RNA–Protein interactions for RNA: ENST00000543525.3

PPME1-208, Transcript of protein phosphatase methylesterase 1, humanhuman

TSL 1 (best)

Gene PPME1, Length 1,928 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PPME1-208ENST00000543525 NISCHQ9Y2I1 1504 aa28.14■■■□□ 2.1
PPME1-208ENST00000543525 ABCC9O60706 1549 aa24.13■■□□□ 1.45
PPME1-208ENST00000543525 CCDC180Q9P1Z9 1646 aa24.06■■□□□ 1.44
PPME1-208ENST00000543525 ZCCHC6Q5VYS8 1495 aaKnown RBP23.81■■□□□ 1.4
PPME1-208ENST00000543525 SHROOM4Q9ULL8 1493 aa23.75■■□□□ 1.39
PPME1-208ENST00000543525 SUPT5HO00267 1087 aaKnown RBP23.3■■□□□ 1.32
PPME1-208ENST00000543525 DNAJC5BQ9UF47 199 aa23.23■■□□□ 1.31
PPME1-208ENST00000543525 DCAF1Q9Y4B6 1507 aa23.2■■□□□ 1.3
PPME1-208ENST00000543525 DCAF8L2P0C7V8 631 aa23.17■■□□□ 1.3
PPME1-208ENST00000543525 RB1CC1Q8TDY2 1594 aa22.71■■□□□ 1.23
PPME1-208ENST00000543525 CHIC1Q5VXU3 224 aa22.71■■□□□ 1.23
PPME1-208ENST00000543525 MYO15BQ96JP2 1530 aa22.58■■□□□ 1.2
PPME1-208ENST00000543525 NACADO15069 1562 aa22.42■■□□□ 1.18
PPME1-208ENST00000543525 PABPN1Q86U42 306 aaKnown RBP eCLIP22.39■■□□□ 1.18
PPME1-208ENST00000543525 SCRIBQ14160 1630 aa22.37■■□□□ 1.17
PPME1-208ENST00000543525 RSF1Q96T23 1441 aaPredicted RBP22.21■■□□□ 1.15
PPME1-208ENST00000543525 UNC13AQ9UPW8 1703 aa22.11■■□□□ 1.13
PPME1-208ENST00000543525 BICRAQ9NZM4 1560 aa22.07■■□□□ 1.12
PPME1-208ENST00000543525 HRCP23327 699 aa21.94■■□□□ 1.1
PPME1-208ENST00000543525 LOC105371045A0A1W2PR82 267 aa21.94■■□□□ 1.1
PPME1-208ENST00000543525 PCGF6Q9BYE7 350 aa21.88■■□□□ 1.09
PPME1-208ENST00000543525 CECR2Q9BXF3 1484 aa21.85■■□□□ 1.09
PPME1-208ENST00000543525 MROH2BQ7Z745 1585 aa21.81■■□□□ 1.08
PPME1-208ENST00000543525 TRIM41Q8WV44 630 aa21.8■■□□□ 1.08
PPME1-208ENST00000543525 DNAJC5Q9H3Z4 198 aa21.8■■□□□ 1.08
PPME1-208ENST00000543525 CC2D2AQ9P2K1 1620 aa21.76■■□□□ 1.07
PPME1-208ENST00000543525 WIZO95785 1651 aa21.69■■□□□ 1.06
PPME1-208ENST00000543525 BAZ1AQ9NRL2 1556 aaPredicted RBP21.65■■□□□ 1.06
PPME1-208ENST00000543525 TRIM26Q12899 539 aaPredicted RBP21.61■■□□□ 1.05
PPME1-208ENST00000543525 EIF4G1Q04637 1599 aaKnown RBP21.58■■□□□ 1.04
PPME1-208ENST00000543525 FAM9AQ8IZU1 332 aaPredicted RBP21.5■■□□□ 1.03
PPME1-208ENST00000543525 SMARCA4P51532 1647 aa21.45■■□□□ 1.02
PPME1-208ENST00000543525 TOP2AP11388 1531 aaKnown RBP21.45■■□□□ 1.02
PPME1-208ENST00000543525 PPARGC1BQ86YN6 1023 aaKnown RBP21.33■■□□□ 1
PPME1-208ENST00000543525 CCDC88BA6NC98 1476 aa21.29■■□□□ 1
PPME1-208ENST00000543525 SMARCA2P51531 1590 aa21.28■■□□□ 1
PPME1-208ENST00000543525 ZEB1P37275 1124 aaPredicted RBP21.22■□□□□ 0.99
PPME1-208ENST00000543525 EHMT2Q96KQ7 1210 aa21.22■□□□□ 0.99
PPME1-208ENST00000543525 ABCC8Q09428 1581 aa21.15■□□□□ 0.98
PPME1-208ENST00000543525 CUX2O14529 1486 aa21.1■□□□□ 0.97
PPME1-208ENST00000543525 PEG3Q9GZU2 1588 aa21.09■□□□□ 0.97
PPME1-208ENST00000543525 EEA1Q15075 1411 aa21.03■□□□□ 0.96
PPME1-208ENST00000543525 AEBP2Q6ZN18 517 aaPredicted RBP20.98■□□□□ 0.95
PPME1-208ENST00000543525 SOGA1O94964 1423 aa20.94■□□□□ 0.94
PPME1-208ENST00000543525 WRNQ14191 1432 aaPredicted RBP eCLIP20.92■□□□□ 0.94
PPME1-208ENST00000543525 TNIKQ9UKE5 1360 aa20.92■□□□□ 0.94
PPME1-208ENST00000543525 CSRNP3Q8WYN3 585 aa20.9■□□□□ 0.94
PPME1-208ENST00000543525 ATAD2BQ9ULI0 1458 aa20.89■□□□□ 0.93
PPME1-208ENST00000543525 ERCC6Q03468 1493 aa20.88■□□□□ 0.93
PPME1-208ENST00000543525 CEP162Q5TB80 1403 aa20.88■□□□□ 0.93
PPME1-208ENST00000543525 BAZ1BQ9UIG0 1483 aaKnown RBP20.85■□□□□ 0.93
PPME1-208ENST00000543525 RUSC2Q8N2Y8 1516 aa20.82■□□□□ 0.92
PPME1-208ENST00000543525 GOLGA3Q08378 1498 aa20.81■□□□□ 0.92
PPME1-208ENST00000543525 UBTFP17480 764 aaKnown RBP20.76■□□□□ 0.91
PPME1-208ENST00000543525 SYNJ1O43426 1573 aa20.75■□□□□ 0.91
PPME1-208ENST00000543525 NCAPD3P42695 1498 aa20.74■□□□□ 0.91
PPME1-208ENST00000543525 CEP164Q9UPV0 1460 aa20.7■□□□□ 0.9
PPME1-208ENST00000543525 KIF21BO75037 1637 aa20.69■□□□□ 0.9
PPME1-208ENST00000543525 CCER1Q8TC90 406 aaPredicted RBP20.65■□□□□ 0.9
PPME1-208ENST00000543525 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.63■□□□□ 0.89
PPME1-208ENST00000543525 TOP2BQ02880 1626 aa20.57■□□□□ 0.88
PPME1-208ENST00000543525 HMGXB3Q12766 1538 aa20.56■□□□□ 0.88
PPME1-208ENST00000543525 TTBK1Q5TCY1 1321 aaPredicted RBP20.55■□□□□ 0.88
PPME1-208ENST00000543525 NESP48681 1621 aa20.55■□□□□ 0.88
PPME1-208ENST00000543525 CLIP1P30622 1438 aa20.53■□□□□ 0.88
PPME1-208ENST00000543525 BIVM-ERCC5R4GMW8 1640 aa20.52■□□□□ 0.87
PPME1-208ENST00000543525 THOC2Q8NI27 1593 aaKnown RBP20.47■□□□□ 0.87
PPME1-208ENST00000543525 RAPGEF2Q9Y4G8 1499 aa20.46■□□□□ 0.87
PPME1-208ENST00000543525 VPS8Q8N3P4 1428 aa20.45■□□□□ 0.86
PPME1-208ENST00000543525 ERICH3Q5RHP9 1530 aa20.38■□□□□ 0.85
PPME1-208ENST00000543525 APLP2Q06481 763 aa20.37■□□□□ 0.85
PPME1-208ENST00000543525 CFTRP13569 1480 aa20.34■□□□□ 0.85
PPME1-208ENST00000543525 PRXQ9BXM0 1461 aa20.34■□□□□ 0.85
PPME1-208ENST00000543525 CUX1P39880 1505 aa20.33■□□□□ 0.84
PPME1-208ENST00000543525 LAMC3Q9Y6N6 1575 aa20.32■□□□□ 0.84
PPME1-208ENST00000543525 KIF27Q86VH2 1401 aa20.28■□□□□ 0.84
PPME1-208ENST00000543525 PDS5BQ9NTI5 1447 aa20.26■□□□□ 0.83
PPME1-208ENST00000543525 PRDM2Q13029 1718 aa20.23■□□□□ 0.83
PPME1-208ENST00000543525 RANGAP1P46060 587 aaPredicted RBP20.23■□□□□ 0.83
PPME1-208ENST00000543525 HNRNPUL2Q1KMD3 747 aaKnown RBP20.22■□□□□ 0.83
PPME1-208ENST00000543525 KIF21AQ7Z4S6 1674 aa20.22■□□□□ 0.83
PPME1-208ENST00000543525 DIEXFQ68CQ4 756 aaKnown RBP20.21■□□□□ 0.83
PPME1-208ENST00000543525 ARAP1Q96P48 1450 aa20.19■□□□□ 0.82
PPME1-208ENST00000543525 ZNF316A6NFI3 1004 aaPredicted RBP20.14■□□□□ 0.81
PPME1-208ENST00000543525 CADPSQ9ULU8 1353 aa20.11■□□□□ 0.81
PPME1-208ENST00000543525 MRC2Q9UBG0 1479 aa20.11■□□□□ 0.81
PPME1-208ENST00000543525 SCAF1Q9H7N4 1312 aaKnown RBP20.09■□□□□ 0.81
PPME1-208ENST00000543525 WDR62O43379 1518 aa20.07■□□□□ 0.8
PPME1-208ENST00000543525 OSCARQ8IYS5 282 aa20.04■□□□□ 0.8
PPME1-208ENST00000543525 ACIN1Q9UKV3 1341 aaKnown RBP20.03■□□□□ 0.8
PPME1-208ENST00000543525 ARHGAP35Q9NRY4 1499 aa20.02■□□□□ 0.8
PPME1-208ENST00000543525 IGF1RP08069 1367 aa20.02■□□□□ 0.79
PPME1-208ENST00000543525 CENPBP07199 599 aaPredicted RBP20■□□□□ 0.79
PPME1-208ENST00000543525 KANK4Q5T7N3 995 aaPredicted RBP20■□□□□ 0.79
PPME1-208ENST00000543525 CLSPNQ9HAW4 1339 aa19.99■□□□□ 0.79
PPME1-208ENST00000543525 FGD5Q6ZNL6 1462 aa19.99■□□□□ 0.79
PPME1-208ENST00000543525 RRBP1Q9P2E9 1410 aaKnown RBP19.98■□□□□ 0.79
PPME1-208ENST00000543525 CARMIL1Q5VZK9 1371 aa19.95■□□□□ 0.78
PPME1-208ENST00000543525 NEUROD1Q13562 356 aa19.92■□□□□ 0.78
PPME1-208ENST00000543525 FANCD2Q9BXW9 1451 aa19.91■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms