RNA–Protein interactions for RNA: ENST00000376836.7

COMMD3-201, Transcript of COMM domain containing 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COMMD3, Length 1,342 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD3-201ENST00000376836 NISCHQ9Y2I1 1504 aa65.42■■■■■ 8.06
COMMD3-201ENST00000376836 CCDC180Q9P1Z9 1646 aa58.08■■■■■ 6.89
COMMD3-201ENST00000376836 ABCC9O60706 1549 aa56.83■■■■■ 6.69
COMMD3-201ENST00000376836 DCAF8L2P0C7V8 631 aa54.86■■■■■ 6.37
COMMD3-201ENST00000376836 RB1CC1Q8TDY2 1594 aa54.72■■■■■ 6.35
COMMD3-201ENST00000376836 NACADO15069 1562 aa54.66■■■■■ 6.34
COMMD3-201ENST00000376836 ZCCHC6Q5VYS8 1495 aaKnown RBP54.47■■■■■ 6.31
COMMD3-201ENST00000376836 MYO15BQ96JP2 1530 aa54.32■■■■■ 6.29
COMMD3-201ENST00000376836 DCAF1Q9Y4B6 1507 aa54.12■■■■■ 6.25
COMMD3-201ENST00000376836 UNC13AQ9UPW8 1703 aa53.29■■■■■ 6.12
COMMD3-201ENST00000376836 PABPN1Q86U42 306 aaKnown RBP eCLIP53.17■■■■■ 6.1
COMMD3-201ENST00000376836 SCRIBQ14160 1630 aa53.04■■■■■ 6.08
COMMD3-201ENST00000376836 BICRAQ9NZM4 1560 aa52.92■■■■■ 6.06
COMMD3-201ENST00000376836 DNAJC5BQ9UF47 199 aa52.58■■■■■ 6.01
COMMD3-201ENST00000376836 SHROOM4Q9ULL8 1493 aa52.49■■■■■ 5.99
COMMD3-201ENST00000376836 EIF4G1Q04637 1599 aaKnown RBP51.59■■■■■ 5.85
COMMD3-201ENST00000376836 CC2D2AQ9P2K1 1620 aa51.36■■■■■ 5.81
COMMD3-201ENST00000376836 CECR2Q9BXF3 1484 aa51.07■■■■■ 5.77
COMMD3-201ENST00000376836 BAZ1AQ9NRL2 1556 aaPredicted RBP50.73■■■■■ 5.71
COMMD3-201ENST00000376836 SMARCA4P51532 1647 aa50.71■■■■■ 5.71
COMMD3-201ENST00000376836 ATAD2BQ9ULI0 1458 aa50.46■■■■■ 5.67
COMMD3-201ENST00000376836 SMARCA2P51531 1590 aa50.44■■■■■ 5.66
COMMD3-201ENST00000376836 NCAPD3P42695 1498 aa50.43■■■■■ 5.66
COMMD3-201ENST00000376836 MROH2BQ7Z745 1585 aa50.38■■■■■ 5.66
COMMD3-201ENST00000376836 PEG3Q9GZU2 1588 aa50.2■■■■■ 5.63
COMMD3-201ENST00000376836 HMGXB3Q12766 1538 aa50.15■■■■■ 5.62
COMMD3-201ENST00000376836 BAZ1BQ9UIG0 1483 aaKnown RBP50.1■■■■■ 5.61
COMMD3-201ENST00000376836 RSF1Q96T23 1441 aaPredicted RBP49.88■■■■■ 5.57
COMMD3-201ENST00000376836 WIZO95785 1651 aa49.84■■■■■ 5.57
COMMD3-201ENST00000376836 TOP2AP11388 1531 aaKnown RBP49.36■■■■■ 5.49
COMMD3-201ENST00000376836 NESP48681 1621 aa49.15■■■■■ 5.46
COMMD3-201ENST00000376836 LAMC3Q9Y6N6 1575 aa49.08■■■■■ 5.45
COMMD3-201ENST00000376836 ERCC6Q03468 1493 aa49.08■■■■■ 5.45
COMMD3-201ENST00000376836 CADPSQ9ULU8 1353 aa49■■■■■ 5.44
COMMD3-201ENST00000376836 PDS5BQ9NTI5 1447 aa48.85■■■■■ 5.41
COMMD3-201ENST00000376836 SUPT5HO00267 1087 aaKnown RBP48.83■■■■■ 5.41
COMMD3-201ENST00000376836 CCDC88BA6NC98 1476 aa48.79■■■■■ 5.4
COMMD3-201ENST00000376836 CFTRP13569 1480 aa48.68■■■■■ 5.38
COMMD3-201ENST00000376836 KIF21AQ7Z4S6 1674 aa48.53■■■■■ 5.36
COMMD3-201ENST00000376836 CUX2O14529 1486 aa48.45■■■■■ 5.35
COMMD3-201ENST00000376836 FANCD2Q9BXW9 1451 aa48.43■■■■■ 5.34
COMMD3-201ENST00000376836 DNAJC5Q9H3Z4 198 aa48.41■■■■■ 5.34
COMMD3-201ENST00000376836 CEP164Q9UPV0 1460 aa48.38■■■■■ 5.33
COMMD3-201ENST00000376836 THOC2Q8NI27 1593 aaKnown RBP48.34■■■■■ 5.33
COMMD3-201ENST00000376836 MRC2Q9UBG0 1479 aa48.27■■■■■ 5.32
COMMD3-201ENST00000376836 PRDM2Q13029 1718 aa48.23■■■■■ 5.31
COMMD3-201ENST00000376836 WDR62O43379 1518 aa48.05■■■■■ 5.28
COMMD3-201ENST00000376836 URB2Q14146 1524 aaKnown RBP47.87■■■■■ 5.25
COMMD3-201ENST00000376836 ABCC8Q09428 1581 aa47.73■■■■■ 5.23
COMMD3-201ENST00000376836 TOPBP1Q92547 1522 aa47.63■■■■■ 5.21
COMMD3-201ENST00000376836 DNMBPQ6XZF7 1577 aa47.58■■■■■ 5.21
COMMD3-201ENST00000376836 IFT140Q96RY7 1462 aa47.36■■■■■ 5.17
COMMD3-201ENST00000376836 CUX1P39880 1505 aa47.27■■■■■ 5.16
COMMD3-201ENST00000376836 POLA1P09884 1462 aaPredicted RBP47.22■■■■■ 5.15
COMMD3-201ENST00000376836 FGD5Q6ZNL6 1462 aa47.14■■■■■ 5.14
COMMD3-201ENST00000376836 SOGA1O94964 1423 aa47.12■■■■■ 5.13
COMMD3-201ENST00000376836 WRNQ14191 1432 aaPredicted RBP eCLIP47.08■■■■■ 5.13
COMMD3-201ENST00000376836 ZNF608Q9ULD9 1512 aaPredicted RBP47.06■■■■■ 5.12
COMMD3-201ENST00000376836 TARBP1Q13395 1621 aaKnown RBP47.04■■■■■ 5.12
COMMD3-201ENST00000376836 RAD54L2Q9Y4B4 1467 aa47.03■■■■■ 5.12
COMMD3-201ENST00000376836 TOP2BQ02880 1626 aa46.9■■■■■ 5.1
COMMD3-201ENST00000376836 EIF4G3O43432 1585 aaKnown RBP46.87■■■■■ 5.09
COMMD3-201ENST00000376836 BIVM-ERCC5R4GMW8 1640 aa46.86■■■■■ 5.09
COMMD3-201ENST00000376836 AQRO60306 1485 aaKnown RBP eCLIP46.86■■■■■ 5.096e-7■■■■□ 24.7
COMMD3-201ENST00000376836 SYNJ1O43426 1573 aa46.86■■■■■ 5.09
COMMD3-201ENST00000376836 TDRD9Q8NDG6 1382 aaKnown RBP46.82■■■■■ 5.09
COMMD3-201ENST00000376836 WDR97A6NE52 1622 aa46.75■■■■■ 5.07
COMMD3-201ENST00000376836 ABCA10Q8WWZ4 1543 aa46.68■■■■■ 5.06
COMMD3-201ENST00000376836 OSCARQ8IYS5 282 aa46.57■■■■■ 5.05
COMMD3-201ENST00000376836 GAPVD1Q14C86 1478 aa46.55■■■■■ 5.04
COMMD3-201ENST00000376836 GRIN2BQ13224 1484 aa46.54■■■■■ 5.04
COMMD3-201ENST00000376836 FBLN2P98095 1184 aa46.44■■■■■ 5.02
COMMD3-201ENST00000376836 SNAPC4Q5SXM2 1469 aa46.43■■■■■ 5.02
COMMD3-201ENST00000376836 ABCA5Q8WWZ7 1642 aa46.43■■■■■ 5.02
COMMD3-201ENST00000376836 MAGI1Q96QZ7 1491 aaPredicted RBP46.39■■■■■ 5.02
COMMD3-201ENST00000376836 PBRM1Q86U86 1689 aa46.34■■■■■ 5.01
COMMD3-201ENST00000376836 CHMP7Q8WUX9 453 aaPredicted RBP46.31■■■■■ 5
COMMD3-201ENST00000376836 CHD1O14646 1710 aa46.24■■■■■ 4.99
COMMD3-201ENST00000376836 SYNJ2O15056 1496 aa46.21■■■■■ 4.99
COMMD3-201ENST00000376836 TRIM41Q8WV44 630 aa46.15■■■■■ 4.98
COMMD3-201ENST00000376836 ERICH3Q5RHP9 1530 aa46.14■■■■■ 4.98
COMMD3-201ENST00000376836 KIF27Q86VH2 1401 aa46.13■■■■■ 4.98
COMMD3-201ENST00000376836 FHAD1B1AJZ9 1412 aa46.03■■■■■ 4.96
COMMD3-201ENST00000376836 ADAMTS12P58397 1594 aa46■■■■■ 4.95
COMMD3-201ENST00000376836 GRIN2AQ12879 1464 aa45.9■■■■■ 4.94
COMMD3-201ENST00000376836 IGF1RP08069 1367 aa45.88■■■■■ 4.94
COMMD3-201ENST00000376836 CLASP1Q7Z460 1538 aa45.75■■■■■ 4.91
COMMD3-201ENST00000376836 CUL7Q14999 1698 aa45.74■■■■■ 4.91
COMMD3-201ENST00000376836 NUP160Q12769 1436 aa45.67■■■■■ 4.9
COMMD3-201ENST00000376836 ARHGEF11O15085 1522 aa45.66■■■■■ 4.9
COMMD3-201ENST00000376836 CARMIL1Q5VZK9 1371 aa45.66■■■■■ 4.9
COMMD3-201ENST00000376836 RIMBP3CA6NJZ7 1639 aa45.64■■■■■ 4.9
COMMD3-201ENST00000376836 RIMBP3BA6NNM3 1639 aa45.64■■■■■ 4.9
COMMD3-201ENST00000376836 RIMBP3Q9UFD9 1639 aa45.64■■■■■ 4.9
COMMD3-201ENST00000376836 CEP170Q5SW79 1584 aa45.61■■■■■ 4.89
COMMD3-201ENST00000376836 RUSC2Q8N2Y8 1516 aa45.61■■■■■ 4.89
COMMD3-201ENST00000376836 CHIC1Q5VXU3 224 aa45.53■■■■■ 4.88
COMMD3-201ENST00000376836 RAPGEF2Q9Y4G8 1499 aa45.38■■■■■ 4.86
COMMD3-201ENST00000376836 CYB5RLQ6IPT4 315 aa45.38■■■■■ 4.86
COMMD3-201ENST00000376836 JPH4Q96JJ6 628 aa45.32■■■■■ 4.85
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms