RNA–Protein interactions for RNA: ENST00000393888.1

CNP-201, Transcript of 2',3'-cyclic nucleotide 3' phosphodiesterase, humanhuman

TSL 1 (best) BASIC

Gene CNP, Length 2,583 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNP-201ENST00000393888 NISCHQ9Y2I1 1504 aa31.88■■■□□ 2.69
CNP-201ENST00000393888 SHROOM4Q9ULL8 1493 aa28.21■■■□□ 2.11
CNP-201ENST00000393888 SUPT5HO00267 1087 aaKnown RBP27.97■■■□□ 2.07
CNP-201ENST00000393888 HRCP23327 699 aa27.63■■■□□ 2.01
CNP-201ENST00000393888 CCDC180Q9P1Z9 1646 aa27.62■■■□□ 2.01
CNP-201ENST00000393888 MYO15BQ96JP2 1530 aa27.45■■□□□ 1.99
CNP-201ENST00000393888 PCGF6Q9BYE7 350 aa27.36■■□□□ 1.97
CNP-201ENST00000393888 CHIC1Q5VXU3 224 aa27.31■■□□□ 1.96
CNP-201ENST00000393888 PPARGC1BQ86YN6 1023 aaKnown RBP27.26■■□□□ 1.95
CNP-201ENST00000393888 ZCCHC6Q5VYS8 1495 aaKnown RBP27.05■■□□□ 1.92
CNP-201ENST00000393888 DCAF8L2P0C7V8 631 aa26.83■■□□□ 1.89
CNP-201ENST00000393888 LOC105371045A0A1W2PR82 267 aa26.77■■□□□ 1.88
CNP-201ENST00000393888 ABCC9O60706 1549 aa26.75■■□□□ 1.87
CNP-201ENST00000393888 DCAF1Q9Y4B6 1507 aa26.62■■□□□ 1.85
CNP-201ENST00000393888 TRIM26Q12899 539 aaPredicted RBP26.44■■□□□ 1.82
CNP-201ENST00000393888 SCAF1Q9H7N4 1312 aaKnown RBP26.04■■□□□ 1.76
CNP-201ENST00000393888 ZEB1P37275 1124 aaPredicted RBP26.02■■□□□ 1.76
CNP-201ENST00000393888 PELP1Q8IZL8 1130 aaKnown RBP26■■□□□ 1.75
CNP-201ENST00000393888 FAM9AQ8IZU1 332 aaPredicted RBP25.92■■□□□ 1.74
CNP-201ENST00000393888 EHMT2Q96KQ7 1210 aa25.9■■□□□ 1.74
CNP-201ENST00000393888 NACADO15069 1562 aa25.86■■□□□ 1.73
CNP-201ENST00000393888 TRIM41Q8WV44 630 aa25.82■■□□□ 1.72
CNP-201ENST00000393888 RB1CC1Q8TDY2 1594 aa25.75■■□□□ 1.71
CNP-201ENST00000393888 SCRIBQ14160 1630 aa25.61■■□□□ 1.69
CNP-201ENST00000393888 RSF1Q96T23 1441 aaPredicted RBP25.59■■□□□ 1.69
CNP-201ENST00000393888 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.49■■□□□ 1.67
CNP-201ENST00000393888 NEUROD1Q13562 356 aa25.46■■□□□ 1.67
CNP-201ENST00000393888 ACIN1Q9UKV3 1341 aaKnown RBP25.45■■□□□ 1.66
CNP-201ENST00000393888 CCER1Q8TC90 406 aaPredicted RBP25.37■■□□□ 1.65
CNP-201ENST00000393888 UNC13AQ9UPW8 1703 aa25.29■■□□□ 1.64
CNP-201ENST00000393888 GTF3C3Q9Y5Q9 886 aa25.29■■□□□ 1.64
CNP-201ENST00000393888 PABPN1Q86U42 306 aaKnown RBP eCLIP25.27■■□□□ 1.64
CNP-201ENST00000393888 DIEXFQ68CQ4 756 aaKnown RBP25.22■■□□□ 1.63
CNP-201ENST00000393888 TTBK1Q5TCY1 1321 aaPredicted RBP25.2■■□□□ 1.62
CNP-201ENST00000393888 CENPBP07199 599 aaPredicted RBP25.12■■□□□ 1.61
CNP-201ENST00000393888 BICRAQ9NZM4 1560 aa25.07■■□□□ 1.6
CNP-201ENST00000393888 CECR2Q9BXF3 1484 aa25.04■■□□□ 1.6
CNP-201ENST00000393888 MROH2BQ7Z745 1585 aa24.96■■□□□ 1.59
CNP-201ENST00000393888 YTHDC1Q96MU7 727 aaKnown RBP24.91■■□□□ 1.58
CNP-201ENST00000393888 WIZO95785 1651 aa24.9■■□□□ 1.58
CNP-201ENST00000393888 MYT1Q01538 1121 aa24.8■■□□□ 1.56
CNP-201ENST00000393888 ZNF316A6NFI3 1004 aaPredicted RBP24.78■■□□□ 1.56
CNP-201ENST00000393888 CEP162Q5TB80 1403 aa24.69■■□□□ 1.54
CNP-201ENST00000393888 ABCC8Q09428 1581 aa24.68■■□□□ 1.54
CNP-201ENST00000393888 WRNQ14191 1432 aaPredicted RBP eCLIP24.67■■□□□ 1.54
CNP-201ENST00000393888 MIER1Q8N108 512 aa24.65■■□□□ 1.54
CNP-201ENST00000393888 CCDC88BA6NC98 1476 aa24.65■■□□□ 1.54
CNP-201ENST00000393888 EIF4G1Q04637 1599 aaKnown RBP24.64■■□□□ 1.54
CNP-201ENST00000393888 BAZ1AQ9NRL2 1556 aaPredicted RBP24.59■■□□□ 1.53
CNP-201ENST00000393888 SOGA1O94964 1423 aa24.57■■□□□ 1.52
CNP-201ENST00000393888 UBTFP17480 764 aaKnown RBP24.57■■□□□ 1.52
CNP-201ENST00000393888 HNRNPUL2Q1KMD3 747 aaKnown RBP24.52■■□□□ 1.52
CNP-201ENST00000393888 TNIKQ9UKE5 1360 aa24.49■■□□□ 1.51
CNP-201ENST00000393888 RUSC2Q8N2Y8 1516 aa24.47■■□□□ 1.51
CNP-201ENST00000393888 CSRNP3Q8WYN3 585 aa24.44■■□□□ 1.5
CNP-201ENST00000393888 SMARCA4P51532 1647 aa24.41■■□□□ 1.5
CNP-201ENST00000393888 TOP2AP11388 1531 aaKnown RBP24.3■■□□□ 1.48
CNP-201ENST00000393888 SMARCA2P51531 1590 aa24.27■■□□□ 1.48
CNP-201ENST00000393888 GOLGA3Q08378 1498 aa24.24■■□□□ 1.47
CNP-201ENST00000393888 EEA1Q15075 1411 aa24.2■■□□□ 1.46
CNP-201ENST00000393888 RANGAP1P46060 587 aaPredicted RBP24.19■■□□□ 1.46
CNP-201ENST00000393888 ATAD2BQ9ULI0 1458 aa24.14■■□□□ 1.45
CNP-201ENST00000393888 SUPT16HQ9Y5B9 1047 aaKnown RBP24.11■■□□□ 1.45
CNP-201ENST00000393888 CC2D2AQ9P2K1 1620 aa24.09■■□□□ 1.45
CNP-201ENST00000393888 CLIP1P30622 1438 aa24.08■■□□□ 1.45
CNP-201ENST00000393888 APLP2Q06481 763 aa24.07■■□□□ 1.44
CNP-201ENST00000393888 PEG3Q9GZU2 1588 aa24.03■■□□□ 1.44
CNP-201ENST00000393888 DNAJC5BQ9UF47 199 aa24.02■■□□□ 1.44
CNP-201ENST00000393888 CEP164Q9UPV0 1460 aa24■■□□□ 1.43
CNP-201ENST00000393888 VPS8Q8N3P4 1428 aa23.99■■□□□ 1.43
CNP-201ENST00000393888 BAZ1BQ9UIG0 1483 aaKnown RBP23.98■■□□□ 1.43
CNP-201ENST00000393888 NCAPD3P42695 1498 aa23.93■■□□□ 1.42
CNP-201ENST00000393888 TSHZ2Q9NRE2 1034 aa23.92■■□□□ 1.42
CNP-201ENST00000393888 SYNJ1O43426 1573 aa23.9■■□□□ 1.42
CNP-201ENST00000393888 KIF21BO75037 1637 aa23.9■■□□□ 1.42
CNP-201ENST00000393888 DHX57Q6P158 1386 aaKnown RBP23.9■■□□□ 1.42
CNP-201ENST00000393888 RAPGEF2Q9Y4G8 1499 aa23.89■■□□□ 1.41
CNP-201ENST00000393888 CLSPNQ9HAW4 1339 aa23.84■■□□□ 1.41
CNP-201ENST00000393888 KCNH8Q96L42 1107 aa23.82■■□□□ 1.4
CNP-201ENST00000393888 HMGXB3Q12766 1538 aa23.81■■□□□ 1.4
CNP-201ENST00000393888 BCANQ96GW7 911 aa23.77■■□□□ 1.4
CNP-201ENST00000393888 ANP32EQ9BTT0 268 aa23.76■■□□□ 1.39
CNP-201ENST00000393888 KANK4Q5T7N3 995 aaPredicted RBP23.76■■□□□ 1.39
CNP-201ENST00000393888 ITGAEP38570 1179 aa23.69■■□□□ 1.38
CNP-201ENST00000393888 FKBP8Q14318 412 aa23.59■■□□□ 1.37
CNP-201ENST00000393888 ARAP1Q96P48 1450 aa23.58■■□□□ 1.37
CNP-201ENST00000393888 BCL11AQ9H165 835 aa23.51■■□□□ 1.35
CNP-201ENST00000393888 DDX10Q13206 875 aaKnown RBP23.51■■□□□ 1.35
CNP-201ENST00000393888 RRBP1Q9P2E9 1410 aaKnown RBP23.49■■□□□ 1.35
CNP-201ENST00000393888 CCNB3Q8WWL7 1395 aa23.46■■□□□ 1.35
CNP-201ENST00000393888 HIRIP3Q9BW71 556 aaPredicted RBP23.42■■□□□ 1.34
CNP-201ENST00000393888 TOP2BQ02880 1626 aa23.41■■□□□ 1.34
CNP-201ENST00000393888 RAB3GAP2Q9H2M9 1393 aa23.41■■□□□ 1.34
CNP-201ENST00000393888 PRXQ9BXM0 1461 aa23.4■■□□□ 1.34
CNP-201ENST00000393888 NESP48681 1621 aa23.4■■□□□ 1.34
CNP-201ENST00000393888 SIN3AQ96ST3 1273 aa23.39■■□□□ 1.34
CNP-201ENST00000393888 RBM19Q9Y4C8 960 aaKnown RBP23.39■■□□□ 1.34
CNP-201ENST00000393888 CUX2O14529 1486 aa23.39■■□□□ 1.34
CNP-201ENST00000393888 TRIM52Q96A61 297 aa23.39■■□□□ 1.33
CNP-201ENST00000393888 MAPKBP1O60336 1514 aa23.37■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms