Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 LMO7-210ENST00000482116 935 ntTSL 38.95□□□□□ -0.985e-7■■■■□ 20.9
YBX3P16989 LMO7-218ENST00000526202 4121 ntTSL 2 BASIC8.74□□□□□ -1.015e-7■■■■□ 20.9
YBX3P16989 LMO7-205ENST00000377534 4896 ntAPPRIS ALT2 TSL 1 (best) BASIC8.39□□□□□ -1.075e-7■■■■□ 20.9
YBX3P16989 LMO7-207ENST00000465261 5580 ntTSL 1 (best) BASIC8.37□□□□□ -1.075e-7■■■■□ 20.9
YBX3P16989 LMO7-203ENST00000357063 8237 ntAPPRIS ALT2 TSL 5 BASIC7.56□□□□□ -1.25e-7■■■■□ 20.9
YBX3P16989 LMO7-202ENST00000341547 7237 ntAPPRIS P3 TSL 1 (best) BASIC7.5□□□□□ -1.215e-7■■■■□ 20.9
YBX3P16989 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC16.54■□□□□ 0.242e-8■■■■□ 20.9
YBX3P16989 CNP-202ENST00000393892 5217 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.232e-8■■■■□ 20.9
YBX3P16989 CDK5RAP2-216ENST00000483412 6235 ntTSL 1 (best)9.64□□□□□ -0.875e-7■■■■□ 20.9
YBX3P16989 UBA2-203ENST00000586313 1458 ntTSL 230.48■■■□□ 2.471e-7■■■■□ 20.9
YBX3P16989 PIAS4-203ENST00000596144 587 ntTSL 324.68■■□□□ 1.542e-6■■■■□ 20.9
YBX3P16989 PIAS4-206ENST00000601439 235 ntTSL 310.36□□□□□ -0.752e-6■■■■□ 20.9
YBX3P16989 GPN1-204ENST00000436280 577 ntTSL 218.52■□□□□ 0.562e-11■■■■□ 20.9
YBX3P16989 GPN1-209ENST00000503738 984 ntTSL 5 BASIC13.61□□□□□ -0.232e-11■■■■□ 20.9
YBX3P16989 GPN1-202ENST00000407583 1395 ntTSL 1 (best) BASIC12.83□□□□□ -0.362e-11■■■■□ 20.9
YBX3P16989 GPN1-206ENST00000461249 969 ntTSL 1 (best)10.1□□□□□ -0.792e-11■■■■□ 20.9
YBX3P16989 GPN1-210ENST00000515877 1646 ntTSL 5 BASIC9.45□□□□□ -0.92e-11■■■■□ 20.9
YBX3P16989 PANK4-205ENST00000486396 879 ntTSL 221.82■■□□□ 1.085e-11■■■■□ 20.9
YBX3P16989 PANK4-209ENST00000502770 1041 ntTSL 1 (best)18.76■□□□□ 0.595e-11■■■■□ 20.9
YBX3P16989 NAE1-217ENST00000567521 765 ntTSL 37.75□□□□□ -1.175e-8■■■■□ 20.9
YBX3P16989 PFKP-205ENST00000413079 496 ntTSL 318.11■□□□□ 0.493e-23■■■■□ 20.9
YBX3P16989 RFC2-210ENST00000493156 782 ntTSL 526.52■■□□□ 1.842e-7■■■■□ 20.9
YBX3P16989 RFC2-203ENST00000463194 853 ntTSL 325.35■■□□□ 1.652e-7■■■■□ 20.9
YBX3P16989 RFC2-206ENST00000479105 957 ntTSL 510.1□□□□□ -0.792e-7■■■■□ 20.9
YBX3P16989 RFC2-209ENST00000491206 726 ntTSL 37.08□□□□□ -1.282e-7■■■■□ 20.9
YBX3P16989 NT5C2-201ENST00000343289 3435 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.412e-8■■■■□ 20.9
YBX3P16989 NT5C2-203ENST00000404739 3365 ntAPPRIS P1 TSL 1 (best) BASIC8.19□□□□□ -1.12e-8■■■■□ 20.9
YBX3P16989 NT5C2-202ENST00000369857 2625 ntTSL 27.39□□□□□ -1.232e-8■■■■□ 20.9
YBX3P16989 RSC1A1-201ENST00000345034 1854 ntAPPRIS P1 BASIC8.48□□□□□ -1.056e-11■■■■□ 20.8
YBX3P16989 TGM2-205ENST00000469269 3467 ntTSL 211.73□□□□□ -0.532e-8■■■■□ 20.8
YBX3P16989 MATR3-225ENST00000514528 532 ntTSL 423.84■■□□□ 1.412e-9■■■■□ 20.8
YBX3P16989 MATR3-222ENST00000513678 444 ntTSL 222.74■■□□□ 1.232e-9■■■■□ 20.8
YBX3P16989 MATR3-220ENST00000512876 575 ntTSL 322.74■■□□□ 1.232e-9■■■■□ 20.8
YBX3P16989 MATR3-208ENST00000504045 1530 ntTSL 522.32■■□□□ 1.162e-9■■■■□ 20.8
YBX3P16989 MATR3-236ENST00000509644 750 ntTSL 318.17■□□□□ 0.52e-9■■■■□ 20.8
YBX3P16989 MATR3-217ENST00000511333 558 ntTSL 58.48□□□□□ -1.052e-9■■■■□ 20.8
YBX3P16989 MATR3-209ENST00000504311 423 ntTSL 36.98□□□□□ -1.292e-9■■■■□ 20.8
YBX3P16989 CCT3-208ENST00000415548 513 ntTSL 311.01□□□□□ -0.659e-12■■■■□ 20.8
YBX3P16989 PTDSS1-201ENST00000337004 2366 ntTSL 1 (best)21.85■■□□□ 1.091e-8■■■■□ 20.8
YBX3P16989 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.461e-8■■■■□ 20.8
YBX3P16989 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC22.56■■□□□ 1.26e-12■■■■□ 20.8
YBX3P16989 TSTA3-207ENST00000527677 541 ntTSL 220.6■□□□□ 0.894e-9■■■■□ 20.8
YBX3P16989 TSTA3-202ENST00000524719 762 ntTSL 318.98■□□□□ 0.634e-9■■■■□ 20.8
YBX3P16989 MAK16-201ENST00000360128 3991 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.369e-9■■■■□ 20.8
YBX3P16989 Y_RNA.136-201ENST00000363444 102 ntBASIC4.37□□□□□ -1.719e-6■■■■□ 20.8
YBX3P16989 IFNGR2-201ENST00000290219 2221 ntAPPRIS P3 TSL 1 (best) BASIC28.92■■■□□ 2.223e-7■■■■□ 20.8
YBX3P16989 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC26.53■■□□□ 1.843e-7■■■■□ 20.8
YBX3P16989 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC26.17■■□□□ 1.783e-7■■■■□ 20.8
YBX3P16989 IFNGR2-204ENST00000421802 727 ntTSL 316.78■□□□□ 0.285e-7■■■■□ 20.8
YBX3P16989 MAN2B1-205ENST00000465830 574 ntTSL 421.87■■□□□ 1.094e-6■■■■□ 20.8
YBX3P16989 MAN2B1-211ENST00000495617 732 ntTSL 321.28■■□□□ 14e-6■■■■□ 20.8
YBX3P16989 RFC2-212ENST00000497430 753 ntTSL 314.73□□□□□ -0.052e-7■■■■□ 20.8
YBX3P16989 HPCAL1-204ENST00000422133 587 ntTSL 313.03□□□□□ -0.323e-7■■■■□ 20.8
YBX3P16989 ANAPC16-203ENST00000478193 734 ntTSL 218.86■□□□□ 0.614e-7■■■■□ 20.8
YBX3P16989 ANAPC16-201ENST00000299381 3195 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.444e-7■■■■□ 20.8
YBX3P16989 ANAPC16-202ENST00000470481 1828 ntTSL 1 (best)11.63□□□□□ -0.554e-7■■■■□ 20.8
YBX3P16989 ANAPC16-205ENST00000621663 3567 ntAPPRIS P1 TSL 3 BASIC11.53□□□□□ -0.564e-7■■■■□ 20.8
YBX3P16989 ANAPC16-204ENST00000615507 3100 ntTSL 3 BASIC11.49□□□□□ -0.574e-7■■■■□ 20.8
YBX3P16989 ZNF121-202ENST00000586602 7177 ntAPPRIS P1 TSL 2 BASIC6.9□□□□□ -1.314e-13■■■■□ 20.8
YBX3P16989 NUSAP1-211ENST00000560318 485 ntTSL 517.17■□□□□ 0.345e-7■■■■□ 20.8
YBX3P16989 NUSAP1-208ENST00000559596 1629 ntAPPRIS P4 TSL 1 (best) BASIC13.74□□□□□ -0.215e-7■■■■□ 20.8
YBX3P16989 NUSAP1-203ENST00000450592 1301 ntAPPRIS ALT2 TSL 2 BASIC12.38□□□□□ -0.435e-7■■■■□ 20.8
YBX3P16989 NUSAP1-213ENST00000560898 708 ntTSL 311.88□□□□□ -0.515e-7■■■■□ 20.8
YBX3P16989 ARPC1B-206ENST00000429246 348 ntTSL 526■■□□□ 1.753e-13■■■■□ 20.8
YBX3P16989 ERAL1-201ENST00000254928 1925 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.015e-7■■■■□ 20.7
YBX3P16989 ERAL1-203ENST00000461894 1628 ntTSL 1 (best)14.63□□□□□ -0.075e-7■■■■□ 20.7
YBX3P16989 HDHD5-206ENST00000480451 1028 ntTSL 231.43■■■□□ 2.621e-6■■■■□ 20.7
YBX3P16989 HDHD5-204ENST00000463033 643 ntTSL 331.42■■■□□ 2.621e-6■■■■□ 20.7
YBX3P16989 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC31.06■■■□□ 2.564e-11■■■■□ 20.7
YBX3P16989 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC30.59■■■□□ 2.491e-6■■■■□ 20.7
YBX3P16989 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC27.95■■■□□ 2.061e-6■■■■□ 20.7
YBX3P16989 EFNA1-204ENST00000474413 1083 ntTSL 323.65■■□□□ 1.384e-11■■■■□ 20.7
YBX3P16989 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC21.81■■□□□ 1.081e-6■■■■□ 20.7
YBX3P16989 SIL1-214ENST00000513453 572 ntTSL 521.39■■□□□ 1.011e-6■■■■□ 20.7
YBX3P16989 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.971e-6■■■■□ 20.7
YBX3P16989 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.861e-6■■■■□ 20.7
YBX3P16989 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC20.25■□□□□ 0.831e-6■■■■□ 20.7
YBX3P16989 EFNA1-203ENST00000469878 1288 ntTSL 318.4■□□□□ 0.544e-11■■■■□ 20.7
YBX3P16989 SIL1-207ENST00000505830 496 ntTSL 217.83■□□□□ 0.441e-6■■■■□ 20.7
YBX3P16989 SIL1-205ENST00000504666 547 ntTSL 217.7■□□□□ 0.421e-6■■■■□ 20.7
YBX3P16989 EFNA1-201ENST00000368406 1444 ntTSL 1 (best) BASIC16.08■□□□□ 0.164e-11■■■■□ 20.7
YBX3P16989 HACL1-204ENST00000421993 861 ntTSL 315.99■□□□□ 0.153e-6■■■■□ 20.7
YBX3P16989 SIL1-212ENST00000509400 547 ntTSL 415.11■□□□□ 0.011e-6■■■■□ 20.7
YBX3P16989 SIL1-210ENST00000508639 675 ntTSL 314.63□□□□□ -0.071e-6■■■■□ 20.7
YBX3P16989 SIL1-209ENST00000507002 581 ntTSL 314.61□□□□□ -0.071e-6■■■■□ 20.7
YBX3P16989 HACL1-210ENST00000460907 565 ntTSL 214.39□□□□□ -0.113e-6■■■■□ 20.7
YBX3P16989 HACL1-206ENST00000435217 1269 ntTSL 2 BASIC14.39□□□□□ -0.113e-6■■■■□ 20.7
YBX3P16989 HACL1-212ENST00000472857 558 ntTSL 213.71□□□□□ -0.213e-6■■■■□ 20.7
YBX3P16989 HACL1-203ENST00000414979 569 ntTSL 413.63□□□□□ -0.233e-6■■■■□ 20.7
YBX3P16989 HACL1-205ENST00000422591 1637 ntTSL 513.44□□□□□ -0.263e-6■■■■□ 20.7
YBX3P16989 HACL1-201ENST00000321169 2266 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.33e-6■■■■□ 20.7
YBX3P16989 HACL1-202ENST00000383779 1771 ntTSL 1 (best)12.8□□□□□ -0.363e-6■■■■□ 20.7
YBX3P16989 HACL1-209ENST00000457447 1721 ntTSL 2 BASIC12.59□□□□□ -0.393e-6■■■■□ 20.7
YBX3P16989 SIL1-206ENST00000505353 442 ntTSL 312.3□□□□□ -0.441e-6■■■■□ 20.7
YBX3P16989 HACL1-213ENST00000628377 2214 ntTSL 5 BASIC11.9□□□□□ -0.513e-6■■■■□ 20.7
YBX3P16989 HACL1-207ENST00000451445 1734 ntTSL 2 BASIC11.62□□□□□ -0.553e-6■■■■□ 20.7
YBX3P16989 HACL1-208ENST00000456194 1880 ntTSL 2 BASIC11.3□□□□□ -0.63e-6■■■■□ 20.7
YBX3P16989 IDE-203ENST00000436178 772 ntTSL 56.81□□□□□ -1.321e-6■■■■□ 20.7
YBX3P16989 SAP30BP-216ENST00000581385 253 ntTSL 21.61□□□□□ -2.151e-6■■■■□ 20.7
YBX3P16989 DDOST-205ENST00000477229 766 ntTSL 221.68■■□□□ 1.063e-13■■■■□ 20.7
Retrieved 100 of 29,075 protein–RNA pairs in 712.6 ms