RNA–Protein interactions for RNA: ENST00000300648.6

GCN1-201, Transcript of GCN1, eIF2 alpha kinase activator homolog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene GCN1, Length 8,675 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GCN1-201ENST00000300648 PELP1Q8IZL8 1130 aaKnown RBP18.61■□□□□ 0.57
GCN1-201ENST00000300648 NISCHQ9Y2I1 1504 aa18.2■□□□□ 0.5
GCN1-201ENST00000300648 DCAF8L2P0C7V8 631 aa18.15■□□□□ 0.5
GCN1-201ENST00000300648 MYT1Q01538 1121 aa18.05■□□□□ 0.48
GCN1-201ENST00000300648 CCER1Q8TC90 406 aaPredicted RBP17.67■□□□□ 0.42
GCN1-201ENST00000300648 SUPT5HO00267 1087 aaKnown RBP17.52■□□□□ 0.4
GCN1-201ENST00000300648 CENPBP07199 599 aaPredicted RBP17.48■□□□□ 0.39
GCN1-201ENST00000300648 APLP2Q06481 763 aa17.47■□□□□ 0.39
GCN1-201ENST00000300648 ERICH6Q7L0X2 663 aa17.43■□□□□ 0.38
GCN1-201ENST00000300648 FAM9AQ8IZU1 332 aaPredicted RBP17.42■□□□□ 0.38
GCN1-201ENST00000300648 ZEB1P37275 1124 aaPredicted RBP17.41■□□□□ 0.38
GCN1-201ENST00000300648 NEFLP07196 543 aa17.05■□□□□ 0.32
GCN1-201ENST00000300648 YTHDC1Q96MU7 727 aaKnown RBP17.04■□□□□ 0.32
GCN1-201ENST00000300648 SHROOM4Q9ULL8 1493 aa16.95■□□□□ 0.3
GCN1-201ENST00000300648 TTBK1Q5TCY1 1321 aaPredicted RBP16.92■□□□□ 0.3
GCN1-201ENST00000300648 PCGF6Q9BYE7 350 aa16.86■□□□□ 0.29
GCN1-201ENST00000300648 EHMT2Q96KQ7 1210 aa16.68■□□□□ 0.26
GCN1-201ENST00000300648 DAXXQ9UER7 740 aaPredicted RBP16.68■□□□□ 0.26
GCN1-201ENST00000300648 TRIM41Q8WV44 630 aa16.5■□□□□ 0.23
GCN1-201ENST00000300648 TRIM26Q12899 539 aaPredicted RBP16.38■□□□□ 0.21
GCN1-201ENST00000300648 RTL5Q5HYW3 569 aaPredicted RBP16.37■□□□□ 0.21
GCN1-201ENST00000300648 UBTFP17480 764 aaKnown RBP16.33■□□□□ 0.2
GCN1-201ENST00000300648 ZNF316A6NFI3 1004 aaPredicted RBP16.23■□□□□ 0.19
GCN1-201ENST00000300648 HRCP23327 699 aa16.23■□□□□ 0.19
GCN1-201ENST00000300648 ATP1B4Q9UN42 357 aaPredicted RBP16.19■□□□□ 0.18
GCN1-201ENST00000300648 RANGAP1P46060 587 aaPredicted RBP16.06■□□□□ 0.16
GCN1-201ENST00000300648 CLSPNQ9HAW4 1339 aa15.99■□□□□ 0.15
GCN1-201ENST00000300648 MYT1LQ9UL68 1186 aa15.92■□□□□ 0.14
GCN1-201ENST00000300648 DIEXFQ68CQ4 756 aaKnown RBP15.9■□□□□ 0.14
GCN1-201ENST00000300648 GLIPR1L2Q4G1C9 344 aa15.87■□□□□ 0.13
GCN1-201ENST00000300648 CDK11AQ9UQ88 783 aaPredicted RBP15.84■□□□□ 0.13
GCN1-201ENST00000300648 ZBTB47Q9UFB7 747 aaPredicted RBP15.77■□□□□ 0.11
GCN1-201ENST00000300648 POLR3GLQ9BT43 218 aa15.76■□□□□ 0.11
GCN1-201ENST00000300648 ANP32AP39687 249 aaKnown RBP15.7■□□□□ 0.1
GCN1-201ENST00000300648 ANP32BQ92688 251 aaKnown RBP15.7■□□□□ 0.1
GCN1-201ENST00000300648 ANP32CO43423 234 aa15.67■□□□□ 0.1
GCN1-201ENST00000300648 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.63■□□□□ 0.09
GCN1-201ENST00000300648 ITGAEP38570 1179 aa15.63■□□□□ 0.09
GCN1-201ENST00000300648 HNRNPUL2Q1KMD3 747 aaKnown RBP15.63■□□□□ 0.09
GCN1-201ENST00000300648 CCDC180Q9P1Z9 1646 aa15.6■□□□□ 0.09
GCN1-201ENST00000300648 PPARGC1BQ86YN6 1023 aaKnown RBP15.57■□□□□ 0.08
GCN1-201ENST00000300648 GTF3C3Q9Y5Q9 886 aa15.56■□□□□ 0.08
GCN1-201ENST00000300648 NEFMP07197 916 aa15.56■□□□□ 0.08
GCN1-201ENST00000300648 SLC4A1APQ9BWU0 796 aaKnown RBP15.55■□□□□ 0.08
GCN1-201ENST00000300648 CHIC1Q5VXU3 224 aa15.55■□□□□ 0.08
GCN1-201ENST00000300648 CANXP27824 592 aaKnown RBP15.49■□□□□ 0.07
GCN1-201ENST00000300648 UPF2Q9HAU5 1272 aaKnown RBP15.47■□□□□ 0.07
GCN1-201ENST00000300648 ACIN1Q9UKV3 1341 aaKnown RBP15.43■□□□□ 0.06
GCN1-201ENST00000300648 FAM50AQ14320 339 aaKnown RBP15.4■□□□□ 0.06
GCN1-201ENST00000300648 EIF5BO60841 1220 aaKnown RBP15.37■□□□□ 0.05
GCN1-201ENST00000300648 TRIM52Q96A61 297 aa15.36■□□□□ 0.05
GCN1-201ENST00000300648 LOC105371045A0A1W2PR82 267 aa15.35■□□□□ 0.05
GCN1-201ENST00000300648 HSP90AA1P07900 732 aaKnown RBP15.35■□□□□ 0.05
GCN1-201ENST00000300648 ANP32EQ9BTT0 268 aa15.34■□□□□ 0.05
GCN1-201ENST00000300648 CNGB1Q14028 1251 aaPredicted RBP15.32■□□□□ 0.04
GCN1-201ENST00000300648 BCANQ96GW7 911 aa15.31■□□□□ 0.04
GCN1-201ENST00000300648 NEUROD1Q13562 356 aa15.25■□□□□ 0.03
GCN1-201ENST00000300648 DCAF1Q9Y4B6 1507 aa15.23■□□□□ 0.03
GCN1-201ENST00000300648 GOLGA6L2Q8N9W4 650 aaPredicted RBP15.22■□□□□ 0.03
GCN1-201ENST00000300648 TNNT2P45379 298 aaPredicted RBP15.21■□□□□ 0.03
GCN1-201ENST00000300648 ABCC9O60706 1549 aa15.2■□□□□ 0.02
GCN1-201ENST00000300648 DDRGK1Q96HY6 314 aa15.14■□□□□ 0.01
GCN1-201ENST00000300648 TONSLQ96HA7 1378 aa15.13■□□□□ 0.01
GCN1-201ENST00000300648 ZNF326Q5BKZ1 582 aaKnown RBP15.13■□□□□ 0.01
GCN1-201ENST00000300648 NPM2Q86SE8 214 aaKnown RBP15.11■□□□□ 0.01
GCN1-201ENST00000300648 BECN1Q14457 450 aa15.1■□□□□ 0.01
GCN1-201ENST00000300648 ZCCHC6Q5VYS8 1495 aaKnown RBP15.08■□□□□ 0
GCN1-201ENST00000300648 CDK11BP21127 795 aaKnown RBP15.07■□□□□ 0
GCN1-201ENST00000300648 FKBP8Q14318 412 aa15.06■□□□□ 0
GCN1-201ENST00000300648 GOLGA6L22H0YM25 854 aa15.05■□□□□ 0
GCN1-201ENST00000300648 TRIM44Q96DX7 344 aaPredicted RBP15.05■□□□□ 0
GCN1-201ENST00000300648 CCDC136Q96JN2 1154 aa15.05■□□□□ 0
GCN1-201ENST00000300648 RB1CC1Q8TDY2 1594 aa15.03■□□□□ -0
GCN1-201ENST00000300648 EEA1Q15075 1411 aa15.03■□□□□ -0
GCN1-201ENST00000300648 SLC24A1O60721 1099 aa15.03■□□□□ -0
GCN1-201ENST00000300648 MYH16Q9H6N6 1097 aa15.01□□□□□ -0.01
GCN1-201ENST00000300648 ERICH6BQ5W0A0 696 aa15.01□□□□□ -0.01
GCN1-201ENST00000300648 CSRNP3Q8WYN3 585 aa15□□□□□ -0.01
GCN1-201ENST00000300648 HNRNPUQ00839 825 aaKnown RBP eCLIP15□□□□□ -0.01
GCN1-201ENST00000300648 NCLP19338 710 aaKnown RBP14.98□□□□□ -0.01
GCN1-201ENST00000300648 NACADO15069 1562 aa14.95□□□□□ -0.02
GCN1-201ENST00000300648 ESF1Q9H501 851 aaKnown RBP14.94□□□□□ -0.02
GCN1-201ENST00000300648 SCRIBQ14160 1630 aa14.94□□□□□ -0.02
GCN1-201ENST00000300648 TMC1Q8TDI8 760 aa14.92□□□□□ -0.02
GCN1-201ENST00000300648 PPM1GO15355 546 aaPredicted RBP14.91□□□□□ -0.02
GCN1-201ENST00000300648 WDR43Q15061 677 aaKnown RBP eCLIP14.9□□□□□ -0.02
GCN1-201ENST00000300648 NBR1Q14596 966 aa14.9□□□□□ -0.02
GCN1-201ENST00000300648 ZRSR1Q15695 479 aaKnown RBP14.86□□□□□ -0.03
GCN1-201ENST00000300648 CASC1Q6TDU7 716 aa14.85□□□□□ -0.03
GCN1-201ENST00000300648 NPM1P06748 294 aaKnown RBP eCLIP14.85□□□□□ -0.03
GCN1-201ENST00000300648 BCL11AQ9H165 835 aa14.85□□□□□ -0.03
GCN1-201ENST00000300648 GOLGA6L6A8MZA4 724 aa14.85□□□□□ -0.03
GCN1-201ENST00000300648 PABPN1Q86U42 306 aaKnown RBP eCLIP14.84□□□□□ -0.037e-7■■■□□ 16.2
GCN1-201ENST00000300648 RSF1Q96T23 1441 aaPredicted RBP14.83□□□□□ -0.03
GCN1-201ENST00000300648 NRDCO43847 1150 aa14.83□□□□□ -0.04
GCN1-201ENST00000300648 CHMP4BQ9H444 224 aaKnown RBP14.81□□□□□ -0.04
GCN1-201ENST00000300648 FBLN2P98095 1184 aa14.81□□□□□ -0.04
GCN1-201ENST00000300648 FAM9BQ8IZU0 186 aa14.79□□□□□ -0.04
GCN1-201ENST00000300648 MRS2Q9HD23 443 aa14.78□□□□□ -0.04
GCN1-201ENST00000300648 PTMAP06454 111 aaKnown RBP14.78□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms