RNA–Protein interactions for RNA: ENST00000398427.6

PPME1-202, Transcript of protein phosphatase methylesterase 1, humanhuman

TSL 1 (best) BASIC

Gene PPME1, Length 2,496 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PPME1-202ENST00000398427 NISCHQ9Y2I1 1504 aa26.98■■□□□ 1.91
PPME1-202ENST00000398427 CCDC180Q9P1Z9 1646 aa23.8■■□□□ 1.4
PPME1-202ENST00000398427 ABCC9O60706 1549 aa22.9■■□□□ 1.26
PPME1-202ENST00000398427 ZCCHC6Q5VYS8 1495 aaKnown RBP22.58■■□□□ 1.21
PPME1-202ENST00000398427 DCAF8L2P0C7V8 631 aa22.35■■□□□ 1.17
PPME1-202ENST00000398427 DCAF1Q9Y4B6 1507 aa22.32■■□□□ 1.16
PPME1-202ENST00000398427 NACADO15069 1562 aa22.26■■□□□ 1.15
PPME1-202ENST00000398427 MYO15BQ96JP2 1530 aa22.25■■□□□ 1.15
PPME1-202ENST00000398427 RB1CC1Q8TDY2 1594 aa22.19■■□□□ 1.14
PPME1-202ENST00000398427 SCRIBQ14160 1630 aa21.78■■□□□ 1.08
PPME1-202ENST00000398427 UNC13AQ9UPW8 1703 aa21.76■■□□□ 1.07
PPME1-202ENST00000398427 SHROOM4Q9ULL8 1493 aa21.6■■□□□ 1.05
PPME1-202ENST00000398427 BICRAQ9NZM4 1560 aa21.54■■□□□ 1.04
PPME1-202ENST00000398427 PABPN1Q86U42 306 aaKnown RBP eCLIP21.46■■□□□ 1.03
PPME1-202ENST00000398427 CECR2Q9BXF3 1484 aa21■□□□□ 0.95
PPME1-202ENST00000398427 EIF4G1Q04637 1599 aaKnown RBP20.93■□□□□ 0.94
PPME1-202ENST00000398427 BAZ1AQ9NRL2 1556 aaPredicted RBP20.88■□□□□ 0.93
PPME1-202ENST00000398427 SMARCA4P51532 1647 aa20.86■□□□□ 0.93
PPME1-202ENST00000398427 MROH2BQ7Z745 1585 aa20.83■□□□□ 0.92
PPME1-202ENST00000398427 CC2D2AQ9P2K1 1620 aa20.74■□□□□ 0.91
PPME1-202ENST00000398427 RSF1Q96T23 1441 aaPredicted RBP20.72■□□□□ 0.91
PPME1-202ENST00000398427 PEG3Q9GZU2 1588 aa20.64■□□□□ 0.9
PPME1-202ENST00000398427 DNAJC5BQ9UF47 199 aa20.64■□□□□ 0.89
PPME1-202ENST00000398427 WIZO95785 1651 aa20.63■□□□□ 0.89
PPME1-202ENST00000398427 ATAD2BQ9ULI0 1458 aa20.63■□□□□ 0.89
PPME1-202ENST00000398427 SMARCA2P51531 1590 aa20.61■□□□□ 0.89
PPME1-202ENST00000398427 NCAPD3P42695 1498 aa20.53■□□□□ 0.88
PPME1-202ENST00000398427 SUPT5HO00267 1087 aaKnown RBP20.51■□□□□ 0.87
PPME1-202ENST00000398427 HMGXB3Q12766 1538 aa20.49■□□□□ 0.87
PPME1-202ENST00000398427 BAZ1BQ9UIG0 1483 aaKnown RBP20.47■□□□□ 0.87
PPME1-202ENST00000398427 TOP2AP11388 1531 aaKnown RBP20.41■□□□□ 0.86
PPME1-202ENST00000398427 CCDC88BA6NC98 1476 aa20.17■□□□□ 0.82
PPME1-202ENST00000398427 NESP48681 1621 aa19.96■□□□□ 0.79
PPME1-202ENST00000398427 CADPSQ9ULU8 1353 aa19.95■□□□□ 0.78
PPME1-202ENST00000398427 CFTRP13569 1480 aa19.94■□□□□ 0.78
PPME1-202ENST00000398427 LAMC3Q9Y6N6 1575 aa19.93■□□□□ 0.78
PPME1-202ENST00000398427 PRDM2Q13029 1718 aa19.86■□□□□ 0.77
PPME1-202ENST00000398427 PDS5BQ9NTI5 1447 aa19.76■□□□□ 0.75
PPME1-202ENST00000398427 KIF21AQ7Z4S6 1674 aa19.75■□□□□ 0.75
PPME1-202ENST00000398427 FANCD2Q9BXW9 1451 aa19.74■□□□□ 0.75
PPME1-202ENST00000398427 ERCC6Q03468 1493 aa19.68■□□□□ 0.74
PPME1-202ENST00000398427 CEP164Q9UPV0 1460 aa19.68■□□□□ 0.74
PPME1-202ENST00000398427 ABCC8Q09428 1581 aa19.6■□□□□ 0.73
PPME1-202ENST00000398427 THOC2Q8NI27 1593 aaKnown RBP19.57■□□□□ 0.72
PPME1-202ENST00000398427 MRC2Q9UBG0 1479 aa19.55■□□□□ 0.72
PPME1-202ENST00000398427 URB2Q14146 1524 aaKnown RBP19.54■□□□□ 0.72
PPME1-202ENST00000398427 WRNQ14191 1432 aaPredicted RBP eCLIP19.52■□□□□ 0.71
PPME1-202ENST00000398427 CUX1P39880 1505 aa19.51■□□□□ 0.71
PPME1-202ENST00000398427 DNMBPQ6XZF7 1577 aa19.5■□□□□ 0.71
PPME1-202ENST00000398427 WDR62O43379 1518 aa19.49■□□□□ 0.71
PPME1-202ENST00000398427 SYNJ1O43426 1573 aa19.49■□□□□ 0.71
PPME1-202ENST00000398427 TOPBP1Q92547 1522 aa19.48■□□□□ 0.71
PPME1-202ENST00000398427 TOP2BQ02880 1626 aa19.45■□□□□ 0.7
PPME1-202ENST00000398427 BIVM-ERCC5R4GMW8 1640 aa19.45■□□□□ 0.7
PPME1-202ENST00000398427 CHIC1Q5VXU3 224 aa19.39■□□□□ 0.69
PPME1-202ENST00000398427 FGD5Q6ZNL6 1462 aa19.37■□□□□ 0.69
PPME1-202ENST00000398427 POLA1P09884 1462 aaPredicted RBP19.35■□□□□ 0.69
PPME1-202ENST00000398427 TRIM41Q8WV44 630 aa19.32■□□□□ 0.68
PPME1-202ENST00000398427 CUX2O14529 1486 aa19.31■□□□□ 0.68
PPME1-202ENST00000398427 RAD54L2Q9Y4B4 1467 aa19.27■□□□□ 0.68
PPME1-202ENST00000398427 TARBP1Q13395 1621 aaKnown RBP19.26■□□□□ 0.67
PPME1-202ENST00000398427 SOGA1O94964 1423 aa19.25■□□□□ 0.67
PPME1-202ENST00000398427 IFT140Q96RY7 1462 aa19.23■□□□□ 0.67
PPME1-202ENST00000398427 WDR97A6NE52 1622 aa19.22■□□□□ 0.67
PPME1-202ENST00000398427 ABCA10Q8WWZ4 1543 aa19.19■□□□□ 0.66
PPME1-202ENST00000398427 ZNF608Q9ULD9 1512 aaPredicted RBP19.15■□□□□ 0.66
PPME1-202ENST00000398427 TDRD9Q8NDG6 1382 aaKnown RBP19.11■□□□□ 0.65
PPME1-202ENST00000398427 EIF4G3O43432 1585 aaKnown RBP19.1■□□□□ 0.65
PPME1-202ENST00000398427 ABCA5Q8WWZ7 1642 aa19.1■□□□□ 0.65
PPME1-202ENST00000398427 AQRO60306 1485 aaKnown RBP eCLIP19.08■□□□□ 0.654e-7■■■■□ 22.3
PPME1-202ENST00000398427 RUSC2Q8N2Y8 1516 aa19.08■□□□□ 0.64
PPME1-202ENST00000398427 KIF27Q86VH2 1401 aa19.05■□□□□ 0.64
PPME1-202ENST00000398427 GAPVD1Q14C86 1478 aa19.05■□□□□ 0.64
PPME1-202ENST00000398427 PBRM1Q86U86 1689 aa19.02■□□□□ 0.64
PPME1-202ENST00000398427 GRIN2BQ13224 1484 aa18.97■□□□□ 0.63
PPME1-202ENST00000398427 ERICH3Q5RHP9 1530 aa18.96■□□□□ 0.63
PPME1-202ENST00000398427 EEA1Q15075 1411 aa18.96■□□□□ 0.63
PPME1-202ENST00000398427 FAM9AQ8IZU1 332 aaPredicted RBP18.95■□□□□ 0.62
PPME1-202ENST00000398427 IGF1RP08069 1367 aa18.94■□□□□ 0.62
PPME1-202ENST00000398427 SNAPC4Q5SXM2 1469 aa18.92■□□□□ 0.62
PPME1-202ENST00000398427 MAGI1Q96QZ7 1491 aaPredicted RBP18.89■□□□□ 0.61
PPME1-202ENST00000398427 ADAMTS12P58397 1594 aa18.88■□□□□ 0.61
PPME1-202ENST00000398427 CUL7Q14999 1698 aa18.88■□□□□ 0.61
PPME1-202ENST00000398427 CSRNP3Q8WYN3 585 aa18.88■□□□□ 0.61
PPME1-202ENST00000398427 FHAD1B1AJZ9 1412 aa18.83■□□□□ 0.6
PPME1-202ENST00000398427 CARMIL1Q5VZK9 1371 aa18.83■□□□□ 0.6
PPME1-202ENST00000398427 PRXQ9BXM0 1461 aa18.82■□□□□ 0.6
PPME1-202ENST00000398427 SYNJ2O15056 1496 aa18.81■□□□□ 0.6
PPME1-202ENST00000398427 CHD1O14646 1710 aa18.79■□□□□ 0.6
PPME1-202ENST00000398427 KIF21BO75037 1637 aa18.77■□□□□ 0.6
PPME1-202ENST00000398427 RAPGEF2Q9Y4G8 1499 aa18.77■□□□□ 0.6
PPME1-202ENST00000398427 GRIN2AQ12879 1464 aa18.75■□□□□ 0.59
PPME1-202ENST00000398427 FBLN2P98095 1184 aa18.74■□□□□ 0.59
PPME1-202ENST00000398427 CHMP7Q8WUX9 453 aaPredicted RBP18.74■□□□□ 0.59
PPME1-202ENST00000398427 EHMT2Q96KQ7 1210 aa18.69■□□□□ 0.58
PPME1-202ENST00000398427 GOLGA3Q08378 1498 aa18.68■□□□□ 0.58
PPME1-202ENST00000398427 CEP170Q5SW79 1584 aa18.67■□□□□ 0.58
PPME1-202ENST00000398427 NUP160Q12769 1436 aa18.64■□□□□ 0.58
PPME1-202ENST00000398427 CTTNBP2Q8WZ74 1663 aa18.61■□□□□ 0.57
PPME1-202ENST00000398427 LOC105371045A0A1W2PR82 267 aa18.61■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms