RNA–Protein interactions for RNA: ENST00000538280.1

DDB1-211, Transcript of damage specific DNA binding protein 1, humanhuman

TSL 3

Gene DDB1, Length 227 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDB1-211ENST00000538280 NISCHQ9Y2I1 1504 aa20.27■□□□□ 0.83
DDB1-211ENST00000538280 ABCC9O60706 1549 aa18.53■□□□□ 0.56
DDB1-211ENST00000538280 CCDC180Q9P1Z9 1646 aa18.33■□□□□ 0.52
DDB1-211ENST00000538280 DNAJC5BQ9UF47 199 aa17.56■□□□□ 0.4
DDB1-211ENST00000538280 RB1CC1Q8TDY2 1594 aa17.49■□□□□ 0.39
DDB1-211ENST00000538280 UNC13AQ9UPW8 1703 aa17.3■□□□□ 0.36
DDB1-211ENST00000538280 NACADO15069 1562 aa17.29■□□□□ 0.36
DDB1-211ENST00000538280 PABPN1Q86U42 306 aaKnown RBP eCLIP17.16■□□□□ 0.34
DDB1-211ENST00000538280 BICRAQ9NZM4 1560 aa17.11■□□□□ 0.33
DDB1-211ENST00000538280 DCAF8L2P0C7V8 631 aa17.06■□□□□ 0.32
DDB1-211ENST00000538280 ZCCHC6Q5VYS8 1495 aaKnown RBP16.95■□□□□ 0.3
DDB1-211ENST00000538280 MYO15BQ96JP2 1530 aa16.95■□□□□ 0.3
DDB1-211ENST00000538280 CC2D2AQ9P2K1 1620 aa16.75■□□□□ 0.27
DDB1-211ENST00000538280 SCRIBQ14160 1630 aa16.74■□□□□ 0.27
DDB1-211ENST00000538280 DCAF1Q9Y4B6 1507 aa16.68■□□□□ 0.26
DDB1-211ENST00000538280 SHROOM4Q9ULL8 1493 aa16.67■□□□□ 0.26
DDB1-211ENST00000538280 CECR2Q9BXF3 1484 aa16.67■□□□□ 0.26
DDB1-211ENST00000538280 EIF4G1Q04637 1599 aaKnown RBP16.64■□□□□ 0.25
DDB1-211ENST00000538280 DNAJC5Q9H3Z4 198 aa16.16■□□□□ 0.18
DDB1-211ENST00000538280 SUPT5HO00267 1087 aaKnown RBP16.07■□□□□ 0.16
DDB1-211ENST00000538280 CUX2O14529 1486 aa15.97■□□□□ 0.15
DDB1-211ENST00000538280 NCAPD3P42695 1498 aa15.95■□□□□ 0.14
DDB1-211ENST00000538280 ERCC6Q03468 1493 aa15.93■□□□□ 0.14
DDB1-211ENST00000538280 ATAD2BQ9ULI0 1458 aa15.91■□□□□ 0.14
DDB1-211ENST00000538280 SMARCA4P51532 1647 aa15.91■□□□□ 0.14
DDB1-211ENST00000538280 NESP48681 1621 aa15.9■□□□□ 0.14
DDB1-211ENST00000538280 HMGXB3Q12766 1538 aa15.87■□□□□ 0.13
DDB1-211ENST00000538280 SMARCA2P51531 1590 aa15.83■□□□□ 0.12
DDB1-211ENST00000538280 THOC2Q8NI27 1593 aaKnown RBP15.82■□□□□ 0.12
DDB1-211ENST00000538280 KIF21AQ7Z4S6 1674 aa15.74■□□□□ 0.11
DDB1-211ENST00000538280 BAZ1BQ9UIG0 1483 aaKnown RBP15.74■□□□□ 0.11
DDB1-211ENST00000538280 CHIC1Q5VXU3 224 aa15.73■□□□□ 0.11
DDB1-211ENST00000538280 PEG3Q9GZU2 1588 aa15.72■□□□□ 0.11
DDB1-211ENST00000538280 BAZ1AQ9NRL2 1556 aaPredicted RBP15.72■□□□□ 0.11
DDB1-211ENST00000538280 RSF1Q96T23 1441 aaPredicted RBP15.69■□□□□ 0.1
DDB1-211ENST00000538280 MROH2BQ7Z745 1585 aa15.67■□□□□ 0.1
DDB1-211ENST00000538280 LAMC3Q9Y6N6 1575 aa15.66■□□□□ 0.1
DDB1-211ENST00000538280 WIZO95785 1651 aa15.51■□□□□ 0.07
DDB1-211ENST00000538280 PDS5BQ9NTI5 1447 aa15.49■□□□□ 0.07
DDB1-211ENST00000538280 WDR62O43379 1518 aa15.48■□□□□ 0.07
DDB1-211ENST00000538280 MRC2Q9UBG0 1479 aa15.46■□□□□ 0.07
DDB1-211ENST00000538280 CADPSQ9ULU8 1353 aa15.43■□□□□ 0.06
DDB1-211ENST00000538280 TRIM41Q8WV44 630 aa15.4■□□□□ 0.06
DDB1-211ENST00000538280 CEP164Q9UPV0 1460 aa15.35■□□□□ 0.05
DDB1-211ENST00000538280 FANCD2Q9BXW9 1451 aa15.32■□□□□ 0.04
DDB1-211ENST00000538280 URB2Q14146 1524 aaKnown RBP15.27■□□□□ 0.04
DDB1-211ENST00000538280 TOP2AP11388 1531 aaKnown RBP15.26■□□□□ 0.03
DDB1-211ENST00000538280 CFTRP13569 1480 aa15.26■□□□□ 0.03
DDB1-211ENST00000538280 PRDM2Q13029 1718 aa15.23■□□□□ 0.03
DDB1-211ENST00000538280 RIMBP3CA6NJZ7 1639 aa15.16■□□□□ 0.02
DDB1-211ENST00000538280 RIMBP3BA6NNM3 1639 aa15.16■□□□□ 0.02
DDB1-211ENST00000538280 RIMBP3Q9UFD9 1639 aa15.16■□□□□ 0.02
DDB1-211ENST00000538280 ZNF608Q9ULD9 1512 aaPredicted RBP15.12■□□□□ 0.01
DDB1-211ENST00000538280 OSCARQ8IYS5 282 aa15.1■□□□□ 0.01
DDB1-211ENST00000538280 LOC105371045A0A1W2PR82 267 aa15.08■□□□□ 0
DDB1-211ENST00000538280 CCDC88BA6NC98 1476 aa15.07■□□□□ 0
DDB1-211ENST00000538280 EIF4G3O43432 1585 aaKnown RBP15.07■□□□□ 0
DDB1-211ENST00000538280 ARHGEF11O15085 1522 aa15.04■□□□□ -0
DDB1-211ENST00000538280 CHD1O14646 1710 aa15.03■□□□□ -0
DDB1-211ENST00000538280 TOPBP1Q92547 1522 aa15.03■□□□□ -0
DDB1-211ENST00000538280 IFT140Q96RY7 1462 aa15.02■□□□□ -0
DDB1-211ENST00000538280 TARBP1Q13395 1621 aaKnown RBP14.97□□□□□ -0.01
DDB1-211ENST00000538280 DNMBPQ6XZF7 1577 aa14.96□□□□□ -0.01
DDB1-211ENST00000538280 ABCC8Q09428 1581 aa14.9□□□□□ -0.02
DDB1-211ENST00000538280 AQRO60306 1485 aaKnown RBP eCLIP14.9□□□□□ -0.022e-11■■■■■ 30.7
DDB1-211ENST00000538280 ARAP1Q96P48 1450 aa14.9□□□□□ -0.02
DDB1-211ENST00000538280 HRCP23327 699 aa14.89□□□□□ -0.03
DDB1-211ENST00000538280 POLA1P09884 1462 aaPredicted RBP14.87□□□□□ -0.03
DDB1-211ENST00000538280 PCGF6Q9BYE7 350 aa14.85□□□□□ -0.03
DDB1-211ENST00000538280 RAD54L2Q9Y4B4 1467 aa14.83□□□□□ -0.03
DDB1-211ENST00000538280 CYB5RLQ6IPT4 315 aa14.82□□□□□ -0.04
DDB1-211ENST00000538280 FAM9AQ8IZU1 332 aaPredicted RBP14.8□□□□□ -0.04
DDB1-211ENST00000538280 TRIM26Q12899 539 aaPredicted RBP14.79□□□□□ -0.04
DDB1-211ENST00000538280 EEA1Q15075 1411 aa14.79□□□□□ -0.04
DDB1-211ENST00000538280 CLASP1Q7Z460 1538 aa14.79□□□□□ -0.04
DDB1-211ENST00000538280 SNAPC4Q5SXM2 1469 aa14.77□□□□□ -0.04
DDB1-211ENST00000538280 WDR97A6NE52 1622 aa14.77□□□□□ -0.05
DDB1-211ENST00000538280 FGD5Q6ZNL6 1462 aa14.75□□□□□ -0.05
DDB1-211ENST00000538280 TDRD9Q8NDG6 1382 aaKnown RBP14.74□□□□□ -0.05
DDB1-211ENST00000538280 FBLN2P98095 1184 aa14.74□□□□□ -0.05
DDB1-211ENST00000538280 CUX1P39880 1505 aa14.73□□□□□ -0.05
DDB1-211ENST00000538280 WRNQ14191 1432 aaPredicted RBP eCLIP14.73□□□□□ -0.05
DDB1-211ENST00000538280 PBRM1Q86U86 1689 aa14.72□□□□□ -0.05
DDB1-211ENST00000538280 SYNJ1O43426 1573 aa14.72□□□□□ -0.05
DDB1-211ENST00000538280 SOGA1O94964 1423 aa14.71□□□□□ -0.05
DDB1-211ENST00000538280 TRHP20396 242 aaPredicted RBP14.69□□□□□ -0.06
DDB1-211ENST00000538280 MAGI1Q96QZ7 1491 aaPredicted RBP14.65□□□□□ -0.06
DDB1-211ENST00000538280 BIVM-ERCC5R4GMW8 1640 aa14.64□□□□□ -0.07
DDB1-211ENST00000538280 KIF21BO75037 1637 aa14.63□□□□□ -0.07
DDB1-211ENST00000538280 TNIKQ9UKE5 1360 aa14.63□□□□□ -0.07
DDB1-211ENST00000538280 RUSC2Q8N2Y8 1516 aa14.63□□□□□ -0.07
DDB1-211ENST00000538280 GRIN2BQ13224 1484 aa14.63□□□□□ -0.07
DDB1-211ENST00000538280 TOP2BQ02880 1626 aa14.63□□□□□ -0.07
DDB1-211ENST00000538280 ABCA5Q8WWZ7 1642 aa14.63□□□□□ -0.07
DDB1-211ENST00000538280 SYNJ2O15056 1496 aa14.62□□□□□ -0.07
DDB1-211ENST00000538280 ERCC6L2Q5T890 1561 aa14.61□□□□□ -0.07
DDB1-211ENST00000538280 GOLGA3Q08378 1498 aa14.6□□□□□ -0.07
DDB1-211ENST00000538280 CSRNP3Q8WYN3 585 aa14.58□□□□□ -0.08
DDB1-211ENST00000538280 CEP162Q5TB80 1403 aa14.58□□□□□ -0.08
DDB1-211ENST00000538280 GAPVD1Q14C86 1478 aa14.57□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms