RNA–Protein interactions for RNA: ENST00000359875.9

HHLA3-201, Transcript of HERV-H LTR-associating 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene HHLA3, Length 898 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HHLA3-201ENST00000359875 AEBP2Q6ZN18 517 aaPredicted RBP22.32■■□□□ 1.16
HHLA3-201ENST00000359875 CHIC1Q5VXU3 224 aa21.51■■□□□ 1.03
HHLA3-201ENST00000359875 SENP3Q9H4L4 574 aaPredicted RBP19.21■□□□□ 0.67
HHLA3-201ENST00000359875 PHF23Q9BUL5 403 aaPredicted RBP18.9■□□□□ 0.62
HHLA3-201ENST00000359875 FOXD1Q16676 465 aa17.75■□□□□ 0.43
HHLA3-201ENST00000359875 PLPPR3Q6T4P5 718 aa17.34■□□□□ 0.37
HHLA3-201ENST00000359875 MSH5O43196 834 aa16.7■□□□□ 0.26
HHLA3-201ENST00000359875 NISCHQ9Y2I1 1504 aa16.7■□□□□ 0.26
HHLA3-201ENST00000359875 PIAS4Q8N2W9 510 aaPredicted RBP16.68■□□□□ 0.26
HHLA3-201ENST00000359875 PPP6R1Q9UPN7 881 aa16.67■□□□□ 0.26
HHLA3-201ENST00000359875 ADRA2BP18089 450 aa16.65■□□□□ 0.26
HHLA3-201ENST00000359875 POTEDQ86YR6 584 aa16.05■□□□□ 0.16
HHLA3-201ENST00000359875 SCAF1Q9H7N4 1312 aaKnown RBP15.49■□□□□ 0.07
HHLA3-201ENST00000359875 DMRT2Q9Y5R5 561 aa15.22■□□□□ 0.03
HHLA3-201ENST00000359875 MAPK8IP2Q13387 824 aaPredicted RBP15.2■□□□□ 0.02
HHLA3-201ENST00000359875 PPP4R3CPQ6ZMV5 832 aa15.16■□□□□ 0.02
HHLA3-201ENST00000359875 CCDC180Q9P1Z9 1646 aa15.02□□□□□ -0.01
HHLA3-201ENST00000359875 ABCC9O60706 1549 aa14.92□□□□□ -0.02
HHLA3-201ENST00000359875 CNKSR2Q8WXI2 1034 aa14.89□□□□□ -0.03
HHLA3-201ENST00000359875 NCBP3Q53F19 620 aaKnown RBP14.77□□□□□ -0.05
HHLA3-201ENST00000359875 HOXD11P31277 338 aaPredicted RBP14.74□□□□□ -0.05
HHLA3-201ENST00000359875 RNF216Q9NWF9 866 aaPredicted RBP14.72□□□□□ -0.05
HHLA3-201ENST00000359875 DCAF8L1A6NGE4 600 aa14.55□□□□□ -0.08
HHLA3-201ENST00000359875 NPM3O75607 178 aaKnown RBP14.39□□□□□ -0.11
HHLA3-201ENST00000359875 DNAJC5BQ9UF47 199 aa14.33□□□□□ -0.12
HHLA3-201ENST00000359875 RB1CC1Q8TDY2 1594 aa14.28□□□□□ -0.12
HHLA3-201ENST00000359875 KCNA4P22459 653 aa14.24□□□□□ -0.13
HHLA3-201ENST00000359875 NACADO15069 1562 aa14.21□□□□□ -0.14
HHLA3-201ENST00000359875 RNF39Q9H2S5 420 aa14.18□□□□□ -0.14
HHLA3-201ENST00000359875 CACNB1Q02641 598 aaPredicted RBP14.14□□□□□ -0.15
HHLA3-201ENST00000359875 C1QBPQ07021 282 aaKnown RBP14.07□□□□□ -0.16
HHLA3-201ENST00000359875 MYO15BQ96JP2 1530 aa14.06□□□□□ -0.16
HHLA3-201ENST00000359875 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.06□□□□□ -0.16
HHLA3-201ENST00000359875 DCAF8L2P0C7V8 631 aa13.99□□□□□ -0.17
HHLA3-201ENST00000359875 DCAF1Q9Y4B6 1507 aa13.86□□□□□ -0.19
HHLA3-201ENST00000359875 UNC13AQ9UPW8 1703 aa13.86□□□□□ -0.19
HHLA3-201ENST00000359875 PABPN1Q86U42 306 aaKnown RBP eCLIP13.85□□□□□ -0.19
HHLA3-201ENST00000359875 ZCCHC6Q5VYS8 1495 aaKnown RBP13.85□□□□□ -0.19
HHLA3-201ENST00000359875 BICRAQ9NZM4 1560 aa13.81□□□□□ -0.2
HHLA3-201ENST00000359875 SHROOM4Q9ULL8 1493 aa13.78□□□□□ -0.2
HHLA3-201ENST00000359875 U3KPZ7 1027 aaPredicted RBP13.71□□□□□ -0.21
HHLA3-201ENST00000359875 SLC4A2P04920 1241 aa13.65□□□□□ -0.22
HHLA3-201ENST00000359875 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.6□□□□□ -0.23
HHLA3-201ENST00000359875 APLP2Q06481 763 aa13.6□□□□□ -0.23
HHLA3-201ENST00000359875 HNRNPUL2Q1KMD3 747 aaKnown RBP13.6□□□□□ -0.23
HHLA3-201ENST00000359875 SCRIBQ14160 1630 aa13.58□□□□□ -0.24
HHLA3-201ENST00000359875 SLC4A1APQ9BWU0 796 aaKnown RBP13.56□□□□□ -0.24
HHLA3-201ENST00000359875 CC2D2AQ9P2K1 1620 aa13.5□□□□□ -0.25
HHLA3-201ENST00000359875 EIF4G1Q04637 1599 aaKnown RBP13.49□□□□□ -0.25
HHLA3-201ENST00000359875 CECR2Q9BXF3 1484 aa13.48□□□□□ -0.25
HHLA3-201ENST00000359875 CAPN15O75808 1086 aa13.47□□□□□ -0.25
HHLA3-201ENST00000359875 SAMD1Q6SPF0 538 aaPredicted RBP13.47□□□□□ -0.25
HHLA3-201ENST00000359875 MYCNP04198 464 aaPredicted RBP13.4□□□□□ -0.26
HHLA3-201ENST00000359875 SPINK5Q9NQ38 1064 aaPredicted RBP13.4□□□□□ -0.26
HHLA3-201ENST00000359875 ZNF219Q9P2Y4 722 aaPredicted RBP13.37□□□□□ -0.27
HHLA3-201ENST00000359875 FOXD4L1Q9NU39 408 aa13.33□□□□□ -0.28
HHLA3-201ENST00000359875 DSG3P32926 999 aa13.32□□□□□ -0.28
HHLA3-201ENST00000359875 TRHP20396 242 aaPredicted RBP13.27□□□□□ -0.29
HHLA3-201ENST00000359875 NCAPD3P42695 1498 aa13.1□□□□□ -0.31
HHLA3-201ENST00000359875 ABCB7O75027 752 aa13.08□□□□□ -0.32
HHLA3-201ENST00000359875 SMARCA2P51531 1590 aa13.03□□□□□ -0.32
HHLA3-201ENST00000359875 ZBTB22O15209 634 aa13.03□□□□□ -0.32
HHLA3-201ENST00000359875 ATAD2BQ9ULI0 1458 aa13.03□□□□□ -0.32
HHLA3-201ENST00000359875 HMGXB3Q12766 1538 aa13.02□□□□□ -0.33
HHLA3-201ENST00000359875 SMARCA4P51532 1647 aa13.01□□□□□ -0.33
HHLA3-201ENST00000359875 BAZ1AQ9NRL2 1556 aaPredicted RBP12.99□□□□□ -0.33
HHLA3-201ENST00000359875 ATXN8OSP0DMR3 200 aa12.99□□□□□ -0.33
HHLA3-201ENST00000359875 POLA2Q14181 598 aa12.97□□□□□ -0.33
HHLA3-201ENST00000359875 CUX2O14529 1486 aa12.95□□□□□ -0.34
HHLA3-201ENST00000359875 PEG3Q9GZU2 1588 aa12.94□□□□□ -0.34
HHLA3-201ENST00000359875 ERCC6Q03468 1493 aa12.92□□□□□ -0.34
HHLA3-201ENST00000359875 BAZ1BQ9UIG0 1483 aaKnown RBP12.91□□□□□ -0.34
HHLA3-201ENST00000359875 DNAJC5Q9H3Z4 198 aa12.89□□□□□ -0.35
HHLA3-201ENST00000359875 ZBTB12Q9Y330 459 aaPredicted RBP12.89□□□□□ -0.35
HHLA3-201ENST00000359875 ATF5Q9Y2D1 282 aaPredicted RBP12.88□□□□□ -0.35
HHLA3-201ENST00000359875 RBM42Q9BTD8 480 aaKnown RBP12.86□□□□□ -0.35
HHLA3-201ENST00000359875 MROH2BQ7Z745 1585 aa12.81□□□□□ -0.36
HHLA3-201ENST00000359875 LAMC3Q9Y6N6 1575 aa12.81□□□□□ -0.36
HHLA3-201ENST00000359875 NESP48681 1621 aa12.8□□□□□ -0.36
HHLA3-201ENST00000359875 PDS5BQ9NTI5 1447 aa12.74□□□□□ -0.37
HHLA3-201ENST00000359875 THOC2Q8NI27 1593 aaKnown RBP12.72□□□□□ -0.37
HHLA3-201ENST00000359875 CADPSQ9ULU8 1353 aa12.69□□□□□ -0.38
HHLA3-201ENST00000359875 CSRNP3Q8WYN3 585 aa12.66□□□□□ -0.38
HHLA3-201ENST00000359875 WIZO95785 1651 aa12.64□□□□□ -0.39
HHLA3-201ENST00000359875 KIF21AQ7Z4S6 1674 aa12.64□□□□□ -0.39
HHLA3-201ENST00000359875 MRC2Q9UBG0 1479 aa12.6□□□□□ -0.39
HHLA3-201ENST00000359875 FBLN2P98095 1184 aa12.6□□□□□ -0.39
HHLA3-201ENST00000359875 WDR62O43379 1518 aa12.58□□□□□ -0.4
HHLA3-201ENST00000359875 EHMT2Q96KQ7 1210 aa12.58□□□□□ -0.4
HHLA3-201ENST00000359875 RSF1Q96T23 1441 aaPredicted RBP12.58□□□□□ -0.4
HHLA3-201ENST00000359875 TOP2AP11388 1531 aaKnown RBP12.56□□□□□ -0.4
HHLA3-201ENST00000359875 CFTRP13569 1480 aa12.55□□□□□ -0.4
HHLA3-201ENST00000359875 CEP164Q9UPV0 1460 aa12.55□□□□□ -0.4
HHLA3-201ENST00000359875 AKT1S1Q96B36 256 aa12.54□□□□□ -0.4
HHLA3-201ENST00000359875 FANCD2Q9BXW9 1451 aa12.53□□□□□ -0.4
HHLA3-201ENST00000359875 OSCARQ8IYS5 282 aa12.51□□□□□ -0.41
HHLA3-201ENST00000359875 POTEHQ6S545 545 aa12.48□□□□□ -0.41
HHLA3-201ENST00000359875 SPDYE2BA6NHP3 402 aa12.43□□□□□ -0.42
HHLA3-201ENST00000359875 SPDYE6P0CI01 402 aa12.43□□□□□ -0.42
HHLA3-201ENST00000359875 SPDYE2Q495Y8 402 aa12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms