Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 RNF213-209ENST00000559864 594 ntTSL 313.25□□□□□ -0.291e-6■□□□□ 8.8
YBX3P16989 CDC123-204ENST00000440613 685 ntTSL 512.03□□□□□ -0.481e-6■□□□□ 8.8
YBX3P16989 NDUFS1-209ENST00000457011 2171 ntTSL 2 BASIC11.96□□□□□ -0.51e-6■□□□□ 8.8
YBX3P16989 NDUFS1-202ENST00000423725 2631 ntTSL 2 BASIC9.87□□□□□ -0.831e-6■□□□□ 8.8
YBX3P16989 NDUFS1-204ENST00000440274 2394 ntTSL 2 BASIC7.93□□□□□ -1.141e-6■□□□□ 8.8
YBX3P16989 NDUFS1-207ENST00000455934 3361 ntTSL 2 BASIC7.02□□□□□ -1.291e-6■□□□□ 8.8
YBX3P16989 NDUFS1-201ENST00000233190 11819 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.321e-6■□□□□ 8.8
YBX3P16989 DLEU1_2.1-201ENST00000617920 342 ntBASIC6.27□□□□□ -1.411e-6■□□□□ 8.8
YBX3P16989 STAT5A-204ENST00000469124 562 ntTSL 227.4■■□□□ 1.982e-6■□□□□ 8.8
YBX3P16989 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC27.27■■□□□ 1.962e-8■□□□□ 8.8
YBX3P16989 TMBIM1-221ENST00000476429 462 ntTSL 325.01■■□□□ 1.591e-12■□□□□ 8.8
YBX3P16989 SGMS1-204ENST00000492601 625 ntTSL 1 (best)23.34■■□□□ 1.332e-8■□□□□ 8.8
YBX3P16989 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC21.9■■□□□ 1.12e-8■□□□□ 8.8
YBX3P16989 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC21.87■■□□□ 1.092e-8■□□□□ 8.8
YBX3P16989 CALM1-206ENST00000553630 1420 ntTSL 521.47■■□□□ 1.031e-6■□□□□ 8.8
YBX3P16989 CALM1-216ENST00000626705 1341 ntTSL 5 BASIC21.31■■□□□ 11e-6■□□□□ 8.8
YBX3P16989 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC20.75■□□□□ 0.912e-8■□□□□ 8.8
YBX3P16989 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC20.36■□□□□ 0.852e-8■□□□□ 8.8
YBX3P16989 STAT5A-205ENST00000478897 550 ntTSL 419.78■□□□□ 0.762e-6■□□□□ 8.8
YBX3P16989 TMBIM1-207ENST00000429501 677 ntTSL 516.89■□□□□ 0.291e-12■□□□□ 8.8
YBX3P16989 TMBIM1-220ENST00000466012 572 ntTSL 516.53■□□□□ 0.241e-12■□□□□ 8.8
YBX3P16989 TMBIM1-204ENST00000418569 589 ntTSL 315.59■□□□□ 0.091e-12■□□□□ 8.8
YBX3P16989 TMBIM1-206ENST00000425694 569 ntTSL 215.59■□□□□ 0.091e-12■□□□□ 8.8
YBX3P16989 TMBIM1-210ENST00000439306 631 ntTSL 515.44■□□□□ 0.061e-12■□□□□ 8.8
YBX3P16989 PNP-204ENST00000554056 1635 ntTSL 514.69□□□□□ -0.062e-8■□□□□ 8.8
YBX3P16989 PAAF1-214ENST00000544552 1612 ntTSL 1 (best) BASIC14.63□□□□□ -0.072e-8■□□□□ 8.8
YBX3P16989 PNP-201ENST00000361505 1509 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.12e-8■□□□□ 8.8
YBX3P16989 PCID2-201ENST00000246505 1786 ntTSL 2 BASIC14.38□□□□□ -0.112e-8■□□□□ 8.8
YBX3P16989 PAAF1-201ENST00000310571 4994 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.142e-8■□□□□ 8.8
YBX3P16989 PCID2-216ENST00000622406 1937 ntTSL 5 BASIC14.02□□□□□ -0.162e-8■□□□□ 8.8
YBX3P16989 TMBIM1-223ENST00000495113 596 ntTSL 213.94□□□□□ -0.181e-12■□□□□ 8.8
YBX3P16989 PCID2-205ENST00000375477 1654 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.22e-8■□□□□ 8.8
YBX3P16989 PAAF1-210ENST00000541951 1383 ntTSL 2 BASIC13.83□□□□□ -0.22e-8■□□□□ 8.8
YBX3P16989 CALM1-201ENST00000356978 4242 ntAPPRIS P2 TSL 1 (best) BASIC12.73□□□□□ -0.371e-6■□□□□ 8.8
YBX3P16989 PAAF1-215ENST00000544909 1802 ntTSL 1 (best) BASIC12.69□□□□□ -0.382e-8■□□□□ 8.8
YBX3P16989 PCID2-204ENST00000375459 1668 ntTSL 2 BASIC12.59□□□□□ -0.392e-8■□□□□ 8.8
YBX3P16989 PCID2-210ENST00000473462 859 ntTSL 512.2□□□□□ -0.462e-8■□□□□ 8.8
YBX3P16989 PCID2-206ENST00000375479 1671 ntAPPRIS P1 TSL 2 BASIC12.1□□□□□ -0.472e-8■□□□□ 8.8
YBX3P16989 TMBIM1-222ENST00000492966 400 ntTSL 411.71□□□□□ -0.531e-12■□□□□ 8.8
YBX3P16989 PCID2-213ENST00000484641 800 ntTSL 511.21□□□□□ -0.612e-8■□□□□ 8.8
YBX3P16989 SGMS1-211ENST00000626236 1013 ntTSL 1 (best)10.47□□□□□ -0.732e-8■□□□□ 8.8
YBX3P16989 SGMS1-201ENST00000361543 1096 ntTSL 1 (best) BASIC10.17□□□□□ -0.782e-8■□□□□ 8.8
YBX3P16989 IPO11-214ENST00000514647 584 ntTSL 29.91□□□□□ -0.822e-8■□□□□ 8.8
YBX3P16989 PNP-207ENST00000556754 2573 ntTSL 29.61□□□□□ -0.872e-8■□□□□ 8.8
YBX3P16989 PAAF1-202ENST00000376384 1500 ntTSL 5 BASIC9.41□□□□□ -0.92e-8■□□□□ 8.8
YBX3P16989 IPO11-208ENST00000506200 554 ntTSL 49.22□□□□□ -0.932e-8■□□□□ 8.8
YBX3P16989 TBC1D23-204ENST00000471273 2304 ntTSL 28.98□□□□□ -0.972e-8■□□□□ 8.8
YBX3P16989 WNK1-213ENST00000542424 912 ntTSL 27.49□□□□□ -1.212e-8■□□□□ 8.8
YBX3P16989 PCID2-215ENST00000493650 4202 ntTSL 26.03□□□□□ -1.442e-8■□□□□ 8.8
YBX3P16989 PCID2-211ENST00000475433 776 ntTSL 55.78□□□□□ -1.482e-8■□□□□ 8.8
YBX3P16989 PCID2-212ENST00000480971 701 ntTSL 54.5□□□□□ -1.692e-8■□□□□ 8.8
YBX3P16989 RPL4-208ENST00000564744 671 ntTSL 210.68□□□□□ -0.72e-54■□□□□ 8.8
YBX3P16989 DLK1-203ENST00000392848 555 ntTSL 420.47■□□□□ 0.876e-9■□□□□ 8.8
YBX3P16989 DLK1-205ENST00000556051 469 ntTSL 2 BASIC17.63■□□□□ 0.416e-9■□□□□ 8.8
YBX3P16989 BLVRB-203ENST00000597870 1392 ntTSL 523.72■■□□□ 1.396e-22■□□□□ 8.8
YBX3P16989 BLVRB-201ENST00000263368 873 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.956e-22■□□□□ 8.8
YBX3P16989 BLVRB-202ENST00000595483 649 ntTSL 2 BASIC16.47■□□□□ 0.236e-22■□□□□ 8.8
YBX3P16989 PRKDC-203ENST00000432581 583 ntTSL 220.6■□□□□ 0.896e-24■□□□□ 8.8
YBX3P16989 PPME1-208ENST00000543525 1928 ntTSL 1 (best)14.72□□□□□ -0.051e-8■□□□□ 8.8
YBX3P16989 PPME1-202ENST00000398427 2496 ntTSL 1 (best) BASIC14□□□□□ -0.171e-8■□□□□ 8.8
YBX3P16989 PPME1-201ENST00000328257 2677 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.341e-8■□□□□ 8.8
YBX3P16989 PPME1-205ENST00000539021 4055 ntTSL 28.76□□□□□ -1.011e-8■□□□□ 8.8
YBX3P16989 PPME1-206ENST00000541340 3618 ntTSL 1 (best)7.35□□□□□ -1.231e-8■□□□□ 8.8
YBX3P16989 ALDOA-218ENST00000566146 365 ntTSL 1 (best)12.34□□□□□ -0.431e-323■□□□□ 8.8
YBX3P16989 FSCN1-204ENST00000447103 713 ntTSL 426.48■■□□□ 1.839e-12■□□□□ 8.8
YBX3P16989 FSCN1-203ENST00000444748 580 ntTSL 325.89■■□□□ 1.749e-12■□□□□ 8.8
YBX3P16989 NAP1L1-201ENST00000261182 4441 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.142e-12■□□□□ 8.8
YBX3P16989 NAP1L1-227ENST00000618691 13505 ntAPPRIS P1 TSL 1 (best) BASIC6.66□□□□□ -1.342e-12■□□□□ 8.8
YBX3P16989 TMBIM6-222ENST00000550445 761 ntTSL 316.94■□□□□ 0.38e-12■□□□□ 8.8
YBX3P16989 TMBIM6-218ENST00000549445 759 ntTSL 315.5■□□□□ 0.078e-12■□□□□ 8.8
YBX3P16989 TMBIM6-208ENST00000547187 669 ntTSL 514.63□□□□□ -0.078e-12■□□□□ 8.8
YBX3P16989 TMBIM6-211ENST00000548201 582 ntTSL 412.16□□□□□ -0.468e-12■□□□□ 8.8
YBX3P16989 TMBIM6-225ENST00000552370 882 ntAPPRIS P3 TSL 5 BASIC12.16□□□□□ -0.468e-12■□□□□ 8.8
YBX3P16989 TMBIM6-216ENST00000549130 446 ntTSL 511.65□□□□□ -0.548e-12■□□□□ 8.8
YBX3P16989 TMBIM6-228ENST00000553022 540 ntTSL 211.65□□□□□ -0.548e-12■□□□□ 8.8
YBX3P16989 TMBIM6-220ENST00000549966 538 ntTSL 510.77□□□□□ -0.698e-12■□□□□ 8.8
YBX3P16989 TMBIM6-210ENST00000547832 640 ntTSL 310.14□□□□□ -0.798e-12■□□□□ 8.8
YBX3P16989 TMBIM6-206ENST00000546914 521 ntTSL 49.82□□□□□ -0.848e-12■□□□□ 8.8
YBX3P16989 TMBIM6-226ENST00000552635 574 ntTSL 49.8□□□□□ -0.848e-12■□□□□ 8.8
YBX3P16989 TMBIM6-204ENST00000546796 556 ntTSL 59.37□□□□□ -0.918e-12■□□□□ 8.8
YBX3P16989 ETFA-213ENST00000560309 633 ntTSL 327.76■■■□□ 2.033e-8■□□□□ 8.8
YBX3P16989 ETFA-207ENST00000559386 893 ntTSL 526.22■■□□□ 1.793e-8■□□□□ 8.8
YBX3P16989 ETFA-219ENST00000561092 461 ntTSL 323.84■■□□□ 1.413e-8■□□□□ 8.8
YBX3P16989 CKAP5-208ENST00000527333 498 ntTSL 510.76□□□□□ -0.693e-8■□□□□ 8.7
YBX3P16989 CKAP5-206ENST00000526876 570 ntTSL 59.24□□□□□ -0.933e-8■□□□□ 8.7
YBX3P16989 PCBP2-224ENST00000552980 527 ntTSL 34.99□□□□□ -1.612e-23■□□□□ 8.7
YBX3P16989 TMX2-206ENST00000528110 829 ntTSL 210.84□□□□□ -0.672e-9■□□□□ 8.7
YBX3P16989 TMX2-208ENST00000530114 663 ntTSL 310.1□□□□□ -0.792e-9■□□□□ 8.7
YBX3P16989 CTSD-209ENST00000637158 1200 ntTSL 525.21■■□□□ 1.631e-8■□□□□ 8.7
YBX3P16989 AC068580.4-204ENST00000427721 1007 ntTSL 221.35■■□□□ 1.011e-8■□□□□ 8.7
YBX3P16989 CARS-204ENST00000439280 1021 ntTSL 324.25■■□□□ 1.472e-10■□□□□ 8.7
YBX3P16989 EIF4G2-221ENST00000532082 1069 ntTSL 1 (best)15.51■□□□□ 0.072e-9■□□□□ 8.7
YBX3P16989 SCAF8-204ENST00000461219 677 ntTSL 526.62■■□□□ 1.853e-11■□□□□ 8.7
YBX3P16989 NDUFA11-203ENST00000591160 604 ntTSL 325.38■■□□□ 1.653e-11■□□□□ 8.7
YBX3P16989 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC16.98■□□□□ 0.313e-11■□□□□ 8.7
YBX3P16989 SCAF8-203ENST00000417268 4944 ntTSL 2 BASIC13.29□□□□□ -0.283e-11■□□□□ 8.7
YBX3P16989 SCAF8-202ENST00000367186 4908 ntTSL 2 BASIC10.67□□□□□ -0.73e-11■□□□□ 8.7
YBX3P16989 SGMS1-203ENST00000429490 3634 ntTSL 5 BASIC13.97□□□□□ -0.177e-7■□□□□ 8.7
YBX3P16989 SGMS1-202ENST00000361781 3744 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.197e-7■□□□□ 8.7
YBX3P16989 PKM-217ENST00000566809 560 ntTSL 425.02■■□□□ 1.66e-18■□□□□ 8.7
Retrieved 100 of 29,075 protein–RNA pairs in 307.1 ms