RNA–Protein interactions for RNA: ENST00000479958.6

COMMD3-212, Transcript of COMM domain containing 3, humanhuman

TSL 2

Gene COMMD3, Length 1,443 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD3-212ENST00000479958 AEBP2Q6ZN18 517 aaPredicted RBP31.07■■■□□ 2.56
COMMD3-212ENST00000479958 CHIC1Q5VXU3 224 aa30.2■■■□□ 2.42
COMMD3-212ENST00000479958 SENP3Q9H4L4 574 aaPredicted RBP26.56■■□□□ 1.84
COMMD3-212ENST00000479958 PHF23Q9BUL5 403 aaPredicted RBP26.45■■□□□ 1.82
COMMD3-212ENST00000479958 FOXD1Q16676 465 aa24.6■■□□□ 1.53
COMMD3-212ENST00000479958 PLPPR3Q6T4P5 718 aa24.47■■□□□ 1.51
COMMD3-212ENST00000479958 ADRA2BP18089 450 aa23.42■■□□□ 1.34
COMMD3-212ENST00000479958 PPP6R1Q9UPN7 881 aa23.42■■□□□ 1.34
COMMD3-212ENST00000479958 PIAS4Q8N2W9 510 aaPredicted RBP23.18■■□□□ 1.3
COMMD3-212ENST00000479958 MSH5O43196 834 aa22.9■■□□□ 1.26
COMMD3-212ENST00000479958 POTEDQ86YR6 584 aa22.14■■□□□ 1.14
COMMD3-212ENST00000479958 SCAF1Q9H7N4 1312 aaKnown RBP21.63■■□□□ 1.05
COMMD3-212ENST00000479958 PPP4R3CPQ6ZMV5 832 aa21.5■■□□□ 1.03
COMMD3-212ENST00000479958 MAPK8IP2Q13387 824 aaPredicted RBP21.32■■□□□ 1
COMMD3-212ENST00000479958 DMRT2Q9Y5R5 561 aa21.12■□□□□ 0.97
COMMD3-212ENST00000479958 CNKSR2Q8WXI2 1034 aa20.99■□□□□ 0.95
COMMD3-212ENST00000479958 NCBP3Q53F19 620 aaKnown RBP20.97■□□□□ 0.95
COMMD3-212ENST00000479958 KCNA4P22459 653 aa20.64■□□□□ 0.89
COMMD3-212ENST00000479958 RNF216Q9NWF9 866 aaPredicted RBP20.62■□□□□ 0.89
COMMD3-212ENST00000479958 HOXD11P31277 338 aaPredicted RBP20.58■□□□□ 0.88
COMMD3-212ENST00000479958 NPM3O75607 178 aaKnown RBP20.51■□□□□ 0.87
COMMD3-212ENST00000479958 DCAF8L1A6NGE4 600 aa20.29■□□□□ 0.84
COMMD3-212ENST00000479958 DNAJC5BQ9UF47 199 aa19.99■□□□□ 0.79
COMMD3-212ENST00000479958 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.69■□□□□ 0.74
COMMD3-212ENST00000479958 SLC4A1APQ9BWU0 796 aaKnown RBP19.68■□□□□ 0.74
COMMD3-212ENST00000479958 RNF39Q9H2S5 420 aa19.51■□□□□ 0.71
COMMD3-212ENST00000479958 CACNB1Q02641 598 aaPredicted RBP19.44■□□□□ 0.7
COMMD3-212ENST00000479958 SLC4A2P04920 1241 aa19.4■□□□□ 0.7
COMMD3-212ENST00000479958 C1QBPQ07021 282 aaKnown RBP19.34■□□□□ 0.69
COMMD3-212ENST00000479958 U3KPZ7 1027 aaPredicted RBP19.23■□□□□ 0.67
COMMD3-212ENST00000479958 FOXD4L1Q9NU39 408 aa19.14■□□□□ 0.65
COMMD3-212ENST00000479958 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.08■□□□□ 0.64
COMMD3-212ENST00000479958 HNRNPUL2Q1KMD3 747 aaKnown RBP19.08■□□□□ 0.64
COMMD3-212ENST00000479958 MYCNP04198 464 aaPredicted RBP19.02■□□□□ 0.64
COMMD3-212ENST00000479958 APLP2Q06481 763 aa18.97■□□□□ 0.63
COMMD3-212ENST00000479958 SAMD1Q6SPF0 538 aaPredicted RBP18.95■□□□□ 0.62
COMMD3-212ENST00000479958 ZBTB22O15209 634 aa18.91■□□□□ 0.62
COMMD3-212ENST00000479958 CAPN15O75808 1086 aa18.8■□□□□ 0.6
COMMD3-212ENST00000479958 EHMT2Q96KQ7 1210 aa18.78■□□□□ 0.6
COMMD3-212ENST00000479958 SPINK5Q9NQ38 1064 aaPredicted RBP18.76■□□□□ 0.59
COMMD3-212ENST00000479958 CSRNP3Q8WYN3 585 aa18.67■□□□□ 0.58
COMMD3-212ENST00000479958 ZNF219Q9P2Y4 722 aaPredicted RBP18.66■□□□□ 0.58
COMMD3-212ENST00000479958 TRHP20396 242 aaPredicted RBP18.64■□□□□ 0.57
COMMD3-212ENST00000479958 ATXN8OSP0DMR3 200 aa18.55■□□□□ 0.56
COMMD3-212ENST00000479958 DSG3P32926 999 aa18.48■□□□□ 0.55
COMMD3-212ENST00000479958 ATF5Q9Y2D1 282 aaPredicted RBP18.4■□□□□ 0.54
COMMD3-212ENST00000479958 ABCB7O75027 752 aa18.35■□□□□ 0.53
COMMD3-212ENST00000479958 POLA2Q14181 598 aa18.27■□□□□ 0.52
COMMD3-212ENST00000479958 ZBTB12Q9Y330 459 aaPredicted RBP18.03■□□□□ 0.48
COMMD3-212ENST00000479958 FBLN2P98095 1184 aa17.85■□□□□ 0.45
COMMD3-212ENST00000479958 RBM42Q9BTD8 480 aaKnown RBP17.73■□□□□ 0.43
COMMD3-212ENST00000479958 MKRN4PQ13434 485 aaPredicted RBP17.61■□□□□ 0.41
COMMD3-212ENST00000479958 OSCARQ8IYS5 282 aa17.59■□□□□ 0.41
COMMD3-212ENST00000479958 SPDYE2BA6NHP3 402 aa17.47■□□□□ 0.39
COMMD3-212ENST00000479958 SPDYE6P0CI01 402 aa17.47■□□□□ 0.39
COMMD3-212ENST00000479958 SPDYE2Q495Y8 402 aa17.47■□□□□ 0.39
COMMD3-212ENST00000479958 AKT1S1Q96B36 256 aa17.42■□□□□ 0.38
COMMD3-212ENST00000479958 ZNF692Q9BU19 519 aaPredicted RBP17.38■□□□□ 0.37
COMMD3-212ENST00000479958 POTEHQ6S545 545 aa17.37■□□□□ 0.37
COMMD3-212ENST00000479958 SSUH2Q9Y2M2 353 aa17.23■□□□□ 0.35
COMMD3-212ENST00000479958 REM2Q8IYK8 340 aaPredicted RBP17.21■□□□□ 0.34
COMMD3-212ENST00000479958 SPDYE4A6NLX3 237 aa17.2■□□□□ 0.34
COMMD3-212ENST00000479958 PABPN1Q86U42 306 aaKnown RBP eCLIP17.1■□□□□ 0.33
COMMD3-212ENST00000479958 SPDYE1Q8NFV5 336 aaPredicted RBP17.04■□□□□ 0.32
COMMD3-212ENST00000479958 CHRDL2Q6WN34 429 aa17.02■□□□□ 0.31
COMMD3-212ENST00000479958 PITPNM1O00562 1244 aa16.97■□□□□ 0.31
COMMD3-212ENST00000479958 CLEC11AQ9Y240 323 aa16.96■□□□□ 0.31
COMMD3-212ENST00000479958 FKBP8Q14318 412 aa16.95■□□□□ 0.3
COMMD3-212ENST00000479958 STAG3Q9UJ98 1225 aa16.87■□□□□ 0.29
COMMD3-212ENST00000479958 PRR29P0C7W0 189 aa16.8■□□□□ 0.28
COMMD3-212ENST00000479958 PROM2Q8N271 834 aa16.79■□□□□ 0.28
COMMD3-212ENST00000479958 FXR2P51116 673 aaKnown RBP eCLIP16.74■□□□□ 0.27
COMMD3-212ENST00000479958 PIP4P2Q8N4L2 257 aa16.71■□□□□ 0.27
COMMD3-212ENST00000479958 PRKAR2AP13861 404 aaKnown RBP16.6■□□□□ 0.25
COMMD3-212ENST00000479958 FBXO3Q9UK99 471 aa16.53■□□□□ 0.24
COMMD3-212ENST00000479958 CHADLQ6NUI6 762 aa16.49■□□□□ 0.23
COMMD3-212ENST00000479958 PLEKHG5O94827 1062 aa16.43■□□□□ 0.22
COMMD3-212ENST00000479958 CREBZFQ9NS37 354 aa16.42■□□□□ 0.22
COMMD3-212ENST00000479958 MIER1Q8N108 512 aa16.4■□□□□ 0.22
COMMD3-212ENST00000479958 FARP1Q9Y4F1 1045 aaPredicted RBP16.36■□□□□ 0.21
COMMD3-212ENST00000479958 PLCD3Q8N3E9 789 aa16.35■□□□□ 0.21
COMMD3-212ENST00000479958 HAX1O00165 279 aa16.34■□□□□ 0.21
COMMD3-212ENST00000479958 NPM1P06748 294 aaKnown RBP eCLIP16.28■□□□□ 0.2
COMMD3-212ENST00000479958 ZBTB47Q9UFB7 747 aaPredicted RBP16.23■□□□□ 0.19
COMMD3-212ENST00000479958 SP7Q8TDD2 431 aaPredicted RBP16.22■□□□□ 0.19
COMMD3-212ENST00000479958 VASPP50552 380 aaPredicted RBP16.19■□□□□ 0.18
COMMD3-212ENST00000479958 MNX1P50219 401 aaPredicted RBP16.18■□□□□ 0.18
COMMD3-212ENST00000479958 C19orf67A6NJJ6 358 aa16.17■□□□□ 0.18
COMMD3-212ENST00000479958 CD44P16070 742 aaKnown RBP16.11■□□□□ 0.17
COMMD3-212ENST00000479958 PAK3O75914 559 aaPredicted RBP16.09■□□□□ 0.17
COMMD3-212ENST00000479958 KLHL34Q8N239 644 aa16.09■□□□□ 0.17
COMMD3-212ENST00000479958 EVX2Q03828 476 aa16.02■□□□□ 0.16
COMMD3-212ENST00000479958 ZRANB1Q9UGI0 708 aa16■□□□□ 0.15
COMMD3-212ENST00000479958 IFNLR1Q8IU57 520 aaPredicted RBP15.93■□□□□ 0.14
COMMD3-212ENST00000479958 TSPYL2Q9H2G4 693 aaPredicted RBP15.93■□□□□ 0.14
COMMD3-212ENST00000479958 CLCN6P51797 869 aa15.91■□□□□ 0.14
COMMD3-212ENST00000479958 NUBP1P53384 320 aa15.9■□□□□ 0.14
COMMD3-212ENST00000479958 RASEFQ8IZ41 740 aa15.88■□□□□ 0.13
COMMD3-212ENST00000479958 ZNF579Q8NAF0 562 aaKnown RBP15.87■□□□□ 0.13
COMMD3-212ENST00000479958 SPOCK2Q92563 424 aa15.86■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms