RNA–Protein interactions for RNA: ENST00000548092.5

TRAFD1-204, Transcript of TRAF-type zinc finger domain containing 1, humanhuman

TSL 3

Gene TRAFD1, Length 584 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAFD1-204ENST00000548092 AEBP2Q6ZN18 517 aaPredicted RBP22.15■■□□□ 1.14
TRAFD1-204ENST00000548092 CHIC1Q5VXU3 224 aa21.2■□□□□ 0.98
TRAFD1-204ENST00000548092 SENP3Q9H4L4 574 aaPredicted RBP18.71■□□□□ 0.59
TRAFD1-204ENST00000548092 PHF23Q9BUL5 403 aaPredicted RBP18.69■□□□□ 0.58
TRAFD1-204ENST00000548092 FOXD1Q16676 465 aa17.52■□□□□ 0.4
TRAFD1-204ENST00000548092 PLPPR3Q6T4P5 718 aa17.01■□□□□ 0.31
TRAFD1-204ENST00000548092 PPP6R1Q9UPN7 881 aa16.63■□□□□ 0.25
TRAFD1-204ENST00000548092 ADRA2BP18089 450 aa16.57■□□□□ 0.24
TRAFD1-204ENST00000548092 PIAS4Q8N2W9 510 aaPredicted RBP16.37■□□□□ 0.21
TRAFD1-204ENST00000548092 MSH5O43196 834 aa16.17■□□□□ 0.18
TRAFD1-204ENST00000548092 POTEDQ86YR6 584 aa15.45■□□□□ 0.06
TRAFD1-204ENST00000548092 MAPK8IP2Q13387 824 aaPredicted RBP15.17■□□□□ 0.02
TRAFD1-204ENST00000548092 SCAF1Q9H7N4 1312 aaKnown RBP15.01□□□□□ -0.01
TRAFD1-204ENST00000548092 PPP4R3CPQ6ZMV5 832 aa15□□□□□ -0.01
TRAFD1-204ENST00000548092 DMRT2Q9Y5R5 561 aa14.91□□□□□ -0.02
TRAFD1-204ENST00000548092 CNKSR2Q8WXI2 1034 aa14.62□□□□□ -0.07
TRAFD1-204ENST00000548092 HOXD11P31277 338 aaPredicted RBP14.48□□□□□ -0.09
TRAFD1-204ENST00000548092 RNF216Q9NWF9 866 aaPredicted RBP14.41□□□□□ -0.1
TRAFD1-204ENST00000548092 NCBP3Q53F19 620 aaKnown RBP14.4□□□□□ -0.1
TRAFD1-204ENST00000548092 NPM3O75607 178 aaKnown RBP14.3□□□□□ -0.12
TRAFD1-204ENST00000548092 DCAF8L1A6NGE4 600 aa14.28□□□□□ -0.12
TRAFD1-204ENST00000548092 KCNA4P22459 653 aa14.28□□□□□ -0.12
TRAFD1-204ENST00000548092 RNF39Q9H2S5 420 aa13.89□□□□□ -0.19
TRAFD1-204ENST00000548092 DNAJC5BQ9UF47 199 aa13.87□□□□□ -0.19
TRAFD1-204ENST00000548092 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.77□□□□□ -0.215e-6■■■□□ 14.8
TRAFD1-204ENST00000548092 CACNB1Q02641 598 aaPredicted RBP13.76□□□□□ -0.21
TRAFD1-204ENST00000548092 C1QBPQ07021 282 aaKnown RBP13.65□□□□□ -0.22
TRAFD1-204ENST00000548092 SLC4A2P04920 1241 aa13.63□□□□□ -0.23
TRAFD1-204ENST00000548092 U3KPZ7 1027 aaPredicted RBP13.55□□□□□ -0.24
TRAFD1-204ENST00000548092 SLC4A1APQ9BWU0 796 aaKnown RBP13.47□□□□□ -0.25
TRAFD1-204ENST00000548092 SPINK5Q9NQ38 1064 aaPredicted RBP13.31□□□□□ -0.28
TRAFD1-204ENST00000548092 CAPN15O75808 1086 aa13.21□□□□□ -0.29
TRAFD1-204ENST00000548092 ZBTB22O15209 634 aa13.17□□□□□ -0.3
TRAFD1-204ENST00000548092 FOXD4L1Q9NU39 408 aa13.17□□□□□ -0.3
TRAFD1-204ENST00000548092 MYCNP04198 464 aaPredicted RBP13.15□□□□□ -0.3
TRAFD1-204ENST00000548092 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.13□□□□□ -0.31
TRAFD1-204ENST00000548092 HNRNPUL2Q1KMD3 747 aaKnown RBP13.13□□□□□ -0.31
TRAFD1-204ENST00000548092 DSG3P32926 999 aa13.11□□□□□ -0.31
TRAFD1-204ENST00000548092 SAMD1Q6SPF0 538 aaPredicted RBP13.1□□□□□ -0.31
TRAFD1-204ENST00000548092 TRHP20396 242 aaPredicted RBP13.08□□□□□ -0.32
TRAFD1-204ENST00000548092 APLP2Q06481 763 aa13.04□□□□□ -0.32
TRAFD1-204ENST00000548092 ZNF219Q9P2Y4 722 aaPredicted RBP12.99□□□□□ -0.33
TRAFD1-204ENST00000548092 ABCB7O75027 752 aa12.98□□□□□ -0.33
TRAFD1-204ENST00000548092 ATF5Q9Y2D1 282 aaPredicted RBP12.97□□□□□ -0.33
TRAFD1-204ENST00000548092 POLA2Q14181 598 aa12.8□□□□□ -0.36
TRAFD1-204ENST00000548092 CSRNP3Q8WYN3 585 aa12.78□□□□□ -0.36
TRAFD1-204ENST00000548092 ATXN8OSP0DMR3 200 aa12.71□□□□□ -0.37
TRAFD1-204ENST00000548092 EHMT2Q96KQ7 1210 aa12.71□□□□□ -0.37
TRAFD1-204ENST00000548092 ZBTB12Q9Y330 459 aaPredicted RBP12.43□□□□□ -0.42
TRAFD1-204ENST00000548092 RBM42Q9BTD8 480 aaKnown RBP12.39□□□□□ -0.43
TRAFD1-204ENST00000548092 OSCARQ8IYS5 282 aa12.36□□□□□ -0.43
TRAFD1-204ENST00000548092 MKRN4PQ13434 485 aaPredicted RBP12.35□□□□□ -0.43
TRAFD1-204ENST00000548092 FBLN2P98095 1184 aa12.28□□□□□ -0.44
TRAFD1-204ENST00000548092 AKT1S1Q96B36 256 aa12.21□□□□□ -0.45
TRAFD1-204ENST00000548092 REM2Q8IYK8 340 aaPredicted RBP12.14□□□□□ -0.47
TRAFD1-204ENST00000548092 SPDYE2BA6NHP3 402 aa12.13□□□□□ -0.47
TRAFD1-204ENST00000548092 SPDYE6P0CI01 402 aa12.13□□□□□ -0.47
TRAFD1-204ENST00000548092 SPDYE2Q495Y8 402 aa12.13□□□□□ -0.47
TRAFD1-204ENST00000548092 POTEHQ6S545 545 aa12.13□□□□□ -0.47
TRAFD1-204ENST00000548092 CHRDL2Q6WN34 429 aa12.09□□□□□ -0.47
TRAFD1-204ENST00000548092 ZNF692Q9BU19 519 aaPredicted RBP12.06□□□□□ -0.48
TRAFD1-204ENST00000548092 SSUH2Q9Y2M2 353 aa12.04□□□□□ -0.48
TRAFD1-204ENST00000548092 PITPNM1O00562 1244 aa12.01□□□□□ -0.49
TRAFD1-204ENST00000548092 PABPN1Q86U42 306 aaKnown RBP eCLIP11.9□□□□□ -0.5
TRAFD1-204ENST00000548092 PIP4P2Q8N4L2 257 aa11.89□□□□□ -0.51
TRAFD1-204ENST00000548092 CLEC11AQ9Y240 323 aa11.87□□□□□ -0.51
TRAFD1-204ENST00000548092 FXR2P51116 673 aaKnown RBP eCLIP11.86□□□□□ -0.51
TRAFD1-204ENST00000548092 SPDYE1Q8NFV5 336 aaPredicted RBP11.85□□□□□ -0.51
TRAFD1-204ENST00000548092 SPDYE4A6NLX3 237 aa11.83□□□□□ -0.52
TRAFD1-204ENST00000548092 PRR29P0C7W0 189 aa11.69□□□□□ -0.54
TRAFD1-204ENST00000548092 PRKAR2AP13861 404 aaKnown RBP11.69□□□□□ -0.54
TRAFD1-204ENST00000548092 CHADLQ6NUI6 762 aa11.67□□□□□ -0.54
TRAFD1-204ENST00000548092 PROM2Q8N271 834 aa11.6□□□□□ -0.55
TRAFD1-204ENST00000548092 HAX1O00165 279 aa11.59□□□□□ -0.55
TRAFD1-204ENST00000548092 EVX2Q03828 476 aa11.57□□□□□ -0.56
TRAFD1-204ENST00000548092 STAG3Q9UJ98 1225 aa11.56□□□□□ -0.56
TRAFD1-204ENST00000548092 FKBP8Q14318 412 aa11.52□□□□□ -0.57
TRAFD1-204ENST00000548092 CREBZFQ9NS37 354 aa11.51□□□□□ -0.57
TRAFD1-204ENST00000548092 SP7Q8TDD2 431 aaPredicted RBP11.48□□□□□ -0.57
TRAFD1-204ENST00000548092 FARP1Q9Y4F1 1045 aaPredicted RBP11.47□□□□□ -0.57
TRAFD1-204ENST00000548092 C19orf67A6NJJ6 358 aa11.46□□□□□ -0.57
TRAFD1-204ENST00000548092 MNX1P50219 401 aaPredicted RBP11.37□□□□□ -0.59
TRAFD1-204ENST00000548092 CD44P16070 742 aaKnown RBP11.32□□□□□ -0.6
TRAFD1-204ENST00000548092 MIER1Q8N108 512 aa11.27□□□□□ -0.61
TRAFD1-204ENST00000548092 GABBR2O75899 941 aa11.25□□□□□ -0.61
TRAFD1-204ENST00000548092 ZRANB1Q9UGI0 708 aa11.22□□□□□ -0.61
TRAFD1-204ENST00000548092 NPM1P06748 294 aaKnown RBP eCLIP11.21□□□□□ -0.61
TRAFD1-204ENST00000548092 PLCD3Q8N3E9 789 aa11.17□□□□□ -0.62
TRAFD1-204ENST00000548092 ZNF579Q8NAF0 562 aaKnown RBP11.15□□□□□ -0.62
TRAFD1-204ENST00000548092 PLEKHG5O94827 1062 aa11.12□□□□□ -0.63
TRAFD1-204ENST00000548092 FBXO3Q9UK99 471 aa11.12□□□□□ -0.63
TRAFD1-204ENST00000548092 PHF12Q96QT6 1004 aa11.11□□□□□ -0.63
TRAFD1-204ENST00000548092 TSPYL2Q9H2G4 693 aaPredicted RBP11.1□□□□□ -0.63
TRAFD1-204ENST00000548092 PAK3O75914 559 aaPredicted RBP11.09□□□□□ -0.63
TRAFD1-204ENST00000548092 RASEFQ8IZ41 740 aa11.08□□□□□ -0.64
TRAFD1-204ENST00000548092 POTEIP0CG38 1075 aa11.06□□□□□ -0.64
TRAFD1-204ENST00000548092 GALR2O43603 387 aaPredicted RBP11.05□□□□□ -0.64
TRAFD1-204ENST00000548092 VASPP50552 380 aaPredicted RBP11.04□□□□□ -0.64
TRAFD1-204ENST00000548092 NUBP1P53384 320 aa11.04□□□□□ -0.64
TRAFD1-204ENST00000548092 CLCN6P51797 869 aa11.03□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 127.2 ms