RNA–Protein interactions for RNA: ENST00000547063.5

TRAFD1-203, Transcript of TRAF-type zinc finger domain containing 1, humanhuman

TSL 3

Gene TRAFD1, Length 867 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAFD1-203ENST00000547063 NISCHQ9Y2I1 1504 aa36.98■■■■□ 3.51
TRAFD1-203ENST00000547063 CCDC180Q9P1Z9 1646 aa32.61■■■□□ 2.81
TRAFD1-203ENST00000547063 ABCC9O60706 1549 aa31.14■■■□□ 2.57
TRAFD1-203ENST00000547063 ZCCHC6Q5VYS8 1495 aaKnown RBP30.95■■■□□ 2.55
TRAFD1-203ENST00000547063 DCAF1Q9Y4B6 1507 aa30.68■■■□□ 2.5
TRAFD1-203ENST00000547063 DCAF8L2P0C7V8 631 aa30.6■■■□□ 2.49
TRAFD1-203ENST00000547063 MYO15BQ96JP2 1530 aa30.56■■■□□ 2.48
TRAFD1-203ENST00000547063 NACADO15069 1562 aa30.49■■■□□ 2.47
TRAFD1-203ENST00000547063 RB1CC1Q8TDY2 1594 aa30.35■■■□□ 2.45
TRAFD1-203ENST00000547063 SCRIBQ14160 1630 aa29.74■■■□□ 2.35
TRAFD1-203ENST00000547063 SHROOM4Q9ULL8 1493 aa29.6■■■□□ 2.33
TRAFD1-203ENST00000547063 UNC13AQ9UPW8 1703 aa29.59■■■□□ 2.33
TRAFD1-203ENST00000547063 BICRAQ9NZM4 1560 aa29.31■■■□□ 2.28
TRAFD1-203ENST00000547063 PABPN1Q86U42 306 aaKnown RBP eCLIP29.19■■■□□ 2.26
TRAFD1-203ENST00000547063 CECR2Q9BXF3 1484 aa28.66■■■□□ 2.18
TRAFD1-203ENST00000547063 BAZ1AQ9NRL2 1556 aaPredicted RBP28.66■■■□□ 2.18
TRAFD1-203ENST00000547063 SMARCA4P51532 1647 aa28.54■■■□□ 2.16
TRAFD1-203ENST00000547063 EIF4G1Q04637 1599 aaKnown RBP28.52■■■□□ 2.16
TRAFD1-203ENST00000547063 MROH2BQ7Z745 1585 aa28.48■■■□□ 2.15
TRAFD1-203ENST00000547063 RSF1Q96T23 1441 aaPredicted RBP28.43■■■□□ 2.14
TRAFD1-203ENST00000547063 PEG3Q9GZU2 1588 aa28.27■■■□□ 2.12
TRAFD1-203ENST00000547063 SMARCA2P51531 1590 aa28.26■■■□□ 2.11
TRAFD1-203ENST00000547063 SUPT5HO00267 1087 aaKnown RBP28.26■■■□□ 2.11
TRAFD1-203ENST00000547063 CC2D2AQ9P2K1 1620 aa28.21■■■□□ 2.11
TRAFD1-203ENST00000547063 WIZO95785 1651 aa28.21■■■□□ 2.11
TRAFD1-203ENST00000547063 ATAD2BQ9ULI0 1458 aa28.2■■■□□ 2.1
TRAFD1-203ENST00000547063 NCAPD3P42695 1498 aa28.09■■■□□ 2.09
TRAFD1-203ENST00000547063 HMGXB3Q12766 1538 aa28.04■■■□□ 2.08
TRAFD1-203ENST00000547063 BAZ1BQ9UIG0 1483 aaKnown RBP28.04■■■□□ 2.08
TRAFD1-203ENST00000547063 TOP2AP11388 1531 aaKnown RBP28■■■□□ 2.07
TRAFD1-203ENST00000547063 DNAJC5BQ9UF47 199 aa27.83■■■□□ 2.05
TRAFD1-203ENST00000547063 CCDC88BA6NC98 1476 aa27.64■■■□□ 2.01
TRAFD1-203ENST00000547063 CADPSQ9ULU8 1353 aa27.32■■□□□ 1.96
TRAFD1-203ENST00000547063 CFTRP13569 1480 aa27.3■■□□□ 1.96
TRAFD1-203ENST00000547063 LAMC3Q9Y6N6 1575 aa27.26■■□□□ 1.96
TRAFD1-203ENST00000547063 PRDM2Q13029 1718 aa27.19■■□□□ 1.94
TRAFD1-203ENST00000547063 NESP48681 1621 aa27.12■■□□□ 1.93
TRAFD1-203ENST00000547063 PDS5BQ9NTI5 1447 aa27.07■■□□□ 1.92
TRAFD1-203ENST00000547063 FANCD2Q9BXW9 1451 aa27■■□□□ 1.91
TRAFD1-203ENST00000547063 CEP164Q9UPV0 1460 aa26.91■■□□□ 1.9
TRAFD1-203ENST00000547063 KIF21AQ7Z4S6 1674 aa26.86■■□□□ 1.89
TRAFD1-203ENST00000547063 ERCC6Q03468 1493 aa26.84■■□□□ 1.89
TRAFD1-203ENST00000547063 WRNQ14191 1432 aaPredicted RBP eCLIP26.82■■□□□ 1.88
TRAFD1-203ENST00000547063 ABCC8Q09428 1581 aa26.82■■□□□ 1.88
TRAFD1-203ENST00000547063 CHIC1Q5VXU3 224 aa26.8■■□□□ 1.88
TRAFD1-203ENST00000547063 MRC2Q9UBG0 1479 aa26.71■■□□□ 1.87
TRAFD1-203ENST00000547063 TRIM41Q8WV44 630 aa26.71■■□□□ 1.87
TRAFD1-203ENST00000547063 DNMBPQ6XZF7 1577 aa26.7■■□□□ 1.86
TRAFD1-203ENST00000547063 TOP2BQ02880 1626 aa26.68■■□□□ 1.86
TRAFD1-203ENST00000547063 CUX1P39880 1505 aa26.68■■□□□ 1.86
TRAFD1-203ENST00000547063 BIVM-ERCC5R4GMW8 1640 aa26.68■■□□□ 1.86
TRAFD1-203ENST00000547063 SYNJ1O43426 1573 aa26.67■■□□□ 1.86
TRAFD1-203ENST00000547063 URB2Q14146 1524 aaKnown RBP26.65■■□□□ 1.86
TRAFD1-203ENST00000547063 TOPBP1Q92547 1522 aa26.64■■□□□ 1.85
TRAFD1-203ENST00000547063 THOC2Q8NI27 1593 aaKnown RBP26.59■■□□□ 1.85
TRAFD1-203ENST00000547063 WDR62O43379 1518 aa26.59■■□□□ 1.85
TRAFD1-203ENST00000547063 FGD5Q6ZNL6 1462 aa26.49■■□□□ 1.83
TRAFD1-203ENST00000547063 POLA1P09884 1462 aaPredicted RBP26.45■■□□□ 1.82
TRAFD1-203ENST00000547063 SOGA1O94964 1423 aa26.38■■□□□ 1.81
TRAFD1-203ENST00000547063 CUX2O14529 1486 aa26.32■■□□□ 1.8
TRAFD1-203ENST00000547063 IFT140Q96RY7 1462 aa26.32■■□□□ 1.8
TRAFD1-203ENST00000547063 ABCA10Q8WWZ4 1543 aa26.3■■□□□ 1.8
TRAFD1-203ENST00000547063 RAD54L2Q9Y4B4 1467 aa26.3■■□□□ 1.8
TRAFD1-203ENST00000547063 TARBP1Q13395 1621 aaKnown RBP26.28■■□□□ 1.8
TRAFD1-203ENST00000547063 EEA1Q15075 1411 aa26.26■■□□□ 1.79
TRAFD1-203ENST00000547063 WDR97A6NE52 1622 aa26.25■■□□□ 1.79
TRAFD1-203ENST00000547063 KIF27Q86VH2 1401 aa26.23■■□□□ 1.79
TRAFD1-203ENST00000547063 TDRD9Q8NDG6 1382 aaKnown RBP26.11■■□□□ 1.77
TRAFD1-203ENST00000547063 ABCA5Q8WWZ7 1642 aa26.11■■□□□ 1.77
TRAFD1-203ENST00000547063 RUSC2Q8N2Y8 1516 aa26.09■■□□□ 1.77
TRAFD1-203ENST00000547063 GAPVD1Q14C86 1478 aa26.09■■□□□ 1.77
TRAFD1-203ENST00000547063 FAM9AQ8IZU1 332 aaPredicted RBP26.07■■□□□ 1.76
TRAFD1-203ENST00000547063 ZNF608Q9ULD9 1512 aaPredicted RBP26.06■■□□□ 1.76
TRAFD1-203ENST00000547063 CSRNP3Q8WYN3 585 aa26.05■■□□□ 1.76
TRAFD1-203ENST00000547063 EIF4G3O43432 1585 aaKnown RBP26.03■■□□□ 1.76
TRAFD1-203ENST00000547063 AQRO60306 1485 aaKnown RBP eCLIP26.03■■□□□ 1.764e-6■■■■■ 31
TRAFD1-203ENST00000547063 ERICH3Q5RHP9 1530 aa26.02■■□□□ 1.76
TRAFD1-203ENST00000547063 GRIN2BQ13224 1484 aa26■■□□□ 1.75
TRAFD1-203ENST00000547063 IGF1RP08069 1367 aa25.98■■□□□ 1.75
TRAFD1-203ENST00000547063 PBRM1Q86U86 1689 aa25.98■■□□□ 1.75
TRAFD1-203ENST00000547063 CUL7Q14999 1698 aa25.94■■□□□ 1.74
TRAFD1-203ENST00000547063 KIF21BO75037 1637 aa25.88■■□□□ 1.73
TRAFD1-203ENST00000547063 MAGI1Q96QZ7 1491 aaPredicted RBP25.87■■□□□ 1.73
TRAFD1-203ENST00000547063 PRXQ9BXM0 1461 aa25.87■■□□□ 1.73
TRAFD1-203ENST00000547063 CARMIL1Q5VZK9 1371 aa25.87■■□□□ 1.73
TRAFD1-203ENST00000547063 FHAD1B1AJZ9 1412 aa25.83■■□□□ 1.73
TRAFD1-203ENST00000547063 SNAPC4Q5SXM2 1469 aa25.82■■□□□ 1.72
TRAFD1-203ENST00000547063 RAPGEF2Q9Y4G8 1499 aa25.81■■□□□ 1.72
TRAFD1-203ENST00000547063 ADAMTS12P58397 1594 aa25.81■■□□□ 1.72
TRAFD1-203ENST00000547063 GOLGA3Q08378 1498 aa25.79■■□□□ 1.72
TRAFD1-203ENST00000547063 SYNJ2O15056 1496 aa25.74■■□□□ 1.71
TRAFD1-203ENST00000547063 CHMP7Q8WUX9 453 aaPredicted RBP25.68■■□□□ 1.7
TRAFD1-203ENST00000547063 LOC105371045A0A1W2PR82 267 aa25.66■■□□□ 1.7
TRAFD1-203ENST00000547063 UBTFP17480 764 aaKnown RBP25.65■■□□□ 1.7
TRAFD1-203ENST00000547063 GRIN2AQ12879 1464 aa25.65■■□□□ 1.7
TRAFD1-203ENST00000547063 EHMT2Q96KQ7 1210 aa25.63■■□□□ 1.69
TRAFD1-203ENST00000547063 FBLN2P98095 1184 aa25.62■■□□□ 1.69
TRAFD1-203ENST00000547063 TNIKQ9UKE5 1360 aa25.59■■□□□ 1.69
TRAFD1-203ENST00000547063 CHD1O14646 1710 aa25.57■■□□□ 1.68
TRAFD1-203ENST00000547063 CTTNBP2Q8WZ74 1663 aa25.54■■□□□ 1.68
Retrieved 100 of 20,778 RNA–protein pairs in 127 ms