RNA–Protein interactions for RNA: ENST00000415548.1

CCT3-208, Transcript of chaperonin containing TCP1 subunit 3, humanhuman

TSL 3

Gene CCT3, Length 513 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCT3-208ENST00000415548 NISCHQ9Y2I1 1504 aa20.53■□□□□ 0.88
CCT3-208ENST00000415548 CCDC180Q9P1Z9 1646 aa18.27■□□□□ 0.52
CCT3-208ENST00000415548 ABCC9O60706 1549 aa18.01■□□□□ 0.47
CCT3-208ENST00000415548 AEBP2Q6ZN18 517 aaPredicted RBP17.81■□□□□ 0.44
CCT3-208ENST00000415548 RB1CC1Q8TDY2 1594 aa17.25■□□□□ 0.35
CCT3-208ENST00000415548 DCAF8L2P0C7V8 631 aa17.22■□□□□ 0.35
CCT3-208ENST00000415548 NACADO15069 1562 aa17.2■□□□□ 0.34
CCT3-208ENST00000415548 ZCCHC6Q5VYS8 1495 aaKnown RBP17.08■□□□□ 0.32
CCT3-208ENST00000415548 MYO15BQ96JP2 1530 aa17.05■□□□□ 0.32
CCT3-208ENST00000415548 DCAF1Q9Y4B6 1507 aa16.96■□□□□ 0.3
CCT3-208ENST00000415548 CHIC1Q5VXU3 224 aa16.95■□□□□ 0.3
CCT3-208ENST00000415548 UNC13AQ9UPW8 1703 aa16.88■□□□□ 0.29
CCT3-208ENST00000415548 PABPN1Q86U42 306 aaKnown RBP eCLIP16.82■□□□□ 0.28
CCT3-208ENST00000415548 BICRAQ9NZM4 1560 aa16.75■□□□□ 0.27
CCT3-208ENST00000415548 SCRIBQ14160 1630 aa16.7■□□□□ 0.26
CCT3-208ENST00000415548 DNAJC5BQ9UF47 199 aa16.62■□□□□ 0.25
CCT3-208ENST00000415548 SHROOM4Q9ULL8 1493 aa16.52■□□□□ 0.23
CCT3-208ENST00000415548 EIF4G1Q04637 1599 aaKnown RBP16.31■□□□□ 0.2
CCT3-208ENST00000415548 CC2D2AQ9P2K1 1620 aa16.27■□□□□ 0.19
CCT3-208ENST00000415548 CECR2Q9BXF3 1484 aa16.17■□□□□ 0.18
CCT3-208ENST00000415548 SMARCA4P51532 1647 aa15.95■□□□□ 0.14
CCT3-208ENST00000415548 BAZ1AQ9NRL2 1556 aaPredicted RBP15.91■□□□□ 0.14
CCT3-208ENST00000415548 ATAD2BQ9ULI0 1458 aa15.89■□□□□ 0.13
CCT3-208ENST00000415548 NCAPD3P42695 1498 aa15.88■□□□□ 0.13
CCT3-208ENST00000415548 SMARCA2P51531 1590 aa15.85■□□□□ 0.13
CCT3-208ENST00000415548 MROH2BQ7Z745 1585 aa15.83■□□□□ 0.13
CCT3-208ENST00000415548 HMGXB3Q12766 1538 aa15.78■□□□□ 0.12
CCT3-208ENST00000415548 PEG3Q9GZU2 1588 aa15.78■□□□□ 0.12
CCT3-208ENST00000415548 BAZ1BQ9UIG0 1483 aaKnown RBP15.75■□□□□ 0.11
CCT3-208ENST00000415548 WIZO95785 1651 aa15.66■□□□□ 0.1
CCT3-208ENST00000415548 RSF1Q96T23 1441 aaPredicted RBP15.62■□□□□ 0.09
CCT3-208ENST00000415548 NESP48681 1621 aa15.56■□□□□ 0.08
CCT3-208ENST00000415548 ERCC6Q03468 1493 aa15.51■□□□□ 0.07
CCT3-208ENST00000415548 TOP2AP11388 1531 aaKnown RBP15.48■□□□□ 0.07
CCT3-208ENST00000415548 LAMC3Q9Y6N6 1575 aa15.47■□□□□ 0.07
CCT3-208ENST00000415548 CADPSQ9ULU8 1353 aa15.42■□□□□ 0.06
CCT3-208ENST00000415548 PDS5BQ9NTI5 1447 aa15.37■□□□□ 0.05
CCT3-208ENST00000415548 KIF21AQ7Z4S6 1674 aa15.37■□□□□ 0.05
CCT3-208ENST00000415548 CUX2O14529 1486 aa15.36■□□□□ 0.05
CCT3-208ENST00000415548 THOC2Q8NI27 1593 aaKnown RBP15.32■□□□□ 0.04
CCT3-208ENST00000415548 CCDC88BA6NC98 1476 aa15.3■□□□□ 0.04
CCT3-208ENST00000415548 CFTRP13569 1480 aa15.3■□□□□ 0.04
CCT3-208ENST00000415548 SENP3Q9H4L4 574 aaPredicted RBP15.3■□□□□ 0.04
CCT3-208ENST00000415548 FANCD2Q9BXW9 1451 aa15.25■□□□□ 0.03
CCT3-208ENST00000415548 MRC2Q9UBG0 1479 aa15.23■□□□□ 0.03
CCT3-208ENST00000415548 CEP164Q9UPV0 1460 aa15.23■□□□□ 0.03
CCT3-208ENST00000415548 WDR62O43379 1518 aa15.18■□□□□ 0.02
CCT3-208ENST00000415548 PRDM2Q13029 1718 aa15.17■□□□□ 0.02
CCT3-208ENST00000415548 SUPT5HO00267 1087 aaKnown RBP15.17■□□□□ 0.02
CCT3-208ENST00000415548 URB2Q14146 1524 aaKnown RBP15.12■□□□□ 0.01
CCT3-208ENST00000415548 PHF23Q9BUL5 403 aaPredicted RBP15.04■□□□□ -0
CCT3-208ENST00000415548 DNAJC5Q9H3Z4 198 aa15.01□□□□□ -0.01
CCT3-208ENST00000415548 TOPBP1Q92547 1522 aa15□□□□□ -0.01
CCT3-208ENST00000415548 ABCC8Q09428 1581 aa14.97□□□□□ -0.01
CCT3-208ENST00000415548 DNMBPQ6XZF7 1577 aa14.97□□□□□ -0.01
CCT3-208ENST00000415548 IFT140Q96RY7 1462 aa14.92□□□□□ -0.02
CCT3-208ENST00000415548 ZNF608Q9ULD9 1512 aaPredicted RBP14.88□□□□□ -0.03
CCT3-208ENST00000415548 POLA1P09884 1462 aaPredicted RBP14.86□□□□□ -0.03
CCT3-208ENST00000415548 CUX1P39880 1505 aa14.86□□□□□ -0.03
CCT3-208ENST00000415548 TARBP1Q13395 1621 aaKnown RBP14.84□□□□□ -0.03
CCT3-208ENST00000415548 FGD5Q6ZNL6 1462 aa14.82□□□□□ -0.04
CCT3-208ENST00000415548 RAD54L2Q9Y4B4 1467 aa14.82□□□□□ -0.04
CCT3-208ENST00000415548 EIF4G3O43432 1585 aaKnown RBP14.81□□□□□ -0.04
CCT3-208ENST00000415548 SOGA1O94964 1423 aa14.8□□□□□ -0.04
CCT3-208ENST00000415548 AQRO60306 1485 aaKnown RBP eCLIP14.78□□□□□ -0.045e-9■■■■□ 26.3
CCT3-208ENST00000415548 TDRD9Q8NDG6 1382 aaKnown RBP14.74□□□□□ -0.05
CCT3-208ENST00000415548 OSCARQ8IYS5 282 aa14.72□□□□□ -0.05
CCT3-208ENST00000415548 WRNQ14191 1432 aaPredicted RBP eCLIP14.72□□□□□ -0.05
CCT3-208ENST00000415548 SYNJ1O43426 1573 aa14.7□□□□□ -0.06
CCT3-208ENST00000415548 WDR97A6NE52 1622 aa14.69□□□□□ -0.06
CCT3-208ENST00000415548 TOP2BQ02880 1626 aa14.69□□□□□ -0.06
CCT3-208ENST00000415548 BIVM-ERCC5R4GMW8 1640 aa14.69□□□□□ -0.06
CCT3-208ENST00000415548 ABCA10Q8WWZ4 1543 aa14.66□□□□□ -0.06
CCT3-208ENST00000415548 CHD1O14646 1710 aa14.64□□□□□ -0.07
CCT3-208ENST00000415548 SNAPC4Q5SXM2 1469 aa14.63□□□□□ -0.07
CCT3-208ENST00000415548 GRIN2BQ13224 1484 aa14.63□□□□□ -0.07
CCT3-208ENST00000415548 GAPVD1Q14C86 1478 aa14.63□□□□□ -0.07
CCT3-208ENST00000415548 FBLN2P98095 1184 aa14.62□□□□□ -0.07
CCT3-208ENST00000415548 ABCA5Q8WWZ7 1642 aa14.61□□□□□ -0.07
CCT3-208ENST00000415548 PBRM1Q86U86 1689 aa14.6□□□□□ -0.07
CCT3-208ENST00000415548 MAGI1Q96QZ7 1491 aaPredicted RBP14.59□□□□□ -0.07
CCT3-208ENST00000415548 CHMP7Q8WUX9 453 aaPredicted RBP14.56□□□□□ -0.08
CCT3-208ENST00000415548 SYNJ2O15056 1496 aa14.55□□□□□ -0.08
CCT3-208ENST00000415548 TRIM41Q8WV44 630 aa14.51□□□□□ -0.09
CCT3-208ENST00000415548 RIMBP3CA6NJZ7 1639 aa14.51□□□□□ -0.09
CCT3-208ENST00000415548 RIMBP3BA6NNM3 1639 aa14.51□□□□□ -0.09
CCT3-208ENST00000415548 RIMBP3Q9UFD9 1639 aa14.51□□□□□ -0.09
CCT3-208ENST00000415548 ARHGEF11O15085 1522 aa14.49□□□□□ -0.09
CCT3-208ENST00000415548 ADAMTS12P58397 1594 aa14.48□□□□□ -0.09
CCT3-208ENST00000415548 ERICH3Q5RHP9 1530 aa14.47□□□□□ -0.09
CCT3-208ENST00000415548 CLASP1Q7Z460 1538 aa14.47□□□□□ -0.09
CCT3-208ENST00000415548 FHAD1B1AJZ9 1412 aa14.45□□□□□ -0.1
CCT3-208ENST00000415548 GRIN2AQ12879 1464 aa14.44□□□□□ -0.1
CCT3-208ENST00000415548 KIF27Q86VH2 1401 aa14.41□□□□□ -0.1
CCT3-208ENST00000415548 NUP160Q12769 1436 aa14.39□□□□□ -0.11
CCT3-208ENST00000415548 CEP170Q5SW79 1584 aa14.39□□□□□ -0.11
CCT3-208ENST00000415548 ARAP1Q96P48 1450 aa14.38□□□□□ -0.11
CCT3-208ENST00000415548 IGF1RP08069 1367 aa14.37□□□□□ -0.11
CCT3-208ENST00000415548 CYB5RLQ6IPT4 315 aa14.37□□□□□ -0.11
CCT3-208ENST00000415548 CUL7Q14999 1698 aa14.33□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms