TRAFD1-209ENST00000552896 CCDC88BA6NC98 1476 aa21.24■□□□□ 0.99
TRAFD1-209ENST00000552896 SENP3Q9H4L4 574 aaPredicted RBP21.23■□□□□ 0.99
TRAFD1-209ENST00000552896 CFTRP13569 1480 aa21.21■□□□□ 0.99
TRAFD1-209ENST00000552896 PDS5BQ9NTI5 1447 aa21.19■□□□□ 0.98
TRAFD1-209ENST00000552896 THOC2Q8NI27 1593 aaKnown RBP21.18■□□□□ 0.98
TRAFD1-209ENST00000552896 SUPT5HO00267 1087 aaKnown RBP21.08■□□□□ 0.97
TRAFD1-209ENST00000552896 CUX2O14529 1486 aa21.07■□□□□ 0.96
TRAFD1-209ENST00000552896 FANCD2Q9BXW9 1451 aa21.07■□□□□ 0.96
TRAFD1-209ENST00000552896 CEP164Q9UPV0 1460 aa21.07■□□□□ 0.96
TRAFD1-209ENST00000552896 MRC2Q9UBG0 1479 aa21.01■□□□□ 0.95
TRAFD1-209ENST00000552896 WDR62O43379 1518 aa20.99■□□□□ 0.95
TRAFD1-209ENST00000552896 PHF23Q9BUL5 403 aaPredicted RBP20.88■□□□□ 0.93
TRAFD1-209ENST00000552896 URB2Q14146 1524 aaKnown RBP20.87■□□□□ 0.93
TRAFD1-209ENST00000552896 DNMBPQ6XZF7 1577 aa20.8■□□□□ 0.92
TRAFD1-209ENST00000552896 ABCC8Q09428 1581 aa20.77■□□□□ 0.92
TRAFD1-209ENST00000552896 TOPBP1Q92547 1522 aa20.76■□□□□ 0.91
TRAFD1-209ENST00000552896 CUX1P39880 1505 aa20.64■□□□□ 0.9
TRAFD1-209ENST00000552896 IFT140Q96RY7 1462 aa20.61■□□□□ 0.89
TRAFD1-209ENST00000552896 BIVM-ERCC5R4GMW8 1640 aa20.6■□□□□ 0.89
TRAFD1-209ENST00000552896 TARBP1Q13395 1621 aaKnown RBP20.59■□□□□ 0.89
TRAFD1-209ENST00000552896 POLA1P09884 1462 aaPredicted RBP20.58■□□□□ 0.89
TRAFD1-209ENST00000552896 FGD5Q6ZNL6 1462 aa20.55■□□□□ 0.88
TRAFD1-209ENST00000552896 WDR97A6NE52 1622 aa20.54■□□□□ 0.88
TRAFD1-209ENST00000552896 TOP2BQ02880 1626 aa20.54■□□□□ 0.88
TRAFD1-209ENST00000552896 SYNJ1O43426 1573 aa20.52■□□□□ 0.88
TRAFD1-209ENST00000552896 EIF4G3O43432 1585 aaKnown RBP20.52■□□□□ 0.88
TRAFD1-209ENST00000552896 WRNQ14191 1432 aaPredicted RBP eCLIP20.5■□□□□ 0.87
TRAFD1-209ENST00000552896 ZNF608Q9ULD9 1512 aaPredicted RBP20.46■□□□□ 0.87
TRAFD1-209ENST00000552896 RAD54L2Q9Y4B4 1467 aa20.43■□□□□ 0.86
TRAFD1-209ENST00000552896 SOGA1O94964 1423 aa20.42■□□□□ 0.86
TRAFD1-209ENST00000552896 ABCA10Q8WWZ4 1543 aa20.37■□□□□ 0.85
TRAFD1-209ENST00000552896 PBRM1Q86U86 1689 aa20.37■□□□□ 0.85
TRAFD1-209ENST00000552896 ABCA5Q8WWZ7 1642 aa20.37■□□□□ 0.85
TRAFD1-209ENST00000552896 AQRO60306 1485 aaKnown RBP eCLIP20.31■□□□□ 0.844e-6■■■■■ 31
TRAFD1-209ENST00000552896 CHD1O14646 1710 aa20.28■□□□□ 0.84
TRAFD1-209ENST00000552896 TDRD9Q8NDG6 1382 aaKnown RBP20.26■□□□□ 0.83
TRAFD1-209ENST00000552896 GAPVD1Q14C86 1478 aa20.24■□□□□ 0.83
TRAFD1-209ENST00000552896 GRIN2BQ13224 1484 aa20.24■□□□□ 0.83
TRAFD1-209ENST00000552896 MAGI1Q96QZ7 1491 aaPredicted RBP20.23■□□□□ 0.83
TRAFD1-209ENST00000552896 SNAPC4Q5SXM2 1469 aa20.21■□□□□ 0.83
TRAFD1-209ENST00000552896 ERICH3Q5RHP9 1530 aa20.16■□□□□ 0.82
TRAFD1-209ENST00000552896 ADAMTS12P58397 1594 aa20.16■□□□□ 0.82
TRAFD1-209ENST00000552896 DNAJC5Q9H3Z4 198 aa20.15■□□□□ 0.82
TRAFD1-209ENST00000552896 SYNJ2O15056 1496 aa20.11■□□□□ 0.81
TRAFD1-209ENST00000552896 CUL7Q14999 1698 aa20.07■□□□□ 0.8
TRAFD1-209ENST00000552896 KIF27Q86VH2 1401 aa20.06■□□□□ 0.8
TRAFD1-209ENST00000552896 OSCARQ8IYS5 282 aa20.04■□□□□ 0.8
TRAFD1-209ENST00000552896 FHAD1B1AJZ9 1412 aa20.02■□□□□ 0.79
TRAFD1-209ENST00000552896 CLASP1Q7Z460 1538 aa20.01■□□□□ 0.79
TRAFD1-209ENST00000552896 GRIN2AQ12879 1464 aa20■□□□□ 0.79
TRAFD1-209ENST00000552896 FBLN2P98095 1184 aa19.95■□□□□ 0.78
TRAFD1-209ENST00000552896 CHMP7Q8WUX9 453 aaPredicted RBP19.95■□□□□ 0.78
TRAFD1-209ENST00000552896 CEP170Q5SW79 1584 aa19.93■□□□□ 0.78
TRAFD1-209ENST00000552896 TRIM41Q8WV44 630 aa19.93■□□□□ 0.78
TRAFD1-209ENST00000552896 NUP160Q12769 1436 aa19.91■□□□□ 0.78
TRAFD1-209ENST00000552896 IGF1RP08069 1367 aa19.9■□□□□ 0.78
TRAFD1-209ENST00000552896 RIMBP3CA6NJZ7 1639 aa19.9■□□□□ 0.78
TRAFD1-209ENST00000552896 RIMBP3BA6NNM3 1639 aa19.9■□□□□ 0.78
TRAFD1-209ENST00000552896 RIMBP3Q9UFD9 1639 aa19.9■□□□□ 0.78
TRAFD1-209ENST00000552896 ARHGEF11O15085 1522 aa19.86■□□□□ 0.77
TRAFD1-209ENST00000552896 RUSC2Q8N2Y8 1516 aa19.86■□□□□ 0.77
TRAFD1-209ENST00000552896 SHROOM2Q13796 1616 aa19.84■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms