RNA–Protein interactions for RNA: ENST00000368407.7

EFNA1-202, Transcript of ephrin A1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene EFNA1, Length 1,926 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
EFNA1-202ENST00000368407 NISCHQ9Y2I1 1504 aa59.93■■■■■ 7.18
EFNA1-202ENST00000368407 CCDC180Q9P1Z9 1646 aa52.62■■■■■ 6.01
EFNA1-202ENST00000368407 ABCC9O60706 1549 aa50.66■■■■■ 5.7
EFNA1-202ENST00000368407 ZCCHC6Q5VYS8 1495 aaKnown RBP50.17■■■■■ 5.62
EFNA1-202ENST00000368407 DCAF8L2P0C7V8 631 aa49.81■■■■■ 5.56
EFNA1-202ENST00000368407 DCAF1Q9Y4B6 1507 aa49.53■■■■■ 5.52
EFNA1-202ENST00000368407 MYO15BQ96JP2 1530 aa49.28■■■■■ 5.48
EFNA1-202ENST00000368407 NACADO15069 1562 aa49.25■■■■■ 5.48
EFNA1-202ENST00000368407 RB1CC1Q8TDY2 1594 aa49.04■■■■■ 5.44
EFNA1-202ENST00000368407 SCRIBQ14160 1630 aa48.32■■■■■ 5.33
EFNA1-202ENST00000368407 SHROOM4Q9ULL8 1493 aa48.29■■■■■ 5.32
EFNA1-202ENST00000368407 UNC13AQ9UPW8 1703 aa47.99■■■■■ 5.27
EFNA1-202ENST00000368407 BICRAQ9NZM4 1560 aa47.62■■■■■ 5.21
EFNA1-202ENST00000368407 PABPN1Q86U42 306 aaKnown RBP eCLIP47.62■■■■■ 5.21
EFNA1-202ENST00000368407 CECR2Q9BXF3 1484 aa46.68■■■■■ 5.06
EFNA1-202ENST00000368407 BAZ1AQ9NRL2 1556 aaPredicted RBP46.33■■■■■ 5.01
EFNA1-202ENST00000368407 MROH2BQ7Z745 1585 aa46.28■■■■■ 5
EFNA1-202ENST00000368407 EIF4G1Q04637 1599 aaKnown RBP46.26■■■■■ 5
EFNA1-202ENST00000368407 SMARCA4P51532 1647 aa46.25■■■■■ 4.99
EFNA1-202ENST00000368407 RSF1Q96T23 1441 aaPredicted RBP46.16■■■■■ 4.98
EFNA1-202ENST00000368407 SUPT5HO00267 1087 aaKnown RBP45.99■■■■■ 4.95
EFNA1-202ENST00000368407 WIZO95785 1651 aa45.83■■■■■ 4.93
EFNA1-202ENST00000368407 CC2D2AQ9P2K1 1620 aa45.79■■■■■ 4.92
EFNA1-202ENST00000368407 ATAD2BQ9ULI0 1458 aa45.75■■■■■ 4.91
EFNA1-202ENST00000368407 PEG3Q9GZU2 1588 aa45.71■■■■■ 4.91
EFNA1-202ENST00000368407 SMARCA2P51531 1590 aa45.66■■■■■ 4.9
EFNA1-202ENST00000368407 DNAJC5BQ9UF47 199 aa45.56■■■■■ 4.88
EFNA1-202ENST00000368407 NCAPD3P42695 1498 aa45.5■■■■■ 4.87
EFNA1-202ENST00000368407 BAZ1BQ9UIG0 1483 aaKnown RBP45.42■■■■■ 4.86
EFNA1-202ENST00000368407 HMGXB3Q12766 1538 aa45.34■■■■■ 4.85
EFNA1-202ENST00000368407 TOP2AP11388 1531 aaKnown RBP45.33■■■■■ 4.85
EFNA1-202ENST00000368407 CCDC88BA6NC98 1476 aa44.87■■■■■ 4.77
EFNA1-202ENST00000368407 CADPSQ9ULU8 1353 aa44.28■■■■■ 4.68
EFNA1-202ENST00000368407 CFTRP13569 1480 aa44.24■■■■■ 4.67
EFNA1-202ENST00000368407 NESP48681 1621 aa44.2■■■■■ 4.67
EFNA1-202ENST00000368407 LAMC3Q9Y6N6 1575 aa44.06■■■■■ 4.64
EFNA1-202ENST00000368407 PRDM2Q13029 1718 aa43.84■■■■■ 4.61
EFNA1-202ENST00000368407 FANCD2Q9BXW9 1451 aa43.78■■■■■ 4.6
EFNA1-202ENST00000368407 PDS5BQ9NTI5 1447 aa43.78■■■■■ 4.6
EFNA1-202ENST00000368407 ABCC8Q09428 1581 aa43.64■■■■■ 4.58
EFNA1-202ENST00000368407 KIF21AQ7Z4S6 1674 aa43.59■■■■■ 4.57
EFNA1-202ENST00000368407 CEP164Q9UPV0 1460 aa43.58■■■■■ 4.57
EFNA1-202ENST00000368407 CHIC1Q5VXU3 224 aa43.56■■■■■ 4.56
EFNA1-202ENST00000368407 ERCC6Q03468 1493 aa43.51■■■■■ 4.56
EFNA1-202ENST00000368407 WRNQ14191 1432 aaPredicted RBP eCLIP43.47■■■■■ 4.55
EFNA1-202ENST00000368407 CUX1P39880 1505 aa43.34■■■■■ 4.53
EFNA1-202ENST00000368407 SYNJ1O43426 1573 aa43.32■■■■■ 4.53
EFNA1-202ENST00000368407 HRCP23327 699 aa43.31■■■■■ 4.52
EFNA1-202ENST00000368407 URB2Q14146 1524 aaKnown RBP43.3■■■■■ 4.52
EFNA1-202ENST00000368407 TRIM41Q8WV44 630 aa43.29■■■■■ 4.52
EFNA1-202ENST00000368407 MRC2Q9UBG0 1479 aa43.27■■■■■ 4.52
EFNA1-202ENST00000368407 TOPBP1Q92547 1522 aa43.2■■■■■ 4.51
EFNA1-202ENST00000368407 DNMBPQ6XZF7 1577 aa43.19■■■■■ 4.51
EFNA1-202ENST00000368407 TOP2BQ02880 1626 aa43.19■■■■■ 4.5
EFNA1-202ENST00000368407 THOC2Q8NI27 1593 aaKnown RBP43.15■■■■■ 4.5
EFNA1-202ENST00000368407 BIVM-ERCC5R4GMW8 1640 aa43.14■■■■■ 4.5
EFNA1-202ENST00000368407 WDR62O43379 1518 aa43.08■■■■■ 4.49
EFNA1-202ENST00000368407 FGD5Q6ZNL6 1462 aa43■■■■■ 4.47
EFNA1-202ENST00000368407 POLA1P09884 1462 aaPredicted RBP42.93■■■■■ 4.46
EFNA1-202ENST00000368407 RAD54L2Q9Y4B4 1467 aa42.8■■■■■ 4.44
EFNA1-202ENST00000368407 SOGA1O94964 1423 aa42.78■■■■■ 4.44
EFNA1-202ENST00000368407 CUX2O14529 1486 aa42.77■■■■■ 4.44
EFNA1-202ENST00000368407 TARBP1Q13395 1621 aaKnown RBP42.61■■■■■ 4.41
EFNA1-202ENST00000368407 IFT140Q96RY7 1462 aa42.6■■■■■ 4.41
EFNA1-202ENST00000368407 ABCA10Q8WWZ4 1543 aa42.58■■■■■ 4.41
EFNA1-202ENST00000368407 RUSC2Q8N2Y8 1516 aa42.56■■■■■ 4.4
EFNA1-202ENST00000368407 FAM9AQ8IZU1 332 aaPredicted RBP42.51■■■■■ 4.4
EFNA1-202ENST00000368407 PCGF6Q9BYE7 350 aa42.5■■■■■ 4.39
EFNA1-202ENST00000368407 WDR97A6NE52 1622 aa42.49■■■■■ 4.39
EFNA1-202ENST00000368407 TDRD9Q8NDG6 1382 aaKnown RBP42.48■■■■■ 4.39
EFNA1-202ENST00000368407 ZNF608Q9ULD9 1512 aaPredicted RBP42.44■■■■■ 4.38
EFNA1-202ENST00000368407 KIF27Q86VH2 1401 aa42.44■■■■■ 4.38
EFNA1-202ENST00000368407 AQRO60306 1485 aaKnown RBP eCLIP42.35■■■■■ 4.371e-11■■■■■ 43.1
EFNA1-202ENST00000368407 EEA1Q15075 1411 aa42.31■■■■■ 4.36
EFNA1-202ENST00000368407 ABCA5Q8WWZ7 1642 aa42.3■■■■■ 4.36
EFNA1-202ENST00000368407 GAPVD1Q14C86 1478 aa42.29■■■■■ 4.36
EFNA1-202ENST00000368407 EIF4G3O43432 1585 aaKnown RBP42.22■■■■■ 4.35
EFNA1-202ENST00000368407 CSRNP3Q8WYN3 585 aa42.22■■■■■ 4.35
EFNA1-202ENST00000368407 IGF1RP08069 1367 aa42.19■■■■■ 4.34
EFNA1-202ENST00000368407 GRIN2BQ13224 1484 aa42.09■■■■■ 4.33
EFNA1-202ENST00000368407 ERICH3Q5RHP9 1530 aa42.06■■■■■ 4.32
EFNA1-202ENST00000368407 PBRM1Q86U86 1689 aa42.05■■■■■ 4.32
EFNA1-202ENST00000368407 TRIM26Q12899 539 aaPredicted RBP41.98■■■■■ 4.31
EFNA1-202ENST00000368407 EHMT2Q96KQ7 1210 aa41.96■■■■■ 4.31
EFNA1-202ENST00000368407 CARMIL1Q5VZK9 1371 aa41.95■■■■■ 4.31
EFNA1-202ENST00000368407 SNAPC4Q5SXM2 1469 aa41.94■■■■■ 4.3
EFNA1-202ENST00000368407 PRXQ9BXM0 1461 aa41.94■■■■■ 4.3
EFNA1-202ENST00000368407 LOC105371045A0A1W2PR82 267 aa41.92■■■■■ 4.3
EFNA1-202ENST00000368407 CUL7Q14999 1698 aa41.86■■■■■ 4.29
EFNA1-202ENST00000368407 MAGI1Q96QZ7 1491 aaPredicted RBP41.82■■■■■ 4.29
EFNA1-202ENST00000368407 ADAMTS12P58397 1594 aa41.82■■■■■ 4.29
EFNA1-202ENST00000368407 RAPGEF2Q9Y4G8 1499 aa41.82■■■■■ 4.28
EFNA1-202ENST00000368407 KIF21BO75037 1637 aa41.81■■■■■ 4.28
EFNA1-202ENST00000368407 FHAD1B1AJZ9 1412 aa41.81■■■■■ 4.28
EFNA1-202ENST00000368407 PPARGC1BQ86YN6 1023 aaKnown RBP41.75■■■■■ 4.27
EFNA1-202ENST00000368407 GOLGA3Q08378 1498 aa41.71■■■■■ 4.27
EFNA1-202ENST00000368407 SYNJ2O15056 1496 aa41.69■■■■■ 4.26
EFNA1-202ENST00000368407 FBLN2P98095 1184 aa41.65■■■■■ 4.26
EFNA1-202ENST00000368407 CHMP7Q8WUX9 453 aaPredicted RBP41.65■■■■■ 4.26
EFNA1-202ENST00000368407 UBTFP17480 764 aaKnown RBP41.6■■■■■ 4.25
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms