RNA–Protein interactions for RNA: ENST00000242776.8

DDX39A-201, Transcript of DExD-box helicase 39A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene DDX39A, Length 1,471 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX39A-201ENST00000242776 NISCHQ9Y2I1 1504 aa34.91■■■■□ 3.18
DDX39A-201ENST00000242776 ABCC9O60706 1549 aa31.98■■■□□ 2.71
DDX39A-201ENST00000242776 CCDC180Q9P1Z9 1646 aa31.46■■■□□ 2.63
DDX39A-201ENST00000242776 DNAJC5BQ9UF47 199 aa30.31■■■□□ 2.44
DDX39A-201ENST00000242776 RB1CC1Q8TDY2 1594 aa30.16■■■□□ 2.42
DDX39A-201ENST00000242776 DCAF8L2P0C7V8 631 aa29.87■■■□□ 2.37
DDX39A-201ENST00000242776 NACADO15069 1562 aa29.82■■■□□ 2.36
DDX39A-201ENST00000242776 PABPN1Q86U42 306 aaKnown RBP eCLIP29.76■■■□□ 2.351e-10■■■■■ 41
DDX39A-201ENST00000242776 UNC13AQ9UPW8 1703 aa29.6■■■□□ 2.33
DDX39A-201ENST00000242776 BICRAQ9NZM4 1560 aa29.32■■■□□ 2.28
DDX39A-201ENST00000242776 MYO15BQ96JP2 1530 aa29.15■■■□□ 2.26
DDX39A-201ENST00000242776 ZCCHC6Q5VYS8 1495 aaKnown RBP28.84■■■□□ 2.21
DDX39A-201ENST00000242776 CC2D2AQ9P2K1 1620 aa28.82■■■□□ 2.2
DDX39A-201ENST00000242776 SCRIBQ14160 1630 aa28.82■■■□□ 2.2
DDX39A-201ENST00000242776 CECR2Q9BXF3 1484 aa28.77■■■□□ 2.2
DDX39A-201ENST00000242776 DCAF1Q9Y4B6 1507 aa28.7■■■□□ 2.18
DDX39A-201ENST00000242776 SHROOM4Q9ULL8 1493 aa28.69■■■□□ 2.18
DDX39A-201ENST00000242776 EIF4G1Q04637 1599 aaKnown RBP28.63■■■□□ 2.17
DDX39A-201ENST00000242776 DNAJC5Q9H3Z4 198 aa28■■■□□ 2.07
DDX39A-201ENST00000242776 ERCC6Q03468 1493 aa27.62■■■□□ 2.01
DDX39A-201ENST00000242776 CUX2O14529 1486 aa27.56■■■□□ 2
DDX39A-201ENST00000242776 NCAPD3P42695 1498 aa27.51■■□□□ 1.99
DDX39A-201ENST00000242776 ATAD2BQ9ULI0 1458 aa27.44■■□□□ 1.98
DDX39A-201ENST00000242776 NESP48681 1621 aa27.37■■□□□ 1.97
DDX39A-201ENST00000242776 SMARCA4P51532 1647 aa27.36■■□□□ 1.97
DDX39A-201ENST00000242776 SMARCA2P51531 1590 aa27.32■■□□□ 1.96
DDX39A-201ENST00000242776 HMGXB3Q12766 1538 aa27.28■■□□□ 1.96
DDX39A-201ENST00000242776 BAZ1BQ9UIG0 1483 aaKnown RBP27.19■■□□□ 1.94
DDX39A-201ENST00000242776 BAZ1AQ9NRL2 1556 aaPredicted RBP27.12■■□□□ 1.93
DDX39A-201ENST00000242776 THOC2Q8NI27 1593 aaKnown RBP27.09■■□□□ 1.93
DDX39A-201ENST00000242776 KIF21AQ7Z4S6 1674 aa27.02■■□□□ 1.92
DDX39A-201ENST00000242776 LAMC3Q9Y6N6 1575 aa26.99■■□□□ 1.91
DDX39A-201ENST00000242776 PEG3Q9GZU2 1588 aa26.98■■□□□ 1.91
DDX39A-201ENST00000242776 MROH2BQ7Z745 1585 aa26.97■■□□□ 1.91
DDX39A-201ENST00000242776 PDS5BQ9NTI5 1447 aa26.85■■□□□ 1.89
DDX39A-201ENST00000242776 TRIM41Q8WV44 630 aa26.82■■□□□ 1.88
DDX39A-201ENST00000242776 CADPSQ9ULU8 1353 aa26.7■■□□□ 1.86
DDX39A-201ENST00000242776 WIZO95785 1651 aa26.69■■□□□ 1.86
DDX39A-201ENST00000242776 MRC2Q9UBG0 1479 aa26.68■■□□□ 1.86
DDX39A-201ENST00000242776 WDR62O43379 1518 aa26.6■■□□□ 1.85
DDX39A-201ENST00000242776 CEP164Q9UPV0 1460 aa26.52■■□□□ 1.84
DDX39A-201ENST00000242776 FANCD2Q9BXW9 1451 aa26.46■■□□□ 1.83
DDX39A-201ENST00000242776 OSCARQ8IYS5 282 aa26.3■■□□□ 1.8
DDX39A-201ENST00000242776 CFTRP13569 1480 aa26.3■■□□□ 1.8
DDX39A-201ENST00000242776 URB2Q14146 1524 aaKnown RBP26.27■■□□□ 1.8
DDX39A-201ENST00000242776 RSF1Q96T23 1441 aaPredicted RBP26.23■■□□□ 1.79
DDX39A-201ENST00000242776 TOP2AP11388 1531 aaKnown RBP26.22■■□□□ 1.79
DDX39A-201ENST00000242776 PRDM2Q13029 1718 aa26.11■■□□□ 1.77
DDX39A-201ENST00000242776 RIMBP3CA6NJZ7 1639 aa26.07■■□□□ 1.76
DDX39A-201ENST00000242776 RIMBP3BA6NNM3 1639 aa26.07■■□□□ 1.76
DDX39A-201ENST00000242776 RIMBP3Q9UFD9 1639 aa26.07■■□□□ 1.76
DDX39A-201ENST00000242776 ZNF608Q9ULD9 1512 aaPredicted RBP26.04■■□□□ 1.76
DDX39A-201ENST00000242776 CCDC88BA6NC98 1476 aa25.96■■□□□ 1.75
DDX39A-201ENST00000242776 IFT140Q96RY7 1462 aa25.96■■□□□ 1.75
DDX39A-201ENST00000242776 TOPBP1Q92547 1522 aa25.91■■□□□ 1.74
DDX39A-201ENST00000242776 ARHGEF11O15085 1522 aa25.9■■□□□ 1.74
DDX39A-201ENST00000242776 EIF4G3O43432 1585 aaKnown RBP25.86■■□□□ 1.73
DDX39A-201ENST00000242776 CYB5RLQ6IPT4 315 aa25.81■■□□□ 1.72
DDX39A-201ENST00000242776 CHD1O14646 1710 aa25.81■■□□□ 1.72
DDX39A-201ENST00000242776 DNMBPQ6XZF7 1577 aa25.77■■□□□ 1.72
DDX39A-201ENST00000242776 AQRO60306 1485 aaKnown RBP eCLIP25.76■■□□□ 1.711e-7■■■■■ 30.6
DDX39A-201ENST00000242776 FBLN2P98095 1184 aa25.75■■□□□ 1.71
DDX39A-201ENST00000242776 ABCC8Q09428 1581 aa25.73■■□□□ 1.71
DDX39A-201ENST00000242776 TARBP1Q13395 1621 aaKnown RBP25.7■■□□□ 1.7
DDX39A-201ENST00000242776 TRHP20396 242 aaPredicted RBP25.69■■□□□ 1.7
DDX39A-201ENST00000242776 ARAP1Q96P48 1450 aa25.63■■□□□ 1.69
DDX39A-201ENST00000242776 POLA1P09884 1462 aaPredicted RBP25.61■■□□□ 1.69
DDX39A-201ENST00000242776 RAD54L2Q9Y4B4 1467 aa25.6■■□□□ 1.69
DDX39A-201ENST00000242776 TDRD9Q8NDG6 1382 aaKnown RBP25.55■■□□□ 1.68
DDX39A-201ENST00000242776 SOGA1O94964 1423 aa25.51■■□□□ 1.67
DDX39A-201ENST00000242776 SNAPC4Q5SXM2 1469 aa25.48■■□□□ 1.67
DDX39A-201ENST00000242776 FGD5Q6ZNL6 1462 aa25.43■■□□□ 1.66
DDX39A-201ENST00000242776 CHMP7Q8WUX9 453 aaPredicted RBP25.41■■□□□ 1.66
DDX39A-201ENST00000242776 CLASP1Q7Z460 1538 aa25.38■■□□□ 1.65
DDX39A-201ENST00000242776 CUX1P39880 1505 aa25.35■■□□□ 1.65
DDX39A-201ENST00000242776 SYNJ1O43426 1573 aa25.35■■□□□ 1.65
DDX39A-201ENST00000242776 MAGI1Q96QZ7 1491 aaPredicted RBP25.3■■□□□ 1.64
DDX39A-201ENST00000242776 WDR97A6NE52 1622 aa25.3■■□□□ 1.64
DDX39A-201ENST00000242776 GRIN2BQ13224 1484 aa25.29■■□□□ 1.64
DDX39A-201ENST00000242776 PBRM1Q86U86 1689 aa25.27■■□□□ 1.64
DDX39A-201ENST00000242776 SYNJ2O15056 1496 aa25.25■■□□□ 1.63
DDX39A-201ENST00000242776 AEBP2Q6ZN18 517 aaPredicted RBP25.2■■□□□ 1.62
DDX39A-201ENST00000242776 GAPVD1Q14C86 1478 aa25.18■■□□□ 1.62
DDX39A-201ENST00000242776 ABCA5Q8WWZ7 1642 aa25.09■■□□□ 1.61
DDX39A-201ENST00000242776 ERCC6L2Q5T890 1561 aa25.07■■□□□ 1.6
DDX39A-201ENST00000242776 ABCA10Q8WWZ4 1543 aa25.05■■□□□ 1.6
DDX39A-201ENST00000242776 SUPT5HO00267 1087 aaKnown RBP24.99■■□□□ 1.59
DDX39A-201ENST00000242776 GRIN2AQ12879 1464 aa24.99■■□□□ 1.59
DDX39A-201ENST00000242776 CEP170Q5SW79 1584 aa24.96■■□□□ 1.59
DDX39A-201ENST00000242776 ADAMTS12P58397 1594 aa24.94■■□□□ 1.58
DDX39A-201ENST00000242776 WRNQ14191 1432 aaPredicted RBP eCLIP24.9■■□□□ 1.581e-9■■■■■ 51
DDX39A-201ENST00000242776 NUP160Q12769 1436 aa24.87■■□□□ 1.57
DDX39A-201ENST00000242776 BIVM-ERCC5R4GMW8 1640 aa24.82■■□□□ 1.56
DDX39A-201ENST00000242776 SHROOM2Q13796 1616 aa24.82■■□□□ 1.56
DDX39A-201ENST00000242776 FHAD1B1AJZ9 1412 aa24.81■■□□□ 1.56
DDX39A-201ENST00000242776 TOP2BQ02880 1626 aa24.81■■□□□ 1.56
DDX39A-201ENST00000242776 KIF13AQ9H1H9 1805 aa24.79■■□□□ 1.56
DDX39A-201ENST00000242776 PRG4Q92954 1404 aaPredicted RBP24.74■■□□□ 1.55
DDX39A-201ENST00000242776 ERICH3Q5RHP9 1530 aa24.72■■□□□ 1.55
DDX39A-201ENST00000242776 JPH4Q96JJ6 628 aa24.68■■□□□ 1.54
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms