RNA–Protein interactions for RNA: ENST00000257604.9

TRAFD1-201, Transcript of TRAF-type zinc finger domain containing 1, humanhuman

APPRIS P2 TSL 2 BASIC

Gene TRAFD1, Length 3,178 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAFD1-201ENST00000257604 NISCHQ9Y2I1 1504 aa30.62■■■□□ 2.49
TRAFD1-201ENST00000257604 DCAF8L2P0C7V8 631 aa26.77■■□□□ 1.88
TRAFD1-201ENST00000257604 SHROOM4Q9ULL8 1493 aa26.71■■□□□ 1.87
TRAFD1-201ENST00000257604 SUPT5HO00267 1087 aaKnown RBP26.05■■□□□ 1.76
TRAFD1-201ENST00000257604 CCDC180Q9P1Z9 1646 aa25.83■■□□□ 1.73
TRAFD1-201ENST00000257604 ZCCHC6Q5VYS8 1495 aaKnown RBP25.7■■□□□ 1.7
TRAFD1-201ENST00000257604 ABCC9O60706 1549 aa25.24■■□□□ 1.63
TRAFD1-201ENST00000257604 SCRIBQ14160 1630 aa24.8■■□□□ 1.56
TRAFD1-201ENST00000257604 DCAF1Q9Y4B6 1507 aa24.7■■□□□ 1.55
TRAFD1-201ENST00000257604 CHIC1Q5VXU3 224 aa24.63■■□□□ 1.53
TRAFD1-201ENST00000257604 EHMT2Q96KQ7 1210 aa24.39■■□□□ 1.49
TRAFD1-201ENST00000257604 PABPN1Q86U42 306 aaKnown RBP eCLIP24.34■■□□□ 1.49
TRAFD1-201ENST00000257604 MYO15BQ96JP2 1530 aa24.27■■□□□ 1.48
TRAFD1-201ENST00000257604 FAM9AQ8IZU1 332 aaPredicted RBP24.24■■□□□ 1.47
TRAFD1-201ENST00000257604 LOC105371045A0A1W2PR82 267 aa24.24■■□□□ 1.47
TRAFD1-201ENST00000257604 NACADO15069 1562 aa24.22■■□□□ 1.47
TRAFD1-201ENST00000257604 RSF1Q96T23 1441 aaPredicted RBP24.21■■□□□ 1.47
TRAFD1-201ENST00000257604 CECR2Q9BXF3 1484 aa24.21■■□□□ 1.47
TRAFD1-201ENST00000257604 TRIM41Q8WV44 630 aa24.05■■□□□ 1.44
TRAFD1-201ENST00000257604 RB1CC1Q8TDY2 1594 aa24.04■■□□□ 1.44
TRAFD1-201ENST00000257604 MROH2BQ7Z745 1585 aa23.94■■□□□ 1.42
TRAFD1-201ENST00000257604 PCGF6Q9BYE7 350 aa23.79■■□□□ 1.4
TRAFD1-201ENST00000257604 WIZO95785 1651 aa23.77■■□□□ 1.4
TRAFD1-201ENST00000257604 PPARGC1BQ86YN6 1023 aaKnown RBP23.7■■□□□ 1.38
TRAFD1-201ENST00000257604 HRCP23327 699 aa23.64■■□□□ 1.38
TRAFD1-201ENST00000257604 BAZ1AQ9NRL2 1556 aaPredicted RBP23.53■■□□□ 1.36
TRAFD1-201ENST00000257604 UNC13AQ9UPW8 1703 aa23.5■■□□□ 1.35
TRAFD1-201ENST00000257604 TTBK1Q5TCY1 1321 aaPredicted RBP23.4■■□□□ 1.34
TRAFD1-201ENST00000257604 SMARCA4P51532 1647 aa23.36■■□□□ 1.33
TRAFD1-201ENST00000257604 BICRAQ9NZM4 1560 aa23.34■■□□□ 1.33
TRAFD1-201ENST00000257604 CCDC88BA6NC98 1476 aa23.33■■□□□ 1.32
TRAFD1-201ENST00000257604 ABCC8Q09428 1581 aa23.27■■□□□ 1.32
TRAFD1-201ENST00000257604 RANGAP1P46060 587 aaPredicted RBP23.25■■□□□ 1.31
TRAFD1-201ENST00000257604 TOP2AP11388 1531 aaKnown RBP23.19■■□□□ 1.3
TRAFD1-201ENST00000257604 UBTFP17480 764 aaKnown RBP23.14■■□□□ 1.3
TRAFD1-201ENST00000257604 SMARCA2P51531 1590 aa23.1■■□□□ 1.29
TRAFD1-201ENST00000257604 TRIM26Q12899 539 aaPredicted RBP23.06■■□□□ 1.28
TRAFD1-201ENST00000257604 BAZ1BQ9UIG0 1483 aaKnown RBP23.05■■□□□ 1.28
TRAFD1-201ENST00000257604 ATAD2BQ9ULI0 1458 aa23.02■■□□□ 1.28
TRAFD1-201ENST00000257604 SOGA1O94964 1423 aa23.02■■□□□ 1.28
TRAFD1-201ENST00000257604 RUSC2Q8N2Y8 1516 aa22.92■■□□□ 1.26
TRAFD1-201ENST00000257604 CSRNP3Q8WYN3 585 aa22.91■■□□□ 1.26
TRAFD1-201ENST00000257604 WRNQ14191 1432 aaPredicted RBP eCLIP22.86■■□□□ 1.25
TRAFD1-201ENST00000257604 EIF4G1Q04637 1599 aaKnown RBP22.78■■□□□ 1.24
TRAFD1-201ENST00000257604 PEG3Q9GZU2 1588 aa22.63■■□□□ 1.21
TRAFD1-201ENST00000257604 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.61■■□□□ 1.21
TRAFD1-201ENST00000257604 CEP162Q5TB80 1403 aa22.61■■□□□ 1.21
TRAFD1-201ENST00000257604 SYNJ1O43426 1573 aa22.6■■□□□ 1.21
TRAFD1-201ENST00000257604 NCAPD3P42695 1498 aa22.52■■□□□ 1.2
TRAFD1-201ENST00000257604 DNAJC5BQ9UF47 199 aa22.52■■□□□ 1.2
TRAFD1-201ENST00000257604 CCER1Q8TC90 406 aaPredicted RBP22.48■■□□□ 1.19
TRAFD1-201ENST00000257604 APLP2Q06481 763 aa22.48■■□□□ 1.19
TRAFD1-201ENST00000257604 TNIKQ9UKE5 1360 aa22.45■■□□□ 1.18
TRAFD1-201ENST00000257604 HNRNPUL2Q1KMD3 747 aaKnown RBP22.43■■□□□ 1.18
TRAFD1-201ENST00000257604 GOLGA3Q08378 1498 aa22.43■■□□□ 1.18
TRAFD1-201ENST00000257604 EEA1Q15075 1411 aa22.4■■□□□ 1.18
TRAFD1-201ENST00000257604 RAPGEF2Q9Y4G8 1499 aa22.39■■□□□ 1.17
TRAFD1-201ENST00000257604 ATP1B4Q9UN42 357 aaPredicted RBP22.36■■□□□ 1.17
TRAFD1-201ENST00000257604 CC2D2AQ9P2K1 1620 aa22.36■■□□□ 1.17
TRAFD1-201ENST00000257604 CLIP1P30622 1438 aa22.33■■□□□ 1.17
TRAFD1-201ENST00000257604 SCAF1Q9H7N4 1312 aaKnown RBP22.33■■□□□ 1.16
TRAFD1-201ENST00000257604 HMGXB3Q12766 1538 aa22.32■■□□□ 1.16
TRAFD1-201ENST00000257604 CEP164Q9UPV0 1460 aa22.32■■□□□ 1.16
TRAFD1-201ENST00000257604 P3H3Q8IVL6 736 aa22.31■■□□□ 1.16
TRAFD1-201ENST00000257604 CADPSQ9ULU8 1353 aa22.29■■□□□ 1.16
TRAFD1-201ENST00000257604 ZEB1P37275 1124 aaPredicted RBP22.26■■□□□ 1.15
TRAFD1-201ENST00000257604 CFTRP13569 1480 aa22.26■■□□□ 1.15
TRAFD1-201ENST00000257604 CUX1P39880 1505 aa22.26■■□□□ 1.15
TRAFD1-201ENST00000257604 NESP48681 1621 aa22.26■■□□□ 1.15
TRAFD1-201ENST00000257604 ITGAEP38570 1179 aa22.2■■□□□ 1.14
TRAFD1-201ENST00000257604 TOP2BQ02880 1626 aa22.2■■□□□ 1.14
TRAFD1-201ENST00000257604 CUX2O14529 1486 aa22.19■■□□□ 1.14
TRAFD1-201ENST00000257604 KIF27Q86VH2 1401 aa22.18■■□□□ 1.14
TRAFD1-201ENST00000257604 FANCD2Q9BXW9 1451 aa22.09■■□□□ 1.13
TRAFD1-201ENST00000257604 RAD54L2Q9Y4B4 1467 aa22.06■■□□□ 1.12
TRAFD1-201ENST00000257604 KANK4Q5T7N3 995 aaPredicted RBP22.06■■□□□ 1.12
TRAFD1-201ENST00000257604 FGD5Q6ZNL6 1462 aa22.05■■□□□ 1.12
TRAFD1-201ENST00000257604 KIF21BO75037 1637 aa22.01■■□□□ 1.11
TRAFD1-201ENST00000257604 VPS8Q8N3P4 1428 aa22■■□□□ 1.11
TRAFD1-201ENST00000257604 IGF1RP08069 1367 aa22■■□□□ 1.11
TRAFD1-201ENST00000257604 CARMIL1Q5VZK9 1371 aa21.99■■□□□ 1.11
TRAFD1-201ENST00000257604 TDRD9Q8NDG6 1382 aaKnown RBP21.99■■□□□ 1.11
TRAFD1-201ENST00000257604 BIVM-ERCC5R4GMW8 1640 aa21.98■■□□□ 1.11
TRAFD1-201ENST00000257604 PELP1Q8IZL8 1130 aaKnown RBP21.97■■□□□ 1.11
TRAFD1-201ENST00000257604 PRXQ9BXM0 1461 aa21.96■■□□□ 1.11
TRAFD1-201ENST00000257604 ARID3CA6NKF2 412 aa21.92■■□□□ 1.1
TRAFD1-201ENST00000257604 NEUROD1Q13562 356 aa21.91■■□□□ 1.1
TRAFD1-201ENST00000257604 ARAP1Q96P48 1450 aa21.88■■□□□ 1.09
TRAFD1-201ENST00000257604 FAM50AQ14320 339 aaKnown RBP21.82■■□□□ 1.08
TRAFD1-201ENST00000257604 POLA1P09884 1462 aaPredicted RBP21.81■■□□□ 1.08
TRAFD1-201ENST00000257604 TOPBP1Q92547 1522 aa21.81■■□□□ 1.08
TRAFD1-201ENST00000257604 YTHDC1Q96MU7 727 aaKnown RBP21.79■■□□□ 1.08
TRAFD1-201ENST00000257604 GTF3C3Q9Y5Q9 886 aa21.79■■□□□ 1.08
TRAFD1-201ENST00000257604 FBLN2P98095 1184 aa21.76■■□□□ 1.07
TRAFD1-201ENST00000257604 ARHGAP35Q9NRY4 1499 aa21.75■■□□□ 1.07
TRAFD1-201ENST00000257604 ERICH3Q5RHP9 1530 aa21.75■■□□□ 1.07
TRAFD1-201ENST00000257604 ACIN1Q9UKV3 1341 aaKnown RBP21.75■■□□□ 1.07
TRAFD1-201ENST00000257604 PDS5BQ9NTI5 1447 aa21.74■■□□□ 1.07
TRAFD1-201ENST00000257604 URB2Q14146 1524 aaKnown RBP21.72■■□□□ 1.07
TRAFD1-201ENST00000257604 FHOD3Q2V2M9 1422 aa21.71■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 77.5 ms