RNA–Protein interactions for RNA: ENST00000463688.6

COMMD3-205, Transcript of COMM domain containing 3, humanhuman

TSL 5

Gene COMMD3, Length 1,407 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD3-205ENST00000463688 NISCHQ9Y2I1 1504 aa32.61■■■□□ 2.81
COMMD3-205ENST00000463688 CCDC180Q9P1Z9 1646 aa29.07■■■□□ 2.24
COMMD3-205ENST00000463688 ABCC9O60706 1549 aa28.65■■■□□ 2.18
COMMD3-205ENST00000463688 RB1CC1Q8TDY2 1594 aa27.58■■■□□ 2.01
COMMD3-205ENST00000463688 NACADO15069 1562 aa27.52■■■□□ 2
COMMD3-205ENST00000463688 DCAF8L2P0C7V8 631 aa27.47■■□□□ 1.99
COMMD3-205ENST00000463688 MYO15BQ96JP2 1530 aa27.34■■□□□ 1.97
COMMD3-205ENST00000463688 DCAF1Q9Y4B6 1507 aa27.08■■□□□ 1.93
COMMD3-205ENST00000463688 ZCCHC6Q5VYS8 1495 aaKnown RBP27.08■■□□□ 1.93
COMMD3-205ENST00000463688 PABPN1Q86U42 306 aaKnown RBP eCLIP26.78■■□□□ 1.88
COMMD3-205ENST00000463688 SHROOM4Q9ULL8 1493 aa26.61■■□□□ 1.85
COMMD3-205ENST00000463688 UNC13AQ9UPW8 1703 aa26.56■■□□□ 1.84
COMMD3-205ENST00000463688 BICRAQ9NZM4 1560 aa26.52■■□□□ 1.84
COMMD3-205ENST00000463688 DNAJC5BQ9UF47 199 aa26.45■■□□□ 1.82
COMMD3-205ENST00000463688 SCRIBQ14160 1630 aa26.4■■□□□ 1.82
COMMD3-205ENST00000463688 EIF4G1Q04637 1599 aaKnown RBP25.97■■□□□ 1.75
COMMD3-205ENST00000463688 CC2D2AQ9P2K1 1620 aa25.88■■□□□ 1.73
COMMD3-205ENST00000463688 CECR2Q9BXF3 1484 aa25.87■■□□□ 1.73
COMMD3-205ENST00000463688 NCAPD3P42695 1498 aa25.41■■□□□ 1.66
COMMD3-205ENST00000463688 BAZ1AQ9NRL2 1556 aaPredicted RBP25.36■■□□□ 1.65
COMMD3-205ENST00000463688 SMARCA2P51531 1590 aa25.34■■□□□ 1.65
COMMD3-205ENST00000463688 AEBP2Q6ZN18 517 aaPredicted RBP25.32■■□□□ 1.64
COMMD3-205ENST00000463688 ATAD2BQ9ULI0 1458 aa25.3■■□□□ 1.64
COMMD3-205ENST00000463688 SMARCA4P51532 1647 aa25.28■■□□□ 1.64
COMMD3-205ENST00000463688 HMGXB3Q12766 1538 aa25.19■■□□□ 1.62
COMMD3-205ENST00000463688 BAZ1BQ9UIG0 1483 aaKnown RBP25.12■■□□□ 1.61
COMMD3-205ENST00000463688 PEG3Q9GZU2 1588 aa25.11■■□□□ 1.61
COMMD3-205ENST00000463688 MROH2BQ7Z745 1585 aa25.02■■□□□ 1.6
COMMD3-205ENST00000463688 ERCC6Q03468 1493 aa24.89■■□□□ 1.57
COMMD3-205ENST00000463688 RSF1Q96T23 1441 aaPredicted RBP24.75■■□□□ 1.55
COMMD3-205ENST00000463688 LAMC3Q9Y6N6 1575 aa24.74■■□□□ 1.55
COMMD3-205ENST00000463688 CUX2O14529 1486 aa24.73■■□□□ 1.55
COMMD3-205ENST00000463688 PDS5BQ9NTI5 1447 aa24.73■■□□□ 1.55
COMMD3-205ENST00000463688 CADPSQ9ULU8 1353 aa24.67■■□□□ 1.54
COMMD3-205ENST00000463688 WIZO95785 1651 aa24.65■■□□□ 1.54
COMMD3-205ENST00000463688 NESP48681 1621 aa24.63■■□□□ 1.53
COMMD3-205ENST00000463688 TOP2AP11388 1531 aaKnown RBP24.55■■□□□ 1.52
COMMD3-205ENST00000463688 CHIC1Q5VXU3 224 aa24.53■■□□□ 1.52
COMMD3-205ENST00000463688 CFTRP13569 1480 aa24.42■■□□□ 1.5
COMMD3-205ENST00000463688 MRC2Q9UBG0 1479 aa24.35■■□□□ 1.49
COMMD3-205ENST00000463688 CEP164Q9UPV0 1460 aa24.34■■□□□ 1.49
COMMD3-205ENST00000463688 FANCD2Q9BXW9 1451 aa24.32■■□□□ 1.48
COMMD3-205ENST00000463688 THOC2Q8NI27 1593 aaKnown RBP24.31■■□□□ 1.48
COMMD3-205ENST00000463688 DNAJC5Q9H3Z4 198 aa24.27■■□□□ 1.48
COMMD3-205ENST00000463688 KIF21AQ7Z4S6 1674 aa24.26■■□□□ 1.47
COMMD3-205ENST00000463688 CCDC88BA6NC98 1476 aa24.25■■□□□ 1.47
COMMD3-205ENST00000463688 WDR62O43379 1518 aa24.21■■□□□ 1.47
COMMD3-205ENST00000463688 ABCC8Q09428 1581 aa24.08■■□□□ 1.44
COMMD3-205ENST00000463688 PRDM2Q13029 1718 aa23.99■■□□□ 1.43
COMMD3-205ENST00000463688 SUPT5HO00267 1087 aaKnown RBP23.98■■□□□ 1.43
COMMD3-205ENST00000463688 URB2Q14146 1524 aaKnown RBP23.97■■□□□ 1.43
COMMD3-205ENST00000463688 IFT140Q96RY7 1462 aa23.89■■□□□ 1.42
COMMD3-205ENST00000463688 TOPBP1Q92547 1522 aa23.84■■□□□ 1.41
COMMD3-205ENST00000463688 DNMBPQ6XZF7 1577 aa23.81■■□□□ 1.4
COMMD3-205ENST00000463688 OSCARQ8IYS5 282 aa23.76■■□□□ 1.39
COMMD3-205ENST00000463688 SOGA1O94964 1423 aa23.63■■□□□ 1.37
COMMD3-205ENST00000463688 POLA1P09884 1462 aaPredicted RBP23.63■■□□□ 1.37
COMMD3-205ENST00000463688 ZNF608Q9ULD9 1512 aaPredicted RBP23.59■■□□□ 1.37
COMMD3-205ENST00000463688 WDR97A6NE52 1622 aa23.55■■□□□ 1.36
COMMD3-205ENST00000463688 FGD5Q6ZNL6 1462 aa23.52■■□□□ 1.36
COMMD3-205ENST00000463688 TARBP1Q13395 1621 aaKnown RBP23.51■■□□□ 1.35
COMMD3-205ENST00000463688 CUX1P39880 1505 aa23.5■■□□□ 1.35
COMMD3-205ENST00000463688 AQRO60306 1485 aaKnown RBP eCLIP23.5■■□□□ 1.356e-7■■■■□ 24.7
COMMD3-205ENST00000463688 EIF4G3O43432 1585 aaKnown RBP23.47■■□□□ 1.35
COMMD3-205ENST00000463688 RAD54L2Q9Y4B4 1467 aa23.47■■□□□ 1.35
COMMD3-205ENST00000463688 TDRD9Q8NDG6 1382 aaKnown RBP23.45■■□□□ 1.35
COMMD3-205ENST00000463688 WRNQ14191 1432 aaPredicted RBP eCLIP23.45■■□□□ 1.34
COMMD3-205ENST00000463688 FBLN2P98095 1184 aa23.42■■□□□ 1.34
COMMD3-205ENST00000463688 GRIN2BQ13224 1484 aa23.4■■□□□ 1.34
COMMD3-205ENST00000463688 CHMP7Q8WUX9 453 aaPredicted RBP23.4■■□□□ 1.34
COMMD3-205ENST00000463688 MAGI1Q96QZ7 1491 aaPredicted RBP23.37■■□□□ 1.33
COMMD3-205ENST00000463688 ABCA10Q8WWZ4 1543 aa23.35■■□□□ 1.33
COMMD3-205ENST00000463688 GAPVD1Q14C86 1478 aa23.33■■□□□ 1.33
COMMD3-205ENST00000463688 TRIM41Q8WV44 630 aa23.3■■□□□ 1.32
COMMD3-205ENST00000463688 TOP2BQ02880 1626 aa23.29■■□□□ 1.32
COMMD3-205ENST00000463688 SNAPC4Q5SXM2 1469 aa23.28■■□□□ 1.32
COMMD3-205ENST00000463688 SYNJ2O15056 1496 aa23.26■■□□□ 1.31
COMMD3-205ENST00000463688 BIVM-ERCC5R4GMW8 1640 aa23.22■■□□□ 1.31
COMMD3-205ENST00000463688 SYNJ1O43426 1573 aa23.18■■□□□ 1.3
COMMD3-205ENST00000463688 CHD1O14646 1710 aa23.14■■□□□ 1.29
COMMD3-205ENST00000463688 ABCA5Q8WWZ7 1642 aa23.14■■□□□ 1.29
COMMD3-205ENST00000463688 ARHGEF11O15085 1522 aa23.14■■□□□ 1.29
COMMD3-205ENST00000463688 FHAD1B1AJZ9 1412 aa23.11■■□□□ 1.29
COMMD3-205ENST00000463688 ERICH3Q5RHP9 1530 aa23.1■■□□□ 1.29
COMMD3-205ENST00000463688 RIMBP3CA6NJZ7 1639 aa23.08■■□□□ 1.29
COMMD3-205ENST00000463688 RIMBP3BA6NNM3 1639 aa23.08■■□□□ 1.29
COMMD3-205ENST00000463688 RIMBP3Q9UFD9 1639 aa23.08■■□□□ 1.29
COMMD3-205ENST00000463688 PBRM1Q86U86 1689 aa23.07■■□□□ 1.28
COMMD3-205ENST00000463688 CYB5RLQ6IPT4 315 aa23.07■■□□□ 1.28
COMMD3-205ENST00000463688 KIF27Q86VH2 1401 aa23.04■■□□□ 1.28
COMMD3-205ENST00000463688 GRIN2AQ12879 1464 aa23.02■■□□□ 1.28
COMMD3-205ENST00000463688 CLASP1Q7Z460 1538 aa23.01■■□□□ 1.27
COMMD3-205ENST00000463688 ADAMTS12P58397 1594 aa22.96■■□□□ 1.27
COMMD3-205ENST00000463688 NUP160Q12769 1436 aa22.94■■□□□ 1.26
COMMD3-205ENST00000463688 ARAP1Q96P48 1450 aa22.89■■□□□ 1.26
COMMD3-205ENST00000463688 IGF1RP08069 1367 aa22.88■■□□□ 1.25
COMMD3-205ENST00000463688 JPH4Q96JJ6 628 aa22.82■■□□□ 1.24
COMMD3-205ENST00000463688 CARMIL1Q5VZK9 1371 aa22.79■■□□□ 1.24
COMMD3-205ENST00000463688 CUL7Q14999 1698 aa22.79■■□□□ 1.24
COMMD3-205ENST00000463688 CEP170Q5SW79 1584 aa22.78■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms