RNA–Protein interactions for RNA: ENST00000553290.1

ACTN1-207, Transcript of actinin alpha 1, humanhuman

TSL 5

Gene ACTN1, Length 619 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN1-207ENST00000553290 NISCHQ9Y2I1 1504 aa31.93■■■□□ 2.7
ACTN1-207ENST00000553290 CCDC180Q9P1Z9 1646 aa28.53■■■□□ 2.16
ACTN1-207ENST00000553290 ABCC9O60706 1549 aa28.17■■■□□ 2.1
ACTN1-207ENST00000553290 RB1CC1Q8TDY2 1594 aa27.01■■□□□ 1.91
ACTN1-207ENST00000553290 NACADO15069 1562 aa26.9■■□□□ 1.9
ACTN1-207ENST00000553290 DCAF8L2P0C7V8 631 aa26.8■■□□□ 1.88
ACTN1-207ENST00000553290 MYO15BQ96JP2 1530 aa26.65■■□□□ 1.86
ACTN1-207ENST00000553290 ZCCHC6Q5VYS8 1495 aaKnown RBP26.52■■□□□ 1.84
ACTN1-207ENST00000553290 DCAF1Q9Y4B6 1507 aa26.42■■□□□ 1.82
ACTN1-207ENST00000553290 UNC13AQ9UPW8 1703 aa26.36■■□□□ 1.81
ACTN1-207ENST00000553290 PABPN1Q86U42 306 aaKnown RBP eCLIP26.27■■□□□ 1.8
ACTN1-207ENST00000553290 BICRAQ9NZM4 1560 aa26.16■■□□□ 1.78
ACTN1-207ENST00000553290 DNAJC5BQ9UF47 199 aa26.12■■□□□ 1.77
ACTN1-207ENST00000553290 SCRIBQ14160 1630 aa25.97■■□□□ 1.75
ACTN1-207ENST00000553290 SHROOM4Q9ULL8 1493 aa25.91■■□□□ 1.74
ACTN1-207ENST00000553290 EIF4G1Q04637 1599 aaKnown RBP25.51■■□□□ 1.67
ACTN1-207ENST00000553290 CC2D2AQ9P2K1 1620 aa25.48■■□□□ 1.67
ACTN1-207ENST00000553290 CECR2Q9BXF3 1484 aa25.36■■□□□ 1.65
ACTN1-207ENST00000553290 SMARCA4P51532 1647 aa24.83■■□□□ 1.57
ACTN1-207ENST00000553290 NCAPD3P42695 1498 aa24.83■■□□□ 1.56
ACTN1-207ENST00000553290 ATAD2BQ9ULI0 1458 aa24.78■■□□□ 1.56
ACTN1-207ENST00000553290 BAZ1AQ9NRL2 1556 aaPredicted RBP24.78■■□□□ 1.56
ACTN1-207ENST00000553290 SMARCA2P51531 1590 aa24.76■■□□□ 1.55
ACTN1-207ENST00000553290 HMGXB3Q12766 1538 aa24.67■■□□□ 1.54
ACTN1-207ENST00000553290 PEG3Q9GZU2 1588 aa24.61■■□□□ 1.53
ACTN1-207ENST00000553290 MROH2BQ7Z745 1585 aa24.59■■□□□ 1.53
ACTN1-207ENST00000553290 BAZ1BQ9UIG0 1483 aaKnown RBP24.57■■□□□ 1.52
ACTN1-207ENST00000553290 ERCC6Q03468 1493 aa24.32■■□□□ 1.48
ACTN1-207ENST00000553290 WIZO95785 1651 aa24.3■■□□□ 1.48
ACTN1-207ENST00000553290 NESP48681 1621 aa24.28■■□□□ 1.48
ACTN1-207ENST00000553290 LAMC3Q9Y6N6 1575 aa24.22■■□□□ 1.47
ACTN1-207ENST00000553290 RSF1Q96T23 1441 aaPredicted RBP24.2■■□□□ 1.46
ACTN1-207ENST00000553290 CUX2O14529 1486 aa24.19■■□□□ 1.46
ACTN1-207ENST00000553290 CADPSQ9ULU8 1353 aa24.08■■□□□ 1.45
ACTN1-207ENST00000553290 PDS5BQ9NTI5 1447 aa24.08■■□□□ 1.44
ACTN1-207ENST00000553290 TOP2AP11388 1531 aaKnown RBP24.04■■□□□ 1.44
ACTN1-207ENST00000553290 KIF21AQ7Z4S6 1674 aa24■■□□□ 1.43
ACTN1-207ENST00000553290 THOC2Q8NI27 1593 aaKnown RBP23.99■■□□□ 1.43
ACTN1-207ENST00000553290 CFTRP13569 1480 aa23.87■■□□□ 1.41
ACTN1-207ENST00000553290 MRC2Q9UBG0 1479 aa23.82■■□□□ 1.4
ACTN1-207ENST00000553290 CEP164Q9UPV0 1460 aa23.81■■□□□ 1.4
ACTN1-207ENST00000553290 FANCD2Q9BXW9 1451 aa23.8■■□□□ 1.4
ACTN1-207ENST00000553290 DNAJC5Q9H3Z4 198 aa23.79■■□□□ 1.4
ACTN1-207ENST00000553290 CCDC88BA6NC98 1476 aa23.76■■□□□ 1.39
ACTN1-207ENST00000553290 WDR62O43379 1518 aa23.75■■□□□ 1.39
ACTN1-207ENST00000553290 PRDM2Q13029 1718 aa23.67■■□□□ 1.38
ACTN1-207ENST00000553290 URB2Q14146 1524 aaKnown RBP23.56■■□□□ 1.36
ACTN1-207ENST00000553290 ABCC8Q09428 1581 aa23.4■■□□□ 1.34
ACTN1-207ENST00000553290 TOPBP1Q92547 1522 aa23.38■■□□□ 1.33
ACTN1-207ENST00000553290 SUPT5HO00267 1087 aaKnown RBP23.37■■□□□ 1.33
ACTN1-207ENST00000553290 DNMBPQ6XZF7 1577 aa23.33■■□□□ 1.33
ACTN1-207ENST00000553290 IFT140Q96RY7 1462 aa23.32■■□□□ 1.32
ACTN1-207ENST00000553290 ZNF608Q9ULD9 1512 aaPredicted RBP23.21■■□□□ 1.31
ACTN1-207ENST00000553290 POLA1P09884 1462 aaPredicted RBP23.16■■□□□ 1.3
ACTN1-207ENST00000553290 TARBP1Q13395 1621 aaKnown RBP23.15■■□□□ 1.3
ACTN1-207ENST00000553290 OSCARQ8IYS5 282 aa23.14■■□□□ 1.29
ACTN1-207ENST00000553290 EIF4G3O43432 1585 aaKnown RBP23.11■■□□□ 1.29
ACTN1-207ENST00000553290 CUX1P39880 1505 aa23.08■■□□□ 1.29
ACTN1-207ENST00000553290 SOGA1O94964 1423 aa23.08■■□□□ 1.28
ACTN1-207ENST00000553290 AQRO60306 1485 aaKnown RBP eCLIP23.05■■□□□ 1.287e-7■■■■□ 19.7
ACTN1-207ENST00000553290 FGD5Q6ZNL6 1462 aa23.05■■□□□ 1.28
ACTN1-207ENST00000553290 RAD54L2Q9Y4B4 1467 aa23.05■■□□□ 1.28
ACTN1-207ENST00000553290 WDR97A6NE52 1622 aa22.98■■□□□ 1.27
ACTN1-207ENST00000553290 TDRD9Q8NDG6 1382 aaKnown RBP22.96■■□□□ 1.27
ACTN1-207ENST00000553290 CHD1O14646 1710 aa22.88■■□□□ 1.25
ACTN1-207ENST00000553290 TRIM41Q8WV44 630 aa22.86■■□□□ 1.25
ACTN1-207ENST00000553290 FBLN2P98095 1184 aa22.85■■□□□ 1.25
ACTN1-207ENST00000553290 WRNQ14191 1432 aaPredicted RBP eCLIP22.84■■□□□ 1.25
ACTN1-207ENST00000553290 ABCA10Q8WWZ4 1543 aa22.84■■□□□ 1.25
ACTN1-207ENST00000553290 GRIN2BQ13224 1484 aa22.84■■□□□ 1.25
ACTN1-207ENST00000553290 SNAPC4Q5SXM2 1469 aa22.83■■□□□ 1.25
ACTN1-207ENST00000553290 TOP2BQ02880 1626 aa22.82■■□□□ 1.24
ACTN1-207ENST00000553290 BIVM-ERCC5R4GMW8 1640 aa22.82■■□□□ 1.24
ACTN1-207ENST00000553290 MAGI1Q96QZ7 1491 aaPredicted RBP22.81■■□□□ 1.24
ACTN1-207ENST00000553290 GAPVD1Q14C86 1478 aa22.8■■□□□ 1.24
ACTN1-207ENST00000553290 SYNJ1O43426 1573 aa22.77■■□□□ 1.24
ACTN1-207ENST00000553290 RIMBP3CA6NJZ7 1639 aa22.77■■□□□ 1.24
ACTN1-207ENST00000553290 RIMBP3BA6NNM3 1639 aa22.77■■□□□ 1.24
ACTN1-207ENST00000553290 RIMBP3Q9UFD9 1639 aa22.77■■□□□ 1.24
ACTN1-207ENST00000553290 CHMP7Q8WUX9 453 aaPredicted RBP22.76■■□□□ 1.23
ACTN1-207ENST00000553290 PBRM1Q86U86 1689 aa22.76■■□□□ 1.23
ACTN1-207ENST00000553290 ABCA5Q8WWZ7 1642 aa22.75■■□□□ 1.23
ACTN1-207ENST00000553290 ARHGEF11O15085 1522 aa22.74■■□□□ 1.23
ACTN1-207ENST00000553290 SYNJ2O15056 1496 aa22.73■■□□□ 1.23
ACTN1-207ENST00000553290 CLASP1Q7Z460 1538 aa22.63■■□□□ 1.21
ACTN1-207ENST00000553290 ERICH3Q5RHP9 1530 aa22.57■■□□□ 1.2
ACTN1-207ENST00000553290 ADAMTS12P58397 1594 aa22.56■■□□□ 1.2
ACTN1-207ENST00000553290 CYB5RLQ6IPT4 315 aa22.56■■□□□ 1.2
ACTN1-207ENST00000553290 GRIN2AQ12879 1464 aa22.54■■□□□ 1.2
ACTN1-207ENST00000553290 FHAD1B1AJZ9 1412 aa22.53■■□□□ 1.2
ACTN1-207ENST00000553290 ARAP1Q96P48 1450 aa22.53■■□□□ 1.2
ACTN1-207ENST00000553290 NUP160Q12769 1436 aa22.45■■□□□ 1.18
ACTN1-207ENST00000553290 CEP170Q5SW79 1584 aa22.42■■□□□ 1.18
ACTN1-207ENST00000553290 KIF27Q86VH2 1401 aa22.4■■□□□ 1.18
ACTN1-207ENST00000553290 IGF1RP08069 1367 aa22.34■■□□□ 1.17
ACTN1-207ENST00000553290 SHROOM2Q13796 1616 aa22.31■■□□□ 1.16
ACTN1-207ENST00000553290 CUL7Q14999 1698 aa22.3■■□□□ 1.16
ACTN1-207ENST00000553290 ERCC6L2Q5T890 1561 aa22.27■■□□□ 1.16
ACTN1-207ENST00000553290 JPH4Q96JJ6 628 aa22.24■■□□□ 1.15
ACTN1-207ENST00000553290 RUSC2Q8N2Y8 1516 aa22.23■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms