RNA–Protein interactions for RNA: ENST00000461249.1

GPN1-206, Transcript of GPN-loop GTPase 1, humanhuman

TSL 1 (best)

Gene GPN1, Length 969 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPN1-206ENST00000461249 NISCHQ9Y2I1 1504 aa19.17■□□□□ 0.66
GPN1-206ENST00000461249 CHIC1Q5VXU3 224 aa19.12■□□□□ 0.65
GPN1-206ENST00000461249 AEBP2Q6ZN18 517 aaPredicted RBP18.85■□□□□ 0.61
GPN1-206ENST00000461249 PHF23Q9BUL5 403 aaPredicted RBP16.94■□□□□ 0.3
GPN1-206ENST00000461249 CCDC180Q9P1Z9 1646 aa16.92■□□□□ 0.3
GPN1-206ENST00000461249 ABCC9O60706 1549 aa16.45■□□□□ 0.22
GPN1-206ENST00000461249 DCAF8L2P0C7V8 631 aa16.04■□□□□ 0.16
GPN1-206ENST00000461249 ZCCHC6Q5VYS8 1495 aaKnown RBP15.99■□□□□ 0.15
GPN1-206ENST00000461249 NACADO15069 1562 aa15.9■□□□□ 0.14
GPN1-206ENST00000461249 RB1CC1Q8TDY2 1594 aa15.87■□□□□ 0.13
GPN1-206ENST00000461249 PLPPR3Q6T4P5 718 aa15.86■□□□□ 0.13
GPN1-206ENST00000461249 DCAF1Q9Y4B6 1507 aa15.84■□□□□ 0.13
GPN1-206ENST00000461249 MYO15BQ96JP2 1530 aa15.84■□□□□ 0.13
GPN1-206ENST00000461249 SENP3Q9H4L4 574 aaPredicted RBP15.78■□□□□ 0.12
GPN1-206ENST00000461249 UNC13AQ9UPW8 1703 aa15.51■□□□□ 0.07
GPN1-206ENST00000461249 SCRIBQ14160 1630 aa15.5■□□□□ 0.07
GPN1-206ENST00000461249 PABPN1Q86U42 306 aaKnown RBP eCLIP15.44■□□□□ 0.06
GPN1-206ENST00000461249 BICRAQ9NZM4 1560 aa15.39■□□□□ 0.05
GPN1-206ENST00000461249 SHROOM4Q9ULL8 1493 aa15.31■□□□□ 0.04
GPN1-206ENST00000461249 DNAJC5BQ9UF47 199 aa14.97□□□□□ -0.01
GPN1-206ENST00000461249 EIF4G1Q04637 1599 aaKnown RBP14.96□□□□□ -0.01
GPN1-206ENST00000461249 CECR2Q9BXF3 1484 aa14.94□□□□□ -0.02
GPN1-206ENST00000461249 ADRA2BP18089 450 aa14.92□□□□□ -0.02
GPN1-206ENST00000461249 CC2D2AQ9P2K1 1620 aa14.87□□□□□ -0.03
GPN1-206ENST00000461249 BAZ1AQ9NRL2 1556 aaPredicted RBP14.84□□□□□ -0.03
GPN1-206ENST00000461249 SMARCA4P51532 1647 aa14.83□□□□□ -0.04
GPN1-206ENST00000461249 MROH2BQ7Z745 1585 aa14.79□□□□□ -0.04
GPN1-206ENST00000461249 ATAD2BQ9ULI0 1458 aa14.72□□□□□ -0.05
GPN1-206ENST00000461249 KCNA4P22459 653 aa14.71□□□□□ -0.05
GPN1-206ENST00000461249 EHMT2Q96KQ7 1210 aa14.71□□□□□ -0.05
GPN1-206ENST00000461249 PPP6R1Q9UPN7 881 aa14.71□□□□□ -0.05
GPN1-206ENST00000461249 SMARCA2P51531 1590 aa14.69□□□□□ -0.06
GPN1-206ENST00000461249 RSF1Q96T23 1441 aaPredicted RBP14.69□□□□□ -0.06
GPN1-206ENST00000461249 NCAPD3P42695 1498 aa14.69□□□□□ -0.06
GPN1-206ENST00000461249 PEG3Q9GZU2 1588 aa14.66□□□□□ -0.06
GPN1-206ENST00000461249 WIZO95785 1651 aa14.64□□□□□ -0.07
GPN1-206ENST00000461249 FOXD1Q16676 465 aa14.62□□□□□ -0.07
GPN1-206ENST00000461249 BAZ1BQ9UIG0 1483 aaKnown RBP14.6□□□□□ -0.07
GPN1-206ENST00000461249 HMGXB3Q12766 1538 aa14.59□□□□□ -0.07
GPN1-206ENST00000461249 SUPT5HO00267 1087 aaKnown RBP14.52□□□□□ -0.09
GPN1-206ENST00000461249 TOP2AP11388 1531 aaKnown RBP14.47□□□□□ -0.09
GPN1-206ENST00000461249 CCDC88BA6NC98 1476 aa14.34□□□□□ -0.11
GPN1-206ENST00000461249 NESP48681 1621 aa14.29□□□□□ -0.12
GPN1-206ENST00000461249 CADPSQ9ULU8 1353 aa14.28□□□□□ -0.12
GPN1-206ENST00000461249 LAMC3Q9Y6N6 1575 aa14.24□□□□□ -0.13
GPN1-206ENST00000461249 CFTRP13569 1480 aa14.21□□□□□ -0.13
GPN1-206ENST00000461249 PDS5BQ9NTI5 1447 aa14.17□□□□□ -0.14
GPN1-206ENST00000461249 ERCC6Q03468 1493 aa14.16□□□□□ -0.14
GPN1-206ENST00000461249 SLC4A1APQ9BWU0 796 aaKnown RBP14.12□□□□□ -0.15
GPN1-206ENST00000461249 PPP4R3CPQ6ZMV5 832 aa14.11□□□□□ -0.15
GPN1-206ENST00000461249 CSRNP3Q8WYN3 585 aa14.11□□□□□ -0.15
GPN1-206ENST00000461249 FANCD2Q9BXW9 1451 aa14.1□□□□□ -0.15
GPN1-206ENST00000461249 KIF21AQ7Z4S6 1674 aa14.1□□□□□ -0.15
GPN1-206ENST00000461249 PRDM2Q13029 1718 aa14.09□□□□□ -0.15
GPN1-206ENST00000461249 CEP164Q9UPV0 1460 aa14.06□□□□□ -0.16
GPN1-206ENST00000461249 MRC2Q9UBG0 1479 aa14□□□□□ -0.17
GPN1-206ENST00000461249 THOC2Q8NI27 1593 aaKnown RBP13.99□□□□□ -0.17
GPN1-206ENST00000461249 PIAS4Q8N2W9 510 aaPredicted RBP13.98□□□□□ -0.17
GPN1-206ENST00000461249 URB2Q14146 1524 aaKnown RBP13.95□□□□□ -0.18
GPN1-206ENST00000461249 WDR62O43379 1518 aa13.94□□□□□ -0.18
GPN1-206ENST00000461249 CUX2O14529 1486 aa13.92□□□□□ -0.18
GPN1-206ENST00000461249 NCBP3Q53F19 620 aaKnown RBP13.91□□□□□ -0.18
GPN1-206ENST00000461249 ABCC8Q09428 1581 aa13.9□□□□□ -0.18
GPN1-206ENST00000461249 TOPBP1Q92547 1522 aa13.9□□□□□ -0.19
GPN1-206ENST00000461249 DNMBPQ6XZF7 1577 aa13.88□□□□□ -0.19
GPN1-206ENST00000461249 CUX1P39880 1505 aa13.86□□□□□ -0.19
GPN1-206ENST00000461249 WRNQ14191 1432 aaPredicted RBP eCLIP13.84□□□□□ -0.19
GPN1-206ENST00000461249 FGD5Q6ZNL6 1462 aa13.79□□□□□ -0.2
GPN1-206ENST00000461249 SYNJ1O43426 1573 aa13.79□□□□□ -0.2
GPN1-206ENST00000461249 NPM3O75607 178 aaKnown RBP13.78□□□□□ -0.2
GPN1-206ENST00000461249 POLA1P09884 1462 aaPredicted RBP13.78□□□□□ -0.2
GPN1-206ENST00000461249 TOP2BQ02880 1626 aa13.77□□□□□ -0.21
GPN1-206ENST00000461249 BIVM-ERCC5R4GMW8 1640 aa13.76□□□□□ -0.21
GPN1-206ENST00000461249 IFT140Q96RY7 1462 aa13.76□□□□□ -0.21
GPN1-206ENST00000461249 SOGA1O94964 1423 aa13.76□□□□□ -0.21
GPN1-206ENST00000461249 RAD54L2Q9Y4B4 1467 aa13.75□□□□□ -0.21
GPN1-206ENST00000461249 TARBP1Q13395 1621 aaKnown RBP13.72□□□□□ -0.21
GPN1-206ENST00000461249 TRIM41Q8WV44 630 aa13.7□□□□□ -0.22
GPN1-206ENST00000461249 ZNF608Q9ULD9 1512 aaPredicted RBP13.69□□□□□ -0.22
GPN1-206ENST00000461249 TDRD9Q8NDG6 1382 aaKnown RBP13.67□□□□□ -0.22
GPN1-206ENST00000461249 AQRO60306 1485 aaKnown RBP eCLIP13.66□□□□□ -0.22
GPN1-206ENST00000461249 ABCA10Q8WWZ4 1543 aa13.65□□□□□ -0.22
GPN1-206ENST00000461249 WDR97A6NE52 1622 aa13.63□□□□□ -0.23
GPN1-206ENST00000461249 EIF4G3O43432 1585 aaKnown RBP13.61□□□□□ -0.23
GPN1-206ENST00000461249 GAPVD1Q14C86 1478 aa13.59□□□□□ -0.23
GPN1-206ENST00000461249 ZBTB22O15209 634 aa13.57□□□□□ -0.24
GPN1-206ENST00000461249 ABCA5Q8WWZ7 1642 aa13.56□□□□□ -0.24
GPN1-206ENST00000461249 GRIN2BQ13224 1484 aa13.55□□□□□ -0.24
GPN1-206ENST00000461249 KIF27Q86VH2 1401 aa13.55□□□□□ -0.24
GPN1-206ENST00000461249 PBRM1Q86U86 1689 aa13.52□□□□□ -0.25
GPN1-206ENST00000461249 SNAPC4Q5SXM2 1469 aa13.51□□□□□ -0.25
GPN1-206ENST00000461249 RUSC2Q8N2Y8 1516 aa13.5□□□□□ -0.25
GPN1-206ENST00000461249 IGF1RP08069 1367 aa13.49□□□□□ -0.25
GPN1-206ENST00000461249 FBLN2P98095 1184 aa13.49□□□□□ -0.25
GPN1-206ENST00000461249 CNKSR2Q8WXI2 1034 aa13.49□□□□□ -0.25
GPN1-206ENST00000461249 ERICH3Q5RHP9 1530 aa13.49□□□□□ -0.25
GPN1-206ENST00000461249 MAGI1Q96QZ7 1491 aaPredicted RBP13.48□□□□□ -0.25
GPN1-206ENST00000461249 CHMP7Q8WUX9 453 aaPredicted RBP13.47□□□□□ -0.25
GPN1-206ENST00000461249 SYNJ2O15056 1496 aa13.44□□□□□ -0.26
GPN1-206ENST00000461249 OSCARQ8IYS5 282 aa13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 118.1 ms