RNA–Protein interactions for RNA: ENST00000492601.2

SGMS1-204, Transcript of sphingomyelin synthase 1, humanhuman

TSL 1 (best)

Gene SGMS1, Length 625 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SGMS1-204ENST00000492601 NISCHQ9Y2I1 1504 aa42.92■■■■■ 4.46
SGMS1-204ENST00000492601 CCDC180Q9P1Z9 1646 aa38.45■■■■□ 3.75
SGMS1-204ENST00000492601 ABCC9O60706 1549 aa38.22■■■■□ 3.71
SGMS1-204ENST00000492601 RB1CC1Q8TDY2 1594 aa36.47■■■■□ 3.43
SGMS1-204ENST00000492601 NACADO15069 1562 aa36.25■■■■□ 3.39
SGMS1-204ENST00000492601 DCAF8L2P0C7V8 631 aa36.18■■■■□ 3.38
SGMS1-204ENST00000492601 UNC13AQ9UPW8 1703 aa35.79■■■■□ 3.32
SGMS1-204ENST00000492601 MYO15BQ96JP2 1530 aa35.77■■■■□ 3.32
SGMS1-204ENST00000492601 DNAJC5BQ9UF47 199 aa35.62■■■■□ 3.29
SGMS1-204ENST00000492601 ZCCHC6Q5VYS8 1495 aaKnown RBP35.61■■■■□ 3.29
SGMS1-204ENST00000492601 PABPN1Q86U42 306 aaKnown RBP eCLIP35.61■■■■□ 3.29
SGMS1-204ENST00000492601 DCAF1Q9Y4B6 1507 aa35.42■■■■□ 3.26
SGMS1-204ENST00000492601 BICRAQ9NZM4 1560 aa35.41■■■■□ 3.26
SGMS1-204ENST00000492601 SCRIBQ14160 1630 aa35.1■■■■□ 3.21
SGMS1-204ENST00000492601 SHROOM4Q9ULL8 1493 aa34.86■■■■□ 3.17
SGMS1-204ENST00000492601 CC2D2AQ9P2K1 1620 aa34.55■■■■□ 3.12
SGMS1-204ENST00000492601 EIF4G1Q04637 1599 aaKnown RBP34.52■■■■□ 3.12
SGMS1-204ENST00000492601 CECR2Q9BXF3 1484 aa34.38■■■■□ 3.09
SGMS1-204ENST00000492601 SMARCA4P51532 1647 aa33.47■■■□□ 2.95
SGMS1-204ENST00000492601 NCAPD3P42695 1498 aa33.43■■■□□ 2.94
SGMS1-204ENST00000492601 ATAD2BQ9ULI0 1458 aa33.39■■■□□ 2.94
SGMS1-204ENST00000492601 SMARCA2P51531 1590 aa33.33■■■□□ 2.93
SGMS1-204ENST00000492601 BAZ1AQ9NRL2 1556 aaPredicted RBP33.3■■■□□ 2.92
SGMS1-204ENST00000492601 HMGXB3Q12766 1538 aa33.23■■■□□ 2.91
SGMS1-204ENST00000492601 BAZ1BQ9UIG0 1483 aaKnown RBP33.11■■■□□ 2.89
SGMS1-204ENST00000492601 MROH2BQ7Z745 1585 aa33.09■■■□□ 2.89
SGMS1-204ENST00000492601 PEG3Q9GZU2 1588 aa33.09■■■□□ 2.89
SGMS1-204ENST00000492601 ERCC6Q03468 1493 aa32.98■■■□□ 2.87
SGMS1-204ENST00000492601 NESP48681 1621 aa32.91■■■□□ 2.86
SGMS1-204ENST00000492601 CUX2O14529 1486 aa32.78■■■□□ 2.84
SGMS1-204ENST00000492601 WIZO95785 1651 aa32.78■■■□□ 2.84
SGMS1-204ENST00000492601 LAMC3Q9Y6N6 1575 aa32.69■■■□□ 2.82
SGMS1-204ENST00000492601 KIF21AQ7Z4S6 1674 aa32.58■■■□□ 2.81
SGMS1-204ENST00000492601 THOC2Q8NI27 1593 aaKnown RBP32.53■■■□□ 2.8
SGMS1-204ENST00000492601 DNAJC5Q9H3Z4 198 aa32.49■■■□□ 2.79
SGMS1-204ENST00000492601 RSF1Q96T23 1441 aaPredicted RBP32.46■■■□□ 2.79
SGMS1-204ENST00000492601 PDS5BQ9NTI5 1447 aa32.45■■■□□ 2.79
SGMS1-204ENST00000492601 CADPSQ9ULU8 1353 aa32.43■■■□□ 2.78
SGMS1-204ENST00000492601 TOP2AP11388 1531 aaKnown RBP32.31■■■□□ 2.76
SGMS1-204ENST00000492601 MRC2Q9UBG0 1479 aa32.19■■■□□ 2.74
SGMS1-204ENST00000492601 CFTRP13569 1480 aa32.11■■■□□ 2.73
SGMS1-204ENST00000492601 CEP164Q9UPV0 1460 aa32.11■■■□□ 2.73
SGMS1-204ENST00000492601 WDR62O43379 1518 aa32.1■■■□□ 2.73
SGMS1-204ENST00000492601 FANCD2Q9BXW9 1451 aa32.1■■■□□ 2.73
SGMS1-204ENST00000492601 PRDM2Q13029 1718 aa31.98■■■□□ 2.71
SGMS1-204ENST00000492601 CCDC88BA6NC98 1476 aa31.94■■■□□ 2.7
SGMS1-204ENST00000492601 URB2Q14146 1524 aaKnown RBP31.84■■■□□ 2.69
SGMS1-204ENST00000492601 TOPBP1Q92547 1522 aa31.54■■■□□ 2.64
SGMS1-204ENST00000492601 DNMBPQ6XZF7 1577 aa31.45■■■□□ 2.63
SGMS1-204ENST00000492601 IFT140Q96RY7 1462 aa31.45■■■□□ 2.62
SGMS1-204ENST00000492601 ABCC8Q09428 1581 aa31.43■■■□□ 2.62
SGMS1-204ENST00000492601 ZNF608Q9ULD9 1512 aaPredicted RBP31.41■■■□□ 2.62
SGMS1-204ENST00000492601 OSCARQ8IYS5 282 aa31.33■■■□□ 2.61
SGMS1-204ENST00000492601 EIF4G3O43432 1585 aaKnown RBP31.28■■■□□ 2.6
SGMS1-204ENST00000492601 SUPT5HO00267 1087 aaKnown RBP31.27■■■□□ 2.6
SGMS1-204ENST00000492601 TARBP1Q13395 1621 aaKnown RBP31.25■■■□□ 2.59
SGMS1-204ENST00000492601 TRIM41Q8WV44 630 aa31.25■■■□□ 2.59
SGMS1-204ENST00000492601 POLA1P09884 1462 aaPredicted RBP31.21■■■□□ 2.59
SGMS1-204ENST00000492601 AQRO60306 1485 aaKnown RBP eCLIP31.15■■■□□ 2.58
SGMS1-204ENST00000492601 RAD54L2Q9Y4B4 1467 aa31.13■■■□□ 2.57
SGMS1-204ENST00000492601 CUX1P39880 1505 aa31.08■■■□□ 2.57
SGMS1-204ENST00000492601 CHD1O14646 1710 aa31.07■■■□□ 2.56
SGMS1-204ENST00000492601 FGD5Q6ZNL6 1462 aa31.07■■■□□ 2.56
SGMS1-204ENST00000492601 SOGA1O94964 1423 aa31.07■■■□□ 2.56
SGMS1-204ENST00000492601 TDRD9Q8NDG6 1382 aaKnown RBP30.99■■■□□ 2.55
SGMS1-204ENST00000492601 RIMBP3CA6NJZ7 1639 aa30.98■■■□□ 2.55
SGMS1-204ENST00000492601 RIMBP3BA6NNM3 1639 aa30.98■■■□□ 2.55
SGMS1-204ENST00000492601 RIMBP3Q9UFD9 1639 aa30.98■■■□□ 2.55
SGMS1-204ENST00000492601 FBLN2P98095 1184 aa30.92■■■□□ 2.54
SGMS1-204ENST00000492601 WDR97A6NE52 1622 aa30.9■■■□□ 2.54
SGMS1-204ENST00000492601 ARHGEF11O15085 1522 aa30.87■■■□□ 2.53
SGMS1-204ENST00000492601 SNAPC4Q5SXM2 1469 aa30.84■■■□□ 2.53
SGMS1-204ENST00000492601 PBRM1Q86U86 1689 aa30.78■■■□□ 2.52
SGMS1-204ENST00000492601 GRIN2BQ13224 1484 aa30.76■■■□□ 2.52
SGMS1-204ENST00000492601 MAGI1Q96QZ7 1491 aaPredicted RBP30.74■■■□□ 2.51
SGMS1-204ENST00000492601 GAPVD1Q14C86 1478 aa30.7■■■□□ 2.51
SGMS1-204ENST00000492601 ABCA10Q8WWZ4 1543 aa30.7■■■□□ 2.51
SGMS1-204ENST00000492601 CHMP7Q8WUX9 453 aaPredicted RBP30.69■■■□□ 2.5
SGMS1-204ENST00000492601 ABCA5Q8WWZ7 1642 aa30.68■■■□□ 2.5
SGMS1-204ENST00000492601 BIVM-ERCC5R4GMW8 1640 aa30.68■■■□□ 2.5
SGMS1-204ENST00000492601 SYNJ1O43426 1573 aa30.66■■■□□ 2.5
SGMS1-204ENST00000492601 TOP2BQ02880 1626 aa30.65■■■□□ 2.5
SGMS1-204ENST00000492601 SYNJ2O15056 1496 aa30.64■■■□□ 2.5
SGMS1-204ENST00000492601 WRNQ14191 1432 aaPredicted RBP eCLIP30.64■■■□□ 2.49
SGMS1-204ENST00000492601 CYB5RLQ6IPT4 315 aa30.62■■■□□ 2.49
SGMS1-204ENST00000492601 CLASP1Q7Z460 1538 aa30.62■■■□□ 2.49
SGMS1-204ENST00000492601 ARAP1Q96P48 1450 aa30.57■■■□□ 2.48
SGMS1-204ENST00000492601 ADAMTS12P58397 1594 aa30.43■■■□□ 2.46
SGMS1-204ENST00000492601 GRIN2AQ12879 1464 aa30.38■■■□□ 2.45
SGMS1-204ENST00000492601 ERICH3Q5RHP9 1530 aa30.32■■■□□ 2.44
SGMS1-204ENST00000492601 FHAD1B1AJZ9 1412 aa30.3■■■□□ 2.44
SGMS1-204ENST00000492601 CEP170Q5SW79 1584 aa30.3■■■□□ 2.44
SGMS1-204ENST00000492601 NUP160Q12769 1436 aa30.24■■■□□ 2.43
SGMS1-204ENST00000492601 TRHP20396 242 aaPredicted RBP30.22■■■□□ 2.43
SGMS1-204ENST00000492601 ERCC6L2Q5T890 1561 aa30.2■■■□□ 2.43
SGMS1-204ENST00000492601 SHROOM2Q13796 1616 aa30.14■■■□□ 2.41
SGMS1-204ENST00000492601 KIF27Q86VH2 1401 aa30.03■■■□□ 2.4
SGMS1-204ENST00000492601 RUSC2Q8N2Y8 1516 aa30■■■□□ 2.39
SGMS1-204ENST00000492601 CUL7Q14999 1698 aa29.98■■■□□ 2.39
SGMS1-204ENST00000492601 IGF1RP08069 1367 aa29.98■■■□□ 2.39
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms