RNA–Protein interactions for RNA: ENST00000637158.1

CTSD-209, Transcript of cathepsin D, humanhuman

TSL 5

Gene CTSD, Length 1,200 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTSD-209ENST00000637158 NISCHQ9Y2I1 1504 aa45.77■■■■■ 4.92
CTSD-209ENST00000637158 ABCC9O60706 1549 aa41.23■■■■■ 4.19
CTSD-209ENST00000637158 CCDC180Q9P1Z9 1646 aa41.12■■■■■ 4.17
CTSD-209ENST00000637158 RB1CC1Q8TDY2 1594 aa39.26■■■■□ 3.88
CTSD-209ENST00000637158 NACADO15069 1562 aa38.97■■■■□ 3.83
CTSD-209ENST00000637158 DNAJC5BQ9UF47 199 aa38.81■■■■□ 3.8
CTSD-209ENST00000637158 DCAF8L2P0C7V8 631 aa38.75■■■■□ 3.79
CTSD-209ENST00000637158 MYO15BQ96JP2 1530 aa38.43■■■■□ 3.74
CTSD-209ENST00000637158 PABPN1Q86U42 306 aaKnown RBP eCLIP38.4■■■■□ 3.74
CTSD-209ENST00000637158 UNC13AQ9UPW8 1703 aa38.21■■■■□ 3.71
CTSD-209ENST00000637158 BICRAQ9NZM4 1560 aa38.02■■■■□ 3.68
CTSD-209ENST00000637158 ZCCHC6Q5VYS8 1495 aaKnown RBP37.88■■■■□ 3.65
CTSD-209ENST00000637158 DCAF1Q9Y4B6 1507 aa37.85■■■■□ 3.65
CTSD-209ENST00000637158 SHROOM4Q9ULL8 1493 aa37.67■■■■□ 3.62
CTSD-209ENST00000637158 SCRIBQ14160 1630 aa37.39■■■■□ 3.58
CTSD-209ENST00000637158 CC2D2AQ9P2K1 1620 aa37.25■■■■□ 3.55
CTSD-209ENST00000637158 CECR2Q9BXF3 1484 aa37.22■■■■□ 3.55
CTSD-209ENST00000637158 EIF4G1Q04637 1599 aaKnown RBP37.16■■■■□ 3.54
CTSD-209ENST00000637158 NCAPD3P42695 1498 aa35.99■■■■□ 3.35
CTSD-209ENST00000637158 DNAJC5Q9H3Z4 198 aa35.87■■■■□ 3.33
CTSD-209ENST00000637158 ATAD2BQ9ULI0 1458 aa35.81■■■■□ 3.32
CTSD-209ENST00000637158 SMARCA2P51531 1590 aa35.74■■■■□ 3.31
CTSD-209ENST00000637158 CUX2O14529 1486 aa35.7■■■■□ 3.31
CTSD-209ENST00000637158 SMARCA4P51532 1647 aa35.69■■■■□ 3.3
CTSD-209ENST00000637158 ERCC6Q03468 1493 aa35.69■■■■□ 3.3
CTSD-209ENST00000637158 HMGXB3Q12766 1538 aa35.67■■■■□ 3.3
CTSD-209ENST00000637158 BAZ1AQ9NRL2 1556 aaPredicted RBP35.56■■■■□ 3.28
CTSD-209ENST00000637158 BAZ1BQ9UIG0 1483 aaKnown RBP35.48■■■■□ 3.27
CTSD-209ENST00000637158 PEG3Q9GZU2 1588 aa35.4■■■■□ 3.26
CTSD-209ENST00000637158 NESP48681 1621 aa35.35■■■■□ 3.25
CTSD-209ENST00000637158 MROH2BQ7Z745 1585 aa35.21■■■■□ 3.23
CTSD-209ENST00000637158 LAMC3Q9Y6N6 1575 aa35.18■■■■□ 3.22
CTSD-209ENST00000637158 PDS5BQ9NTI5 1447 aa35.05■■■■□ 3.2
CTSD-209ENST00000637158 THOC2Q8NI27 1593 aaKnown RBP35.02■■■■□ 3.2
CTSD-209ENST00000637158 CADPSQ9ULU8 1353 aa34.89■■■■□ 3.18
CTSD-209ENST00000637158 KIF21AQ7Z4S6 1674 aa34.86■■■■□ 3.17
CTSD-209ENST00000637158 WIZO95785 1651 aa34.74■■■■□ 3.15
CTSD-209ENST00000637158 MRC2Q9UBG0 1479 aa34.67■■■■□ 3.14
CTSD-209ENST00000637158 WDR62O43379 1518 aa34.57■■■■□ 3.12
CTSD-209ENST00000637158 CEP164Q9UPV0 1460 aa34.52■■■■□ 3.12
CTSD-209ENST00000637158 RSF1Q96T23 1441 aaPredicted RBP34.47■■■■□ 3.11
CTSD-209ENST00000637158 FANCD2Q9BXW9 1451 aa34.46■■■■□ 3.11
CTSD-209ENST00000637158 CFTRP13569 1480 aa34.44■■■■□ 3.1
CTSD-209ENST00000637158 TOP2AP11388 1531 aaKnown RBP34.36■■■■□ 3.09
CTSD-209ENST00000637158 TRIM41Q8WV44 630 aa34.18■■■■□ 3.06
CTSD-209ENST00000637158 URB2Q14146 1524 aaKnown RBP34.13■■■■□ 3.05
CTSD-209ENST00000637158 OSCARQ8IYS5 282 aa34.11■■■■□ 3.05
CTSD-209ENST00000637158 CCDC88BA6NC98 1476 aa33.98■■■■□ 3.03
CTSD-209ENST00000637158 PRDM2Q13029 1718 aa33.98■■■■□ 3.03
CTSD-209ENST00000637158 IFT140Q96RY7 1462 aa33.86■■■■□ 3.01
CTSD-209ENST00000637158 ABCC8Q09428 1581 aa33.81■■■■□ 3
CTSD-209ENST00000637158 TOPBP1Q92547 1522 aa33.76■■■■□ 3
CTSD-209ENST00000637158 ZNF608Q9ULD9 1512 aaPredicted RBP33.73■■■□□ 2.99
CTSD-209ENST00000637158 DNMBPQ6XZF7 1577 aa33.64■■■□□ 2.98
CTSD-209ENST00000637158 EIF4G3O43432 1585 aaKnown RBP33.53■■■□□ 2.96
CTSD-209ENST00000637158 RIMBP3CA6NJZ7 1639 aa33.52■■■□□ 2.96
CTSD-209ENST00000637158 RIMBP3BA6NNM3 1639 aa33.52■■■□□ 2.96
CTSD-209ENST00000637158 RIMBP3Q9UFD9 1639 aa33.52■■■□□ 2.96
CTSD-209ENST00000637158 TARBP1Q13395 1621 aaKnown RBP33.44■■■□□ 2.94
CTSD-209ENST00000637158 AQRO60306 1485 aaKnown RBP eCLIP33.44■■■□□ 2.948e-7■■■■□ 23.8
CTSD-209ENST00000637158 ARHGEF11O15085 1522 aa33.43■■■□□ 2.94
CTSD-209ENST00000637158 POLA1P09884 1462 aaPredicted RBP33.41■■■□□ 2.94
CTSD-209ENST00000637158 FBLN2P98095 1184 aa33.32■■■□□ 2.92
CTSD-209ENST00000637158 SOGA1O94964 1423 aa33.31■■■□□ 2.92
CTSD-209ENST00000637158 RAD54L2Q9Y4B4 1467 aa33.26■■■□□ 2.92
CTSD-209ENST00000637158 CHD1O14646 1710 aa33.26■■■□□ 2.92
CTSD-209ENST00000637158 CYB5RLQ6IPT4 315 aa33.26■■■□□ 2.91
CTSD-209ENST00000637158 TDRD9Q8NDG6 1382 aaKnown RBP33.22■■■□□ 2.91
CTSD-209ENST00000637158 WDR97A6NE52 1622 aa33.2■■■□□ 2.91
CTSD-209ENST00000637158 FGD5Q6ZNL6 1462 aa33.17■■■□□ 2.9
CTSD-209ENST00000637158 CUX1P39880 1505 aa33.09■■■□□ 2.89
CTSD-209ENST00000637158 CHMP7Q8WUX9 453 aaPredicted RBP33.09■■■□□ 2.89
CTSD-209ENST00000637158 SNAPC4Q5SXM2 1469 aa33.08■■■□□ 2.89
CTSD-209ENST00000637158 ARAP1Q96P48 1450 aa33.06■■■□□ 2.88
CTSD-209ENST00000637158 MAGI1Q96QZ7 1491 aaPredicted RBP33.06■■■□□ 2.88
CTSD-209ENST00000637158 GRIN2BQ13224 1484 aa33.04■■■□□ 2.88
CTSD-209ENST00000637158 SYNJ1O43426 1573 aa32.97■■■□□ 2.87
CTSD-209ENST00000637158 TRHP20396 242 aaPredicted RBP32.97■■■□□ 2.87
CTSD-209ENST00000637158 SYNJ2O15056 1496 aa32.94■■■□□ 2.86
CTSD-209ENST00000637158 CLASP1Q7Z460 1538 aa32.94■■■□□ 2.86
CTSD-209ENST00000637158 GAPVD1Q14C86 1478 aa32.89■■■□□ 2.86
CTSD-209ENST00000637158 SUPT5HO00267 1087 aaKnown RBP32.85■■■□□ 2.85
CTSD-209ENST00000637158 ABCA10Q8WWZ4 1543 aa32.82■■■□□ 2.85
CTSD-209ENST00000637158 PBRM1Q86U86 1689 aa32.78■■■□□ 2.84
CTSD-209ENST00000637158 ABCA5Q8WWZ7 1642 aa32.72■■■□□ 2.83
CTSD-209ENST00000637158 WRNQ14191 1432 aaPredicted RBP eCLIP32.71■■■□□ 2.83
CTSD-209ENST00000637158 GRIN2AQ12879 1464 aa32.58■■■□□ 2.81
CTSD-209ENST00000637158 TOP2BQ02880 1626 aa32.55■■■□□ 2.8
CTSD-209ENST00000637158 BIVM-ERCC5R4GMW8 1640 aa32.53■■■□□ 2.8
CTSD-209ENST00000637158 FHAD1B1AJZ9 1412 aa32.49■■■□□ 2.79
CTSD-209ENST00000637158 NUP160Q12769 1436 aa32.49■■■□□ 2.79
CTSD-209ENST00000637158 ADAMTS12P58397 1594 aa32.49■■■□□ 2.79
CTSD-209ENST00000637158 ERICH3Q5RHP9 1530 aa32.43■■■□□ 2.78
CTSD-209ENST00000637158 CEP170Q5SW79 1584 aa32.41■■■□□ 2.78
CTSD-209ENST00000637158 ERCC6L2Q5T890 1561 aa32.34■■■□□ 2.77
CTSD-209ENST00000637158 SHROOM2Q13796 1616 aa32.31■■■□□ 2.76
CTSD-209ENST00000637158 JPH4Q96JJ6 628 aa32.22■■■□□ 2.75
CTSD-209ENST00000637158 PRG4Q92954 1404 aaPredicted RBP32.19■■■□□ 2.74
CTSD-209ENST00000637158 AEBP2Q6ZN18 517 aaPredicted RBP32.16■■■□□ 2.74
CTSD-209ENST00000637158 RUSC2Q8N2Y8 1516 aa32.03■■■□□ 2.72
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms