RNA–Protein interactions for RNA: ENST00000474413.5

EFNA1-204, Transcript of ephrin A1, humanhuman

TSL 3

Gene EFNA1, Length 1,083 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
EFNA1-204ENST00000474413 NISCHQ9Y2I1 1504 aa44.45■■■■■ 4.71
EFNA1-204ENST00000474413 CCDC180Q9P1Z9 1646 aa39.62■■■■□ 3.93
EFNA1-204ENST00000474413 ABCC9O60706 1549 aa38.84■■■■□ 3.81
EFNA1-204ENST00000474413 RB1CC1Q8TDY2 1594 aa37.28■■■■□ 3.56
EFNA1-204ENST00000474413 NACADO15069 1562 aa37.21■■■■□ 3.55
EFNA1-204ENST00000474413 ZCCHC6Q5VYS8 1495 aaKnown RBP37.06■■■■□ 3.52
EFNA1-204ENST00000474413 MYO15BQ96JP2 1530 aa36.97■■■■□ 3.51
EFNA1-204ENST00000474413 DCAF8L2P0C7V8 631 aa36.88■■■■□ 3.49
EFNA1-204ENST00000474413 DCAF1Q9Y4B6 1507 aa36.78■■■■□ 3.48
EFNA1-204ENST00000474413 UNC13AQ9UPW8 1703 aa36.61■■■■□ 3.45
EFNA1-204ENST00000474413 BICRAQ9NZM4 1560 aa36.33■■■■□ 3.41
EFNA1-204ENST00000474413 PABPN1Q86U42 306 aaKnown RBP eCLIP36.2■■■■□ 3.39
EFNA1-204ENST00000474413 SCRIBQ14160 1630 aa36.14■■■■□ 3.38
EFNA1-204ENST00000474413 DNAJC5BQ9UF47 199 aa35.83■■■■□ 3.33
EFNA1-204ENST00000474413 SHROOM4Q9ULL8 1493 aa35.79■■■■□ 3.32
EFNA1-204ENST00000474413 EIF4G1Q04637 1599 aaKnown RBP35.29■■■■□ 3.24
EFNA1-204ENST00000474413 CC2D2AQ9P2K1 1620 aa35.17■■■■□ 3.22
EFNA1-204ENST00000474413 CECR2Q9BXF3 1484 aa34.9■■■■□ 3.18
EFNA1-204ENST00000474413 SMARCA4P51532 1647 aa34.56■■■■□ 3.12
EFNA1-204ENST00000474413 BAZ1AQ9NRL2 1556 aaPredicted RBP34.42■■■■□ 3.1
EFNA1-204ENST00000474413 ATAD2BQ9ULI0 1458 aa34.36■■■■□ 3.09
EFNA1-204ENST00000474413 NCAPD3P42695 1498 aa34.34■■■■□ 3.09
EFNA1-204ENST00000474413 MROH2BQ7Z745 1585 aa34.31■■■■□ 3.08
EFNA1-204ENST00000474413 SMARCA2P51531 1590 aa34.27■■■■□ 3.08
EFNA1-204ENST00000474413 PEG3Q9GZU2 1588 aa34.24■■■■□ 3.07
EFNA1-204ENST00000474413 HMGXB3Q12766 1538 aa34.21■■■■□ 3.07
EFNA1-204ENST00000474413 BAZ1BQ9UIG0 1483 aaKnown RBP34.02■■■■□ 3.04
EFNA1-204ENST00000474413 WIZO95785 1651 aa33.93■■■■□ 3.02
EFNA1-204ENST00000474413 RSF1Q96T23 1441 aaPredicted RBP33.8■■■■□ 3
EFNA1-204ENST00000474413 NESP48681 1621 aa33.64■■■□□ 2.98
EFNA1-204ENST00000474413 TOP2AP11388 1531 aaKnown RBP33.53■■■□□ 2.96
EFNA1-204ENST00000474413 LAMC3Q9Y6N6 1575 aa33.46■■■□□ 2.95
EFNA1-204ENST00000474413 ERCC6Q03468 1493 aa33.39■■■□□ 2.94
EFNA1-204ENST00000474413 CADPSQ9ULU8 1353 aa33.28■■■□□ 2.92
EFNA1-204ENST00000474413 KIF21AQ7Z4S6 1674 aa33.26■■■□□ 2.92
EFNA1-204ENST00000474413 THOC2Q8NI27 1593 aaKnown RBP33.23■■■□□ 2.91
EFNA1-204ENST00000474413 CUX2O14529 1486 aa33.17■■■□□ 2.9
EFNA1-204ENST00000474413 PDS5BQ9NTI5 1447 aa33.13■■■□□ 2.89
EFNA1-204ENST00000474413 CFTRP13569 1480 aa33.12■■■□□ 2.89
EFNA1-204ENST00000474413 CCDC88BA6NC98 1476 aa33.1■■■□□ 2.89
EFNA1-204ENST00000474413 FANCD2Q9BXW9 1451 aa32.94■■■□□ 2.86
EFNA1-204ENST00000474413 PRDM2Q13029 1718 aa32.92■■■□□ 2.86
EFNA1-204ENST00000474413 MRC2Q9UBG0 1479 aa32.91■■■□□ 2.86
EFNA1-204ENST00000474413 CEP164Q9UPV0 1460 aa32.9■■■□□ 2.86
EFNA1-204ENST00000474413 WDR62O43379 1518 aa32.87■■■□□ 2.85
EFNA1-204ENST00000474413 URB2Q14146 1524 aaKnown RBP32.72■■■□□ 2.83
EFNA1-204ENST00000474413 SUPT5HO00267 1087 aaKnown RBP32.63■■■□□ 2.81
EFNA1-204ENST00000474413 TOPBP1Q92547 1522 aa32.44■■■□□ 2.78
EFNA1-204ENST00000474413 DNMBPQ6XZF7 1577 aa32.39■■■□□ 2.78
EFNA1-204ENST00000474413 ABCC8Q09428 1581 aa32.28■■■□□ 2.76
EFNA1-204ENST00000474413 DNAJC5Q9H3Z4 198 aa32.25■■■□□ 2.75
EFNA1-204ENST00000474413 IFT140Q96RY7 1462 aa32.21■■■□□ 2.75
EFNA1-204ENST00000474413 CUX1P39880 1505 aa32.2■■■□□ 2.74
EFNA1-204ENST00000474413 ZNF608Q9ULD9 1512 aaPredicted RBP32.18■■■□□ 2.74
EFNA1-204ENST00000474413 TARBP1Q13395 1621 aaKnown RBP32.17■■■□□ 2.74
EFNA1-204ENST00000474413 POLA1P09884 1462 aaPredicted RBP32.16■■■□□ 2.74
EFNA1-204ENST00000474413 EIF4G3O43432 1585 aaKnown RBP32.07■■■□□ 2.72
EFNA1-204ENST00000474413 FGD5Q6ZNL6 1462 aa32.05■■■□□ 2.72
EFNA1-204ENST00000474413 RAD54L2Q9Y4B4 1467 aa32.02■■■□□ 2.72
EFNA1-204ENST00000474413 WDR97A6NE52 1622 aa31.93■■■□□ 2.7
EFNA1-204ENST00000474413 SOGA1O94964 1423 aa31.91■■■□□ 2.7
EFNA1-204ENST00000474413 AQRO60306 1485 aaKnown RBP eCLIP31.9■■■□□ 2.72e-11■■■■■ 43.7
EFNA1-204ENST00000474413 SYNJ1O43426 1573 aa31.9■■■□□ 2.7
EFNA1-204ENST00000474413 BIVM-ERCC5R4GMW8 1640 aa31.88■■■□□ 2.69
EFNA1-204ENST00000474413 TOP2BQ02880 1626 aa31.85■■■□□ 2.69
EFNA1-204ENST00000474413 WRNQ14191 1432 aaPredicted RBP eCLIP31.82■■■□□ 2.68
EFNA1-204ENST00000474413 TDRD9Q8NDG6 1382 aaKnown RBP31.79■■■□□ 2.68
EFNA1-204ENST00000474413 ABCA10Q8WWZ4 1543 aa31.72■■■□□ 2.67
EFNA1-204ENST00000474413 ABCA5Q8WWZ7 1642 aa31.71■■■□□ 2.67
EFNA1-204ENST00000474413 CHD1O14646 1710 aa31.69■■■□□ 2.66
EFNA1-204ENST00000474413 SNAPC4Q5SXM2 1469 aa31.64■■■□□ 2.66
EFNA1-204ENST00000474413 PBRM1Q86U86 1689 aa31.64■■■□□ 2.65
EFNA1-204ENST00000474413 OSCARQ8IYS5 282 aa31.6■■■□□ 2.65
EFNA1-204ENST00000474413 GRIN2BQ13224 1484 aa31.59■■■□□ 2.65
EFNA1-204ENST00000474413 GAPVD1Q14C86 1478 aa31.58■■■□□ 2.65
EFNA1-204ENST00000474413 MAGI1Q96QZ7 1491 aaPredicted RBP31.54■■■□□ 2.64
EFNA1-204ENST00000474413 SYNJ2O15056 1496 aa31.43■■■□□ 2.62
EFNA1-204ENST00000474413 ADAMTS12P58397 1594 aa31.39■■■□□ 2.62
EFNA1-204ENST00000474413 CLASP1Q7Z460 1538 aa31.36■■■□□ 2.61
EFNA1-204ENST00000474413 RIMBP3CA6NJZ7 1639 aa31.35■■■□□ 2.61
EFNA1-204ENST00000474413 RIMBP3BA6NNM3 1639 aa31.35■■■□□ 2.61
EFNA1-204ENST00000474413 RIMBP3Q9UFD9 1639 aa31.35■■■□□ 2.61
EFNA1-204ENST00000474413 FBLN2P98095 1184 aa31.35■■■□□ 2.61
EFNA1-204ENST00000474413 ERICH3Q5RHP9 1530 aa31.32■■■□□ 2.6
EFNA1-204ENST00000474413 ARHGEF11O15085 1522 aa31.31■■■□□ 2.6
EFNA1-204ENST00000474413 CHMP7Q8WUX9 453 aaPredicted RBP31.25■■■□□ 2.59
EFNA1-204ENST00000474413 GRIN2AQ12879 1464 aa31.24■■■□□ 2.59
EFNA1-204ENST00000474413 FHAD1B1AJZ9 1412 aa31.2■■■□□ 2.59
EFNA1-204ENST00000474413 CEP170Q5SW79 1584 aa31.17■■■□□ 2.58
EFNA1-204ENST00000474413 NUP160Q12769 1436 aa31.14■■■□□ 2.58
EFNA1-204ENST00000474413 KIF27Q86VH2 1401 aa31.1■■■□□ 2.57
EFNA1-204ENST00000474413 ARAP1Q96P48 1450 aa31.08■■■□□ 2.57
EFNA1-204ENST00000474413 TRIM41Q8WV44 630 aa31.06■■■□□ 2.56
EFNA1-204ENST00000474413 IGF1RP08069 1367 aa31.05■■■□□ 2.56
EFNA1-204ENST00000474413 CUL7Q14999 1698 aa31.03■■■□□ 2.56
EFNA1-204ENST00000474413 SHROOM2Q13796 1616 aa30.98■■■□□ 2.55
EFNA1-204ENST00000474413 RUSC2Q8N2Y8 1516 aa30.96■■■□□ 2.55
EFNA1-204ENST00000474413 ERCC6L2Q5T890 1561 aa30.95■■■□□ 2.54
EFNA1-204ENST00000474413 CYB5RLQ6IPT4 315 aa30.84■■■□□ 2.53
EFNA1-204ENST00000474413 CARMIL1Q5VZK9 1371 aa30.8■■■□□ 2.52
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms