RNA–Protein interactions for RNA: ENST00000456711.5

COMMD3-204, Transcript of COMM domain containing 3, humanhuman

TSL 3

Gene COMMD3, Length 748 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD3-204ENST00000456711 AEBP2Q6ZN18 517 aaPredicted RBP31.43■■■□□ 2.62
COMMD3-204ENST00000456711 CHIC1Q5VXU3 224 aa29.17■■■□□ 2.26
COMMD3-204ENST00000456711 SENP3Q9H4L4 574 aaPredicted RBP26.75■■□□□ 1.87
COMMD3-204ENST00000456711 PHF23Q9BUL5 403 aaPredicted RBP26.37■■□□□ 1.81
COMMD3-204ENST00000456711 FOXD1Q16676 465 aa25.13■■□□□ 1.61
COMMD3-204ENST00000456711 POTEDQ86YR6 584 aa24.42■■□□□ 1.5
COMMD3-204ENST00000456711 MSH5O43196 834 aa23.65■■□□□ 1.38
COMMD3-204ENST00000456711 PIAS4Q8N2W9 510 aaPredicted RBP23.26■■□□□ 1.31
COMMD3-204ENST00000456711 PPP6R1Q9UPN7 881 aa23.01■■□□□ 1.27
COMMD3-204ENST00000456711 ADRA2BP18089 450 aa22.87■■□□□ 1.25
COMMD3-204ENST00000456711 PLPPR3Q6T4P5 718 aa22.82■■□□□ 1.24
COMMD3-204ENST00000456711 MAPK8IP2Q13387 824 aaPredicted RBP21.26■□□□□ 0.99
COMMD3-204ENST00000456711 DMRT2Q9Y5R5 561 aa21.14■□□□□ 0.97
COMMD3-204ENST00000456711 CACNB1Q02641 598 aaPredicted RBP20.79■□□□□ 0.92
COMMD3-204ENST00000456711 SCAF1Q9H7N4 1312 aaKnown RBP20.73■□□□□ 0.91
COMMD3-204ENST00000456711 DCAF8L1A6NGE4 600 aa20.33■□□□□ 0.85
COMMD3-204ENST00000456711 RNF39Q9H2S5 420 aa20.2■□□□□ 0.82
COMMD3-204ENST00000456711 HOXD11P31277 338 aaPredicted RBP20.08■□□□□ 0.81
COMMD3-204ENST00000456711 PPP4R3CPQ6ZMV5 832 aa19.97■□□□□ 0.79
COMMD3-204ENST00000456711 C1QBPQ07021 282 aaKnown RBP19.79■□□□□ 0.76
COMMD3-204ENST00000456711 RNF216Q9NWF9 866 aaPredicted RBP19.71■□□□□ 0.75
COMMD3-204ENST00000456711 CNKSR2Q8WXI2 1034 aa19.7■□□□□ 0.74
COMMD3-204ENST00000456711 DNAJC5BQ9UF47 199 aa19.42■□□□□ 0.7
COMMD3-204ENST00000456711 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.11■□□□□ 0.65
COMMD3-204ENST00000456711 POTEHQ6S545 545 aa18.96■□□□□ 0.63
COMMD3-204ENST00000456711 NCBP3Q53F19 620 aaKnown RBP18.87■□□□□ 0.61
COMMD3-204ENST00000456711 NPM3O75607 178 aaKnown RBP18.74■□□□□ 0.59
COMMD3-204ENST00000456711 U3KPZ7 1027 aaPredicted RBP18.7■□□□□ 0.58
COMMD3-204ENST00000456711 DSG3P32926 999 aa18.69■□□□□ 0.58
COMMD3-204ENST00000456711 SPINK5Q9NQ38 1064 aaPredicted RBP18.68■□□□□ 0.58
COMMD3-204ENST00000456711 CAPN15O75808 1086 aa18.6■□□□□ 0.57
COMMD3-204ENST00000456711 ABCB7O75027 752 aa18.18■□□□□ 0.5
COMMD3-204ENST00000456711 TRHP20396 242 aaPredicted RBP18.16■□□□□ 0.5
COMMD3-204ENST00000456711 SLC4A2P04920 1241 aa18.12■□□□□ 0.49
COMMD3-204ENST00000456711 ZNF219Q9P2Y4 722 aaPredicted RBP18■□□□□ 0.47
COMMD3-204ENST00000456711 APLP2Q06481 763 aa17.88■□□□□ 0.45
COMMD3-204ENST00000456711 KCNA4P22459 653 aa17.79■□□□□ 0.44
COMMD3-204ENST00000456711 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.74■□□□□ 0.43
COMMD3-204ENST00000456711 HNRNPUL2Q1KMD3 747 aaKnown RBP17.74■□□□□ 0.43
COMMD3-204ENST00000456711 CHRDL2Q6WN34 429 aa17.71■□□□□ 0.43
COMMD3-204ENST00000456711 RBM42Q9BTD8 480 aaKnown RBP17.71■□□□□ 0.43
COMMD3-204ENST00000456711 SAMD1Q6SPF0 538 aaPredicted RBP17.66■□□□□ 0.42
COMMD3-204ENST00000456711 POLA2Q14181 598 aa17.5■□□□□ 0.39
COMMD3-204ENST00000456711 SP7Q8TDD2 431 aaPredicted RBP17.43■□□□□ 0.38
COMMD3-204ENST00000456711 MYCNP04198 464 aaPredicted RBP17.27■□□□□ 0.36
COMMD3-204ENST00000456711 AKT1S1Q96B36 256 aa17.21■□□□□ 0.35
COMMD3-204ENST00000456711 PIP4P2Q8N4L2 257 aa17.18■□□□□ 0.34
COMMD3-204ENST00000456711 REM2Q8IYK8 340 aaPredicted RBP17.12■□□□□ 0.33
COMMD3-204ENST00000456711 ATF5Q9Y2D1 282 aaPredicted RBP17.1■□□□□ 0.33
COMMD3-204ENST00000456711 HAX1O00165 279 aa17.02■□□□□ 0.32
COMMD3-204ENST00000456711 OSCARQ8IYS5 282 aa17.01■□□□□ 0.31
COMMD3-204ENST00000456711 PITPNM1O00562 1244 aa16.97■□□□□ 0.31
COMMD3-204ENST00000456711 ZBTB12Q9Y330 459 aaPredicted RBP16.95■□□□□ 0.3
COMMD3-204ENST00000456711 FXR2P51116 673 aaKnown RBP eCLIP16.93■□□□□ 0.3
COMMD3-204ENST00000456711 EVX2Q03828 476 aa16.89■□□□□ 0.29
COMMD3-204ENST00000456711 FOXD4L1Q9NU39 408 aa16.73■□□□□ 0.27
COMMD3-204ENST00000456711 SLC4A1APQ9BWU0 796 aaKnown RBP16.58■□□□□ 0.24
COMMD3-204ENST00000456711 NISCHQ9Y2I1 1504 aa16.55■□□□□ 0.24
COMMD3-204ENST00000456711 PRKAR2AP13861 404 aaKnown RBP16.5■□□□□ 0.23
COMMD3-204ENST00000456711 SPDYE2BA6NHP3 402 aa16.43■□□□□ 0.22
COMMD3-204ENST00000456711 SPDYE6P0CI01 402 aa16.43■□□□□ 0.22
COMMD3-204ENST00000456711 SPDYE2Q495Y8 402 aa16.43■□□□□ 0.22
COMMD3-204ENST00000456711 C19orf67A6NJJ6 358 aa16.42■□□□□ 0.22
COMMD3-204ENST00000456711 ZBTB22O15209 634 aa16.4■□□□□ 0.22
COMMD3-204ENST00000456711 CLEC11AQ9Y240 323 aa16.4■□□□□ 0.22
COMMD3-204ENST00000456711 GABBR2O75899 941 aa16.37■□□□□ 0.21
COMMD3-204ENST00000456711 LHX8Q68G74 356 aa16.34■□□□□ 0.21
COMMD3-204ENST00000456711 SPDYE1Q8NFV5 336 aaPredicted RBP16.32■□□□□ 0.2
COMMD3-204ENST00000456711 FBLN2P98095 1184 aa16.28■□□□□ 0.2
COMMD3-204ENST00000456711 MKRN4PQ13434 485 aaPredicted RBP16.24■□□□□ 0.19
COMMD3-204ENST00000456711 CHADLQ6NUI6 762 aa16.23■□□□□ 0.19
COMMD3-204ENST00000456711 ATXN8OSP0DMR3 200 aa16.21■□□□□ 0.19
COMMD3-204ENST00000456711 SSUH2Q9Y2M2 353 aa16.19■□□□□ 0.18
COMMD3-204ENST00000456711 ZNF692Q9BU19 519 aaPredicted RBP16.16■□□□□ 0.18
COMMD3-204ENST00000456711 POTEIP0CG38 1075 aa16.09■□□□□ 0.17
COMMD3-204ENST00000456711 ABCC9O60706 1549 aa16.08■□□□□ 0.16
COMMD3-204ENST00000456711 PRR29P0C7W0 189 aa15.98■□□□□ 0.15
COMMD3-204ENST00000456711 PABPN1Q86U42 306 aaKnown RBP eCLIP15.93■□□□□ 0.14
COMMD3-204ENST00000456711 CD44P16070 742 aaKnown RBP15.92■□□□□ 0.14
COMMD3-204ENST00000456711 PLSCR2Q9NRY7 297 aa15.92■□□□□ 0.14
COMMD3-204ENST00000456711 FARP1Q9Y4F1 1045 aaPredicted RBP15.84■□□□□ 0.13
COMMD3-204ENST00000456711 DCBLD2Q96PD2 775 aa15.72■□□□□ 0.11
COMMD3-204ENST00000456711 CLCN6P51797 869 aa15.67■□□□□ 0.1
COMMD3-204ENST00000456711 ZNF579Q8NAF0 562 aaKnown RBP15.63■□□□□ 0.09
COMMD3-204ENST00000456711 OTUD5Q96G74 571 aa15.6■□□□□ 0.09
COMMD3-204ENST00000456711 ZRANB1Q9UGI0 708 aa15.59■□□□□ 0.09
COMMD3-204ENST00000456711 POTEB2H3BUK9 544 aa15.56■□□□□ 0.08
COMMD3-204ENST00000456711 GALR2O43603 387 aaPredicted RBP15.56■□□□□ 0.08
COMMD3-204ENST00000456711 CREBZFQ9NS37 354 aa15.49■□□□□ 0.07
COMMD3-204ENST00000456711 POTEMA6NI47 508 aa15.44■□□□□ 0.06
COMMD3-204ENST00000456711 POTEGQ6S5H5 508 aa15.37■□□□□ 0.05
COMMD3-204ENST00000456711 PHF12Q96QT6 1004 aa15.37■□□□□ 0.05
COMMD3-204ENST00000456711 PELP1Q8IZL8 1130 aaKnown RBP15.36■□□□□ 0.05
COMMD3-204ENST00000456711 CCDC180Q9P1Z9 1646 aa15.25■□□□□ 0.03
COMMD3-204ENST00000456711 DNAJC5Q9H3Z4 198 aa15.25■□□□□ 0.03
COMMD3-204ENST00000456711 POTEJP0CG39 1038 aa15.23■□□□□ 0.03
COMMD3-204ENST00000456711 STAG3Q9UJ98 1225 aa15.21■□□□□ 0.03
COMMD3-204ENST00000456711 PAK3O75914 559 aaPredicted RBP15.2■□□□□ 0.02
COMMD3-204ENST00000456711 METRNQ9UJH8 293 aa15.16■□□□□ 0.02
COMMD3-204ENST00000456711 MNX1P50219 401 aaPredicted RBP15.15■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms