RNA–Protein interactions for RNA: ENST00000549358.5

TRAFD1-206, Transcript of TRAF-type zinc finger domain containing 1, humanhuman

APPRIS ALT2 TSL 4

Gene TRAFD1, Length 532 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAFD1-206ENST00000549358 NISCHQ9Y2I1 1504 aa27.57■■■□□ 2
TRAFD1-206ENST00000549358 ABCC9O60706 1549 aa25.41■■□□□ 1.66
TRAFD1-206ENST00000549358 AEBP2Q6ZN18 517 aaPredicted RBP25.27■■□□□ 1.64
TRAFD1-206ENST00000549358 CCDC180Q9P1Z9 1646 aa24.85■■□□□ 1.57
TRAFD1-206ENST00000549358 DNAJC5BQ9UF47 199 aa24.28■■□□□ 1.48
TRAFD1-206ENST00000549358 CHIC1Q5VXU3 224 aa24■■□□□ 1.43
TRAFD1-206ENST00000549358 RB1CC1Q8TDY2 1594 aa23.93■■□□□ 1.42
TRAFD1-206ENST00000549358 PABPN1Q86U42 306 aaKnown RBP eCLIP23.65■■□□□ 1.38
TRAFD1-206ENST00000549358 NACADO15069 1562 aa23.65■■□□□ 1.38
TRAFD1-206ENST00000549358 DCAF8L2P0C7V8 631 aa23.63■■□□□ 1.37
TRAFD1-206ENST00000549358 UNC13AQ9UPW8 1703 aa23.33■■□□□ 1.32
TRAFD1-206ENST00000549358 BICRAQ9NZM4 1560 aa23.24■■□□□ 1.31
TRAFD1-206ENST00000549358 MYO15BQ96JP2 1530 aa23.14■■□□□ 1.3
TRAFD1-206ENST00000549358 CECR2Q9BXF3 1484 aa22.92■■□□□ 1.26
TRAFD1-206ENST00000549358 CC2D2AQ9P2K1 1620 aa22.89■■□□□ 1.25
TRAFD1-206ENST00000549358 SHROOM4Q9ULL8 1493 aa22.83■■□□□ 1.25
TRAFD1-206ENST00000549358 ZCCHC6Q5VYS8 1495 aaKnown RBP22.73■■□□□ 1.23
TRAFD1-206ENST00000549358 EIF4G1Q04637 1599 aaKnown RBP22.72■■□□□ 1.23
TRAFD1-206ENST00000549358 SCRIBQ14160 1630 aa22.69■■□□□ 1.22
TRAFD1-206ENST00000549358 DCAF1Q9Y4B6 1507 aa22.69■■□□□ 1.22
TRAFD1-206ENST00000549358 DNAJC5Q9H3Z4 198 aa22.6■■□□□ 1.21
TRAFD1-206ENST00000549358 CUX2O14529 1486 aa22.02■■□□□ 1.12
TRAFD1-206ENST00000549358 ERCC6Q03468 1493 aa21.96■■□□□ 1.11
TRAFD1-206ENST00000549358 NCAPD3P42695 1498 aa21.87■■□□□ 1.09
TRAFD1-206ENST00000549358 ATAD2BQ9ULI0 1458 aa21.75■■□□□ 1.07
TRAFD1-206ENST00000549358 NESP48681 1621 aa21.69■■□□□ 1.06
TRAFD1-206ENST00000549358 SMARCA2P51531 1590 aa21.62■■□□□ 1.05
TRAFD1-206ENST00000549358 HMGXB3Q12766 1538 aa21.61■■□□□ 1.05
TRAFD1-206ENST00000549358 SENP3Q9H4L4 574 aaPredicted RBP21.57■■□□□ 1.04
TRAFD1-206ENST00000549358 SMARCA4P51532 1647 aa21.57■■□□□ 1.04
TRAFD1-206ENST00000549358 BAZ1BQ9UIG0 1483 aaKnown RBP21.51■■□□□ 1.03
TRAFD1-206ENST00000549358 THOC2Q8NI27 1593 aaKnown RBP21.48■■□□□ 1.03
TRAFD1-206ENST00000549358 TRIM41Q8WV44 630 aa21.48■■□□□ 1.03
TRAFD1-206ENST00000549358 BAZ1AQ9NRL2 1556 aaPredicted RBP21.42■■□□□ 1.02
TRAFD1-206ENST00000549358 LAMC3Q9Y6N6 1575 aa21.41■■□□□ 1.02
TRAFD1-206ENST00000549358 PDS5BQ9NTI5 1447 aa21.36■■□□□ 1.01
TRAFD1-206ENST00000549358 PEG3Q9GZU2 1588 aa21.34■■□□□ 1.01
TRAFD1-206ENST00000549358 KIF21AQ7Z4S6 1674 aa21.32■■□□□ 1
TRAFD1-206ENST00000549358 PHF23Q9BUL5 403 aaPredicted RBP21.28■■□□□ 1
TRAFD1-206ENST00000549358 MROH2BQ7Z745 1585 aa21.25■□□□□ 0.99
TRAFD1-206ENST00000549358 CADPSQ9ULU8 1353 aa21.21■□□□□ 0.99
TRAFD1-206ENST00000549358 MRC2Q9UBG0 1479 aa21.17■□□□□ 0.98
TRAFD1-206ENST00000549358 WDR62O43379 1518 aa21.11■□□□□ 0.97
TRAFD1-206ENST00000549358 OSCARQ8IYS5 282 aa21.04■□□□□ 0.96
TRAFD1-206ENST00000549358 CEP164Q9UPV0 1460 aa21.01■□□□□ 0.95
TRAFD1-206ENST00000549358 WIZO95785 1651 aa20.97■□□□□ 0.95
TRAFD1-206ENST00000549358 FANCD2Q9BXW9 1451 aa20.96■□□□□ 0.95
TRAFD1-206ENST00000549358 CFTRP13569 1480 aa20.84■□□□□ 0.93
TRAFD1-206ENST00000549358 URB2Q14146 1524 aaKnown RBP20.8■□□□□ 0.92
TRAFD1-206ENST00000549358 RIMBP3CA6NJZ7 1639 aa20.73■□□□□ 0.91
TRAFD1-206ENST00000549358 RIMBP3BA6NNM3 1639 aa20.73■□□□□ 0.91
TRAFD1-206ENST00000549358 RIMBP3Q9UFD9 1639 aa20.73■□□□□ 0.91
TRAFD1-206ENST00000549358 RSF1Q96T23 1441 aaPredicted RBP20.67■□□□□ 0.9
TRAFD1-206ENST00000549358 TOP2AP11388 1531 aaKnown RBP20.64■□□□□ 0.9
TRAFD1-206ENST00000549358 ZNF608Q9ULD9 1512 aaPredicted RBP20.64■□□□□ 0.9
TRAFD1-206ENST00000549358 ARHGEF11O15085 1522 aa20.63■□□□□ 0.89
TRAFD1-206ENST00000549358 CYB5RLQ6IPT4 315 aa20.61■□□□□ 0.89
TRAFD1-206ENST00000549358 IFT140Q96RY7 1462 aa20.6■□□□□ 0.89
TRAFD1-206ENST00000549358 TRHP20396 242 aaPredicted RBP20.53■□□□□ 0.88
TRAFD1-206ENST00000549358 TOPBP1Q92547 1522 aa20.49■□□□□ 0.87
TRAFD1-206ENST00000549358 PRDM2Q13029 1718 aa20.48■□□□□ 0.87
TRAFD1-206ENST00000549358 CCDC88BA6NC98 1476 aa20.48■□□□□ 0.87
TRAFD1-206ENST00000549358 EIF4G3O43432 1585 aaKnown RBP20.45■□□□□ 0.86
TRAFD1-206ENST00000549358 FBLN2P98095 1184 aa20.44■□□□□ 0.86
TRAFD1-206ENST00000549358 AQRO60306 1485 aaKnown RBP eCLIP20.43■□□□□ 0.86
TRAFD1-206ENST00000549358 ABCC8Q09428 1581 aa20.42■□□□□ 0.86
TRAFD1-206ENST00000549358 ARAP1Q96P48 1450 aa20.39■□□□□ 0.85
TRAFD1-206ENST00000549358 CHD1O14646 1710 aa20.36■□□□□ 0.85
TRAFD1-206ENST00000549358 DNMBPQ6XZF7 1577 aa20.35■□□□□ 0.85
TRAFD1-206ENST00000549358 TARBP1Q13395 1621 aaKnown RBP20.32■□□□□ 0.84
TRAFD1-206ENST00000549358 POLA1P09884 1462 aaPredicted RBP20.26■□□□□ 0.83
TRAFD1-206ENST00000549358 TDRD9Q8NDG6 1382 aaKnown RBP20.24■□□□□ 0.83
TRAFD1-206ENST00000549358 RAD54L2Q9Y4B4 1467 aa20.24■□□□□ 0.83
TRAFD1-206ENST00000549358 SOGA1O94964 1423 aa20.21■□□□□ 0.83
TRAFD1-206ENST00000549358 CHMP7Q8WUX9 453 aaPredicted RBP20.19■□□□□ 0.82
TRAFD1-206ENST00000549358 SNAPC4Q5SXM2 1469 aa20.16■□□□□ 0.82
TRAFD1-206ENST00000549358 CLASP1Q7Z460 1538 aa20.14■□□□□ 0.81
TRAFD1-206ENST00000549358 FOXD1Q16676 465 aa20.1■□□□□ 0.81
TRAFD1-206ENST00000549358 SYNJ1O43426 1573 aa20.09■□□□□ 0.81
TRAFD1-206ENST00000549358 FGD5Q6ZNL6 1462 aa20.08■□□□□ 0.81
TRAFD1-206ENST00000549358 MAGI1Q96QZ7 1491 aaPredicted RBP20.06■□□□□ 0.8
TRAFD1-206ENST00000549358 GRIN2BQ13224 1484 aa20.04■□□□□ 0.8
TRAFD1-206ENST00000549358 WDR97A6NE52 1622 aa20.03■□□□□ 0.8
TRAFD1-206ENST00000549358 SYNJ2O15056 1496 aa20.02■□□□□ 0.8
TRAFD1-206ENST00000549358 GAPVD1Q14C86 1478 aa20■□□□□ 0.79
TRAFD1-206ENST00000549358 CUX1P39880 1505 aa19.98■□□□□ 0.79
TRAFD1-206ENST00000549358 PBRM1Q86U86 1689 aa19.87■□□□□ 0.77
TRAFD1-206ENST00000549358 ERCC6L2Q5T890 1561 aa19.83■□□□□ 0.77
TRAFD1-206ENST00000549358 ABCA10Q8WWZ4 1543 aa19.81■□□□□ 0.76
TRAFD1-206ENST00000549358 ABCA5Q8WWZ7 1642 aa19.79■□□□□ 0.76
TRAFD1-206ENST00000549358 GRIN2AQ12879 1464 aa19.78■□□□□ 0.76
TRAFD1-206ENST00000549358 CEP170Q5SW79 1584 aa19.74■□□□□ 0.75
TRAFD1-206ENST00000549358 NUP160Q12769 1436 aa19.71■□□□□ 0.75
TRAFD1-206ENST00000549358 WRNQ14191 1432 aaPredicted RBP eCLIP19.68■□□□□ 0.74
TRAFD1-206ENST00000549358 ADAMTS12P58397 1594 aa19.67■□□□□ 0.74
TRAFD1-206ENST00000549358 FHAD1B1AJZ9 1412 aa19.65■□□□□ 0.74
TRAFD1-206ENST00000549358 SHROOM2Q13796 1616 aa19.65■□□□□ 0.74
TRAFD1-206ENST00000549358 PRG4Q92954 1404 aaPredicted RBP19.61■□□□□ 0.73
TRAFD1-206ENST00000549358 KIF13AQ9H1H9 1805 aa19.61■□□□□ 0.73
TRAFD1-206ENST00000549358 FAM69CQ0P6D2 419 aa19.61■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 196.4 ms