RNA–Protein interactions for RNA: ENST00000417268.3

SCAF8-203, Transcript of SR-related CTD associated factor 8, humanhuman

TSL 2 BASIC

Gene SCAF8, Length 4,944 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF8-203ENST00000417268 NISCHQ9Y2I1 1504 aa23.94■■□□□ 1.42
SCAF8-203ENST00000417268 DCAF8L2P0C7V8 631 aa23.11■■□□□ 1.29
SCAF8-203ENST00000417268 SHROOM4Q9ULL8 1493 aa21.65■■□□□ 1.06
SCAF8-203ENST00000417268 SUPT5HO00267 1087 aaKnown RBP21.6■■□□□ 1.05
SCAF8-203ENST00000417268 ABCC9O60706 1549 aa20.58■□□□□ 0.89
SCAF8-203ENST00000417268 EHMT2Q96KQ7 1210 aa20.39■□□□□ 0.86
SCAF8-203ENST00000417268 FAM9AQ8IZU1 332 aaPredicted RBP20.22■□□□□ 0.83
SCAF8-203ENST00000417268 TRIM41Q8WV44 630 aa20.19■□□□□ 0.82
SCAF8-203ENST00000417268 APLP2Q06481 763 aa20.1■□□□□ 0.81
SCAF8-203ENST00000417268 CCDC180Q9P1Z9 1646 aa20.08■□□□□ 0.81
SCAF8-203ENST00000417268 PABPN1Q86U42 306 aaKnown RBP eCLIP20.08■□□□□ 0.81
SCAF8-203ENST00000417268 PCGF6Q9BYE7 350 aa20■□□□□ 0.79
SCAF8-203ENST00000417268 PELP1Q8IZL8 1130 aaKnown RBP19.91■□□□□ 0.78
SCAF8-203ENST00000417268 ZCCHC6Q5VYS8 1495 aaKnown RBP19.85■□□□□ 0.77
SCAF8-203ENST00000417268 UBTFP17480 764 aaKnown RBP19.78■□□□□ 0.76
SCAF8-203ENST00000417268 RANGAP1P46060 587 aaPredicted RBP19.78■□□□□ 0.76
SCAF8-203ENST00000417268 ATP1B4Q9UN42 357 aaPredicted RBP19.6■□□□□ 0.73
SCAF8-203ENST00000417268 TTBK1Q5TCY1 1321 aaPredicted RBP19.59■□□□□ 0.73
SCAF8-203ENST00000417268 SCRIBQ14160 1630 aa19.57■□□□□ 0.72
SCAF8-203ENST00000417268 MYT1Q01538 1121 aa19.55■□□□□ 0.72
SCAF8-203ENST00000417268 CENPBP07199 599 aaPredicted RBP19.54■□□□□ 0.72
SCAF8-203ENST00000417268 CHIC1Q5VXU3 224 aa19.54■□□□□ 0.72
SCAF8-203ENST00000417268 RB1CC1Q8TDY2 1594 aa19.5■□□□□ 0.71
SCAF8-203ENST00000417268 ZEB1P37275 1124 aaPredicted RBP19.5■□□□□ 0.71
SCAF8-203ENST00000417268 HRCP23327 699 aa19.43■□□□□ 0.7
SCAF8-203ENST00000417268 NACADO15069 1562 aa19.41■□□□□ 0.7
SCAF8-203ENST00000417268 CCER1Q8TC90 406 aaPredicted RBP19.24■□□□□ 0.67
SCAF8-203ENST00000417268 LOC105371045A0A1W2PR82 267 aa19.21■□□□□ 0.67
SCAF8-203ENST00000417268 DCAF1Q9Y4B6 1507 aa19.2■□□□□ 0.66
SCAF8-203ENST00000417268 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.15■□□□□ 0.66
SCAF8-203ENST00000417268 HNRNPUL2Q1KMD3 747 aaKnown RBP19.15■□□□□ 0.66
SCAF8-203ENST00000417268 YTHDC1Q96MU7 727 aaKnown RBP19.09■□□□□ 0.65
SCAF8-203ENST00000417268 PPARGC1BQ86YN6 1023 aaKnown RBP19.08■□□□□ 0.65
SCAF8-203ENST00000417268 ERICH6Q7L0X2 663 aa19.08■□□□□ 0.64
SCAF8-203ENST00000417268 TRIM26Q12899 539 aaPredicted RBP19.03■□□□□ 0.64
SCAF8-203ENST00000417268 FBLN2P98095 1184 aa18.94■□□□□ 0.62
SCAF8-203ENST00000417268 RSF1Q96T23 1441 aaPredicted RBP18.91■□□□□ 0.62
SCAF8-203ENST00000417268 CSRNP3Q8WYN3 585 aa18.89■□□□□ 0.61
SCAF8-203ENST00000417268 MYT1LQ9UL68 1186 aa18.87■□□□□ 0.61
SCAF8-203ENST00000417268 ITGAEP38570 1179 aa18.86■□□□□ 0.61
SCAF8-203ENST00000417268 MYO15BQ96JP2 1530 aa18.84■□□□□ 0.61
SCAF8-203ENST00000417268 BAZ1BQ9UIG0 1483 aaKnown RBP18.8■□□□□ 0.6
SCAF8-203ENST00000417268 BAZ1AQ9NRL2 1556 aaPredicted RBP18.79■□□□□ 0.6
SCAF8-203ENST00000417268 NEFLP07196 543 aa18.76■□□□□ 0.59
SCAF8-203ENST00000417268 CECR2Q9BXF3 1484 aa18.7■□□□□ 0.58
SCAF8-203ENST00000417268 FAM50AQ14320 339 aaKnown RBP18.61■□□□□ 0.57
SCAF8-203ENST00000417268 P3H3Q8IVL6 736 aa18.6■□□□□ 0.57
SCAF8-203ENST00000417268 DIEXFQ68CQ4 756 aaKnown RBP18.52■□□□□ 0.56
SCAF8-203ENST00000417268 GTF3C3Q9Y5Q9 886 aa18.5■□□□□ 0.55
SCAF8-203ENST00000417268 WRNQ14191 1432 aaPredicted RBP eCLIP18.48■□□□□ 0.55
SCAF8-203ENST00000417268 CDK11AQ9UQ88 783 aaPredicted RBP18.48■□□□□ 0.55
SCAF8-203ENST00000417268 MROH2BQ7Z745 1585 aa18.47■□□□□ 0.55
SCAF8-203ENST00000417268 SMARCA2P51531 1590 aa18.45■□□□□ 0.54
SCAF8-203ENST00000417268 CHMP7Q8WUX9 453 aaPredicted RBP18.45■□□□□ 0.54
SCAF8-203ENST00000417268 ARID3CA6NKF2 412 aa18.44■□□□□ 0.54
SCAF8-203ENST00000417268 EEA1Q15075 1411 aa18.4■□□□□ 0.54
SCAF8-203ENST00000417268 ERCC6Q03468 1493 aa18.39■□□□□ 0.54
SCAF8-203ENST00000417268 TRIM52Q96A61 297 aa18.39■□□□□ 0.53
SCAF8-203ENST00000417268 NPM1P06748 294 aaKnown RBP eCLIP18.34■□□□□ 0.53
SCAF8-203ENST00000417268 KIF27Q86VH2 1401 aa18.32■□□□□ 0.52
SCAF8-203ENST00000417268 ACIN1Q9UKV3 1341 aaKnown RBP18.29■□□□□ 0.52
SCAF8-203ENST00000417268 CCDC88BA6NC98 1476 aa18.29■□□□□ 0.52
SCAF8-203ENST00000417268 ZNF777Q9ULD5 760 aaPredicted RBP18.26■□□□□ 0.51
SCAF8-203ENST00000417268 POLR3GLQ9BT43 218 aa18.24■□□□□ 0.51
SCAF8-203ENST00000417268 PDS5BQ9NTI5 1447 aa18.24■□□□□ 0.51
SCAF8-203ENST00000417268 ATAD2BQ9ULI0 1458 aa18.23■□□□□ 0.51
SCAF8-203ENST00000417268 TOP2AP11388 1531 aaKnown RBP18.21■□□□□ 0.5
SCAF8-203ENST00000417268 CLIP1P30622 1438 aa18.2■□□□□ 0.5
SCAF8-203ENST00000417268 GOLGA3Q08378 1498 aa18.2■□□□□ 0.5
SCAF8-203ENST00000417268 SMARCA4P51532 1647 aa18.17■□□□□ 0.5
SCAF8-203ENST00000417268 WIZO95785 1651 aa18.16■□□□□ 0.5
SCAF8-203ENST00000417268 CADPSQ9ULU8 1353 aa18.15■□□□□ 0.5
SCAF8-203ENST00000417268 NEUROD1Q13562 356 aa18.14■□□□□ 0.49
SCAF8-203ENST00000417268 CEP164Q9UPV0 1460 aa18.12■□□□□ 0.49
SCAF8-203ENST00000417268 MTUS2Q5JR59 1369 aa18.1■□□□□ 0.49
SCAF8-203ENST00000417268 CUX2O14529 1486 aa18.09■□□□□ 0.49
SCAF8-203ENST00000417268 BCANQ96GW7 911 aa18.07■□□□□ 0.48
SCAF8-203ENST00000417268 TNIKQ9UKE5 1360 aa18.05■□□□□ 0.48
SCAF8-203ENST00000417268 CEP162Q5TB80 1403 aa18.05■□□□□ 0.48
SCAF8-203ENST00000417268 SCAF1Q9H7N4 1312 aaKnown RBP18.05■□□□□ 0.48
SCAF8-203ENST00000417268 CARMIL1Q5VZK9 1371 aa18.04■□□□□ 0.48
SCAF8-203ENST00000417268 DAXXQ9UER7 740 aaPredicted RBP18.03■□□□□ 0.48
SCAF8-203ENST00000417268 RTL5Q5HYW3 569 aaPredicted RBP18.02■□□□□ 0.48
SCAF8-203ENST00000417268 PLEKHD1A6NEE1 506 aa18.01■□□□□ 0.47
SCAF8-203ENST00000417268 ZNF316A6NFI3 1004 aaPredicted RBP18■□□□□ 0.47
SCAF8-203ENST00000417268 SOGA1O94964 1423 aa18■□□□□ 0.47
SCAF8-203ENST00000417268 ZNF326Q5BKZ1 582 aaKnown RBP18■□□□□ 0.47
SCAF8-203ENST00000417268 SLC4A1APQ9BWU0 796 aaKnown RBP17.99■□□□□ 0.47
SCAF8-203ENST00000417268 TSPY4P0CV99 314 aa17.98■□□□□ 0.47
SCAF8-203ENST00000417268 TSPY10P0CW01 314 aa17.98■□□□□ 0.47
SCAF8-203ENST00000417268 ESF1Q9H501 851 aaKnown RBP17.98■□□□□ 0.47
SCAF8-203ENST00000417268 ABCC8Q09428 1581 aa17.97■□□□□ 0.47
SCAF8-203ENST00000417268 CNGB1Q14028 1251 aaPredicted RBP17.95■□□□□ 0.46
SCAF8-203ENST00000417268 NCAPD3P42695 1498 aa17.94■□□□□ 0.46
SCAF8-203ENST00000417268 TDRD9Q8NDG6 1382 aaKnown RBP17.93■□□□□ 0.46
SCAF8-203ENST00000417268 EIF4G1Q04637 1599 aaKnown RBP17.93■□□□□ 0.46
SCAF8-203ENST00000417268 KCNH8Q96L42 1107 aa17.91■□□□□ 0.46
SCAF8-203ENST00000417268 CHIC2Q9UKJ5 165 aa17.91■□□□□ 0.46
SCAF8-203ENST00000417268 FANCD2Q9BXW9 1451 aa17.86■□□□□ 0.45
SCAF8-203ENST00000417268 FHAD1B1AJZ9 1412 aa17.83■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms