Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.974e-7■□□□□ 10.1
YBX3P16989 VBP1-204ENST00000625964 1547 ntTSL 5 BASIC7.53□□□□□ -1.24e-7■□□□□ 10.1
YBX3P16989 SF3A1-207ENST00000471342 459 ntTSL 212.22□□□□□ -0.451e-8■□□□□ 10
YBX3P16989 VARS-217ENST00000440048 804 ntTSL 1 (best)30.88■■■□□ 2.532e-9■□□□□ 10
YBX3P16989 POLD2-205ENST00000436400 249 ntTSL 37.53□□□□□ -1.21e-8■□□□□ 10
YBX3P16989 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.935e-9■□□□□ 10
YBX3P16989 GSE1-204ENST00000411612 872 ntTSL 528.65■■■□□ 2.181e-13■□□□□ 10
YBX3P16989 GSE1-215ENST00000635906 666 ntTSL 316.31■□□□□ 0.21e-13■□□□□ 10
YBX3P16989 GSE1-203ENST00000405402 4366 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.161e-13■□□□□ 10
YBX3P16989 ACTN1-219ENST00000556432 558 ntTSL 1 (best)19.87■□□□□ 0.771e-6■□□□□ 10
YBX3P16989 ACTN1-207ENST00000553290 619 ntTSL 517.21■□□□□ 0.359e-8■□□□□ 10
YBX3P16989 GFM2-203ENST00000427854 1870 ntTSL 2 BASIC12.31□□□□□ -0.441e-6■□□□□ 10
YBX3P16989 GFM2-209ENST00000514734 907 ntTSL 57.43□□□□□ -1.221e-6■□□□□ 10
YBX3P16989 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.743e-8■□□□□ 10
YBX3P16989 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC23.56■■□□□ 1.363e-8■□□□□ 10
YBX3P16989 CAB39-207ENST00000614925 1619 ntTSL 5 BASIC9.64□□□□□ -0.873e-8■□□□□ 10
YBX3P16989 CAB39-204ENST00000478152 654 ntTSL 28.1□□□□□ -1.113e-8■□□□□ 10
YBX3P16989 GCN1-201ENST00000300648 8675 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.62e-7■□□□□ 10
YBX3P16989 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC34.81■■■■□ 3.163e-6■□□□□ 10
YBX3P16989 COMMD3-214ENST00000496071 1150 ntTSL 522.4■■□□□ 1.183e-6■□□□□ 10
YBX3P16989 COMMD3-BMI1-201ENST00000417470 745 ntTSL 522.21■■□□□ 1.153e-6■□□□□ 10
YBX3P16989 COMMD3-BMI1-204ENST00000489125 329 ntTSL 221.48■■□□□ 1.033e-6■□□□□ 10
YBX3P16989 COMMD3-202ENST00000444869 757 ntTSL 218.66■□□□□ 0.583e-6■□□□□ 10
YBX3P16989 COMMD3-203ENST00000448361 757 ntTSL 318.66■□□□□ 0.583e-6■□□□□ 10
YBX3P16989 COMMD3-205ENST00000463688 1407 ntTSL 517.59■□□□□ 0.413e-6■□□□□ 10
YBX3P16989 DDB1-211ENST00000538280 227 ntTSL 311.23□□□□□ -0.617e-15■□□□□ 10
YBX3P16989 COMMD3-BMI1-203ENST00000475460 508 ntTSL 210.44□□□□□ -0.743e-6■□□□□ 10
YBX3P16989 COMMD3-204ENST00000456711 748 ntTSL 39.78□□□□□ -0.843e-6■□□□□ 10
YBX3P16989 COMMD3-BMI1-206ENST00000602395 621 ntTSL 29.5□□□□□ -0.893e-6■□□□□ 10
YBX3P16989 COMMD3-BMI1-205ENST00000602390 1419 ntAPPRIS P1 TSL 2 BASIC9.35□□□□□ -0.913e-6■□□□□ 10
YBX3P16989 COMMD3-215ENST00000602574 2290 ntTSL 1 (best)8.85□□□□□ -0.993e-6■□□□□ 10
YBX3P16989 COMMD3-213ENST00000483684 722 ntTSL 58.83□□□□□ -13e-6■□□□□ 10
YBX3P16989 COMMD3-212ENST00000479958 1443 ntTSL 28.7□□□□□ -1.023e-6■□□□□ 10
YBX3P16989 COMMD3-BMI1-202ENST00000463409 605 ntTSL 36.26□□□□□ -1.413e-6■□□□□ 10
YBX3P16989 PHGDH-232ENST00000641947 1774 nt20.43■□□□□ 0.863e-7■□□□□ 10
YBX3P16989 NOP53-204ENST00000595143 810 ntTSL 526.59■■□□□ 1.857e-11■□□□□ 10
YBX3P16989 NOP53-205ENST00000597985 656 ntTSL 320.55■□□□□ 0.887e-11■□□□□ 10
YBX3P16989 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC29.42■■■□□ 2.37e-10■□□□□ 10
YBX3P16989 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.117e-10■□□□□ 10
YBX3P16989 DHFR-202ENST00000504396 1447 ntTSL 2 BASIC12.7□□□□□ -0.387e-10■□□□□ 10
YBX3P16989 DHFR-205ENST00000511032 1474 ntTSL 2 BASIC12.24□□□□□ -0.457e-10■□□□□ 10
YBX3P16989 DHFR-206ENST00000513048 994 ntTSL 1 (best)11.11□□□□□ -0.637e-10■□□□□ 10
YBX3P16989 MTOR-205ENST00000476768 610 ntTSL 211.36□□□□□ -0.591e-9■□□□□ 10
YBX3P16989 MTOR-207ENST00000495435 2356 ntTSL 410.47□□□□□ -0.731e-9■□□□□ 10
YBX3P16989 RPL18-211ENST00000550973 1111 ntTSL 526.99■■□□□ 1.916e-43■□□□□ 10
YBX3P16989 RPL18-201ENST00000084795 612 ntTSL 1 (best)23.56■■□□□ 1.366e-43■□□□□ 10
YBX3P16989 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.366e-43■□□□□ 10
YBX3P16989 RPL18-209ENST00000550645 463 ntTSL 5 BASIC23.56■■□□□ 1.366e-43■□□□□ 10
YBX3P16989 RPL18-214ENST00000552588 559 ntTSL 3 BASIC23.56■■□□□ 1.366e-43■□□□□ 10
YBX3P16989 RPL18-213ENST00000552347 1645 ntTSL 522.13■■□□□ 1.136e-43■□□□□ 10
YBX3P16989 RPL18-206ENST00000549370 628 ntTSL 521.13■□□□□ 0.976e-43■□□□□ 10
YBX3P16989 RPL18-212ENST00000551749 2091 ntTSL 218.13■□□□□ 0.496e-43■□□□□ 10
YBX3P16989 RPL18-205ENST00000549273 1036 ntTSL 2 BASIC17.89■□□□□ 0.456e-43■□□□□ 10
YBX3P16989 RPL18-204ENST00000547897 440 ntTSL 517.19■□□□□ 0.346e-43■□□□□ 10
YBX3P16989 RPL18-203ENST00000547892 3844 nt12.4□□□□□ -0.426e-43■□□□□ 10
YBX3P16989 UBC-204ENST00000536661 624 ntTSL 220.01■□□□□ 0.791e-38■□□□□ 10
YBX3P16989 UBC-211ENST00000542416 517 ntTSL 412.56□□□□□ -0.41e-38■□□□□ 10
YBX3P16989 BUD23-212ENST00000453316 452 ntTSL 317.56■□□□□ 0.43e-8■□□□□ 10
YBX3P16989 BUD23-211ENST00000442099 691 ntTSL 317.19■□□□□ 0.343e-8■□□□□ 10
YBX3P16989 BUD23-207ENST00000430446 738 ntTSL 317.02■□□□□ 0.323e-8■□□□□ 10
YBX3P16989 GARS-203ENST00000454308 814 ntTSL 526.04■■□□□ 1.763e-14■□□□□ 10
YBX3P16989 CA1-202ENST00000517429 652 ntTSL 59.84□□□□□ -0.836e-8■□□□□ 10
YBX3P16989 CA1-203ENST00000517590 696 ntTSL 59.84□□□□□ -0.836e-8■□□□□ 10
YBX3P16989 CA1-206ENST00000518341 655 ntTSL 29.84□□□□□ -0.836e-8■□□□□ 10
YBX3P16989 CA1-208ENST00000519991 527 ntTSL 29.84□□□□□ -0.836e-8■□□□□ 10
YBX3P16989 CA1-209ENST00000520093 594 ntTSL 29.84□□□□□ -0.836e-8■□□□□ 10
YBX3P16989 CA1-210ENST00000520663 454 ntTSL 39.84□□□□□ -0.836e-8■□□□□ 10
YBX3P16989 CA1-212ENST00000520990 525 ntTSL 39.84□□□□□ -0.836e-8■□□□□ 10
YBX3P16989 CA1-216ENST00000522579 614 ntTSL 39.84□□□□□ -0.836e-8■□□□□ 10
YBX3P16989 CA1-217ENST00000522662 501 ntTSL 29.84□□□□□ -0.836e-8■□□□□ 10
YBX3P16989 CA1-218ENST00000522814 618 ntTSL 39.84□□□□□ -0.836e-8■□□□□ 10
YBX3P16989 CA1-219ENST00000523022 1208 ntAPPRIS P1 TSL 1 (best) BASIC9.84□□□□□ -0.836e-8■□□□□ 10
YBX3P16989 CA1-221ENST00000523858 518 ntTSL 39.84□□□□□ -0.836e-8■□□□□ 10
YBX3P16989 CA1-223ENST00000524324 675 ntTSL 29.84□□□□□ -0.836e-8■□□□□ 10
YBX3P16989 CA1-224ENST00000542576 1236 ntAPPRIS P1 TSL 5 BASIC7.84□□□□□ -1.156e-8■□□□□ 10
YBX3P16989 CA1-214ENST00000521846 666 ntTSL 37.6□□□□□ -1.196e-8■□□□□ 10
YBX3P16989 CA1-201ENST00000431316 1232 ntAPPRIS P1 TSL 5 BASIC7.34□□□□□ -1.236e-8■□□□□ 10
YBX3P16989 CA1-222ENST00000523953 2785 ntAPPRIS P1 TSL 1 (best) BASIC7.02□□□□□ -1.296e-8■□□□□ 10
YBX3P16989 CA1-225ENST00000626824 2405 ntTSL 5 BASIC6.74□□□□□ -1.336e-8■□□□□ 10
YBX3P16989 CA1-205ENST00000518233 355 ntTSL 56.29□□□□□ -1.46e-8■□□□□ 10
YBX3P16989 CA1-215ENST00000522389 551 ntTSL 3 BASIC5.74□□□□□ -1.496e-8■□□□□ 10
YBX3P16989 CA1-204ENST00000517618 832 ntTSL 1 (best)5.14□□□□□ -1.596e-8■□□□□ 10
YBX3P16989 BCCIP-204ENST00000463330 500 ntTSL 35.31□□□□□ -1.563e-8■□□□□ 10
YBX3P16989 HDAC3-203ENST00000467533 663 ntTSL 315.12■□□□□ 0.018e-8■□□□□ 10
YBX3P16989 CD81-214ENST00000530239 425 ntTSL 231.55■■■□□ 2.645e-9■□□□□ 10
YBX3P16989 NDUFA9-202ENST00000396655 1037 ntTSL 1 (best)14.54□□□□□ -0.085e-9■□□□□ 10
YBX3P16989 AC005832.4-201ENST00000536588 818 ntAPPRIS P1 TSL 3 BASIC14.3□□□□□ -0.125e-9■□□□□ 10
YBX3P16989 NDUFA9-207ENST00000542369 548 ntTSL 413.25□□□□□ -0.295e-9■□□□□ 10
YBX3P16989 NDUFA9-205ENST00000539573 500 ntTSL 312.62□□□□□ -0.395e-9■□□□□ 10
YBX3P16989 NDUFA9-209ENST00000544679 782 ntTSL 212.62□□□□□ -0.395e-9■□□□□ 10
YBX3P16989 NDUFA9-203ENST00000535050 512 ntTSL 312.14□□□□□ -0.475e-9■□□□□ 10
YBX3P16989 APRT-206ENST00000567057 437 ntTSL 216.55■□□□□ 0.242e-9■□□□□ 10
YBX3P16989 PPP2R5C-216ENST00000556086 279 ntTSL 515.5■□□□□ 0.072e-11■□□□□ 10
YBX3P16989 PPP2R5C-206ENST00000553554 564 ntTSL 510.8□□□□□ -0.682e-11■□□□□ 10
YBX3P16989 MED13L-205ENST00000549755 2339 nt5.38□□□□□ -1.552e-11■□□□□ 10
YBX3P16989 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC27.15■■□□□ 1.941e-8■□□□□ 10
YBX3P16989 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.751e-8■□□□□ 10
YBX3P16989 NIPSNAP2-211ENST00000497279 4255 ntTSL 24.8□□□□□ -1.641e-8■□□□□ 10
YBX3P16989 CD68-203ENST00000584180 891 ntTSL 212.9□□□□□ -0.348e-9■□□□□ 10
YBX3P16989 DDX39A-201ENST00000242776 1471 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.722e-7■□□□□ 10
Retrieved 100 of 29,075 protein–RNA pairs in 274.4 ms