Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 PCK1-201ENST00000319441 4341 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.682e-7■□□□□ 10.5
YBX3P16989 PCK1-202ENST00000467047 5074 ntTSL 1 (best)10.77□□□□□ -0.682e-7■□□□□ 10.5
YBX3P16989 NMT1-204ENST00000587014 773 ntTSL 1 (best)16.76■□□□□ 0.272e-11■□□□□ 10.5
YBX3P16989 YIF1B-206ENST00000586319 936 ntTSL 322.5■■□□□ 1.192e-14■□□□□ 10.5
YBX3P16989 RPL27-202ENST00000586277 460 ntTSL 311.77□□□□□ -0.531e-20■□□□□ 10.5
YBX3P16989 RPS4X-203ENST00000470671 610 ntTSL 34.29□□□□□ -1.721e-323■□□□□ 10.5
YBX3P16989 MVD-213ENST00000566636 863 ntTSL 326.59■■□□□ 1.855e-12■□□□□ 10.5
YBX3P16989 MVD-203ENST00000562651 908 ntTSL 226.57■■□□□ 1.845e-12■□□□□ 10.5
YBX3P16989 IFRD2-206ENST00000462001 891 ntTSL 226.31■■□□□ 1.83e-8■□□□□ 10.5
YBX3P16989 PCNP-207ENST00000498274 786 ntTSL 225.61■■□□□ 1.693e-8■□□□□ 10.5
YBX3P16989 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC21.74■■□□□ 1.073e-8■□□□□ 10.5
YBX3P16989 IFRD2-214ENST00000489569 1036 ntTSL 521.32■■□□□ 13e-8■□□□□ 10.5
YBX3P16989 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.883e-8■□□□□ 10.5
YBX3P16989 IFRD2-201ENST00000414734 1137 ntTSL 220.26■□□□□ 0.833e-8■□□□□ 10.5
YBX3P16989 IFRD2-210ENST00000474556 1812 ntTSL 520.04■□□□□ 0.83e-8■□□□□ 10.5
YBX3P16989 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.529e-7■□□□□ 10.5
YBX3P16989 PCNP-205ENST00000470490 589 ntTSL 518.08■□□□□ 0.483e-8■□□□□ 10.5
YBX3P16989 SENP2-202ENST00000413407 2383 ntTSL 218■□□□□ 0.479e-7■□□□□ 10.5
YBX3P16989 RAP1GAP-211ENST00000495204 2489 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.095e-8■□□□□ 10.5
YBX3P16989 PCNP-206ENST00000486406 742 ntTSL 29.83□□□□□ -0.843e-8■□□□□ 10.5
YBX3P16989 PCNP-208ENST00000627393 136 ntTSL 2 BASIC5.31□□□□□ -1.563e-8■□□□□ 10.5
YBX3P16989 MPP1-208ENST00000439370 2066 ntTSL 514.89□□□□□ -0.039e-18■□□□□ 10.5
YBX3P16989 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.292e-6■□□□□ 10.5
YBX3P16989 NCAPD2-212ENST00000542492 1052 ntTSL 517.03■□□□□ 0.324e-8■□□□□ 10.5
YBX3P16989 PRIM1-204ENST00000549549 456 ntTSL 311.82□□□□□ -0.522e-7■□□□□ 10.5
YBX3P16989 CORO1B-208ENST00000545736 1037 ntTSL 225.86■■□□□ 1.732e-9■□□□□ 10.5
YBX3P16989 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC25.86■■□□□ 1.732e-9■□□□□ 10.5
YBX3P16989 CORO1B-203ENST00000453768 1161 ntTSL 225.86■■□□□ 1.732e-9■□□□□ 10.5
YBX3P16989 CORO1B-204ENST00000537042 1954 ntTSL 522.42■■□□□ 1.182e-9■□□□□ 10.5
YBX3P16989 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.062e-9■□□□□ 10.5
YBX3P16989 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.912e-9■□□□□ 10.5
YBX3P16989 CORO1B-207ENST00000545016 551 ntTSL 415.09■□□□□ 0.012e-9■□□□□ 10.5
YBX3P16989 CORO1B-209ENST00000616321 4464 ntTSL 213.57□□□□□ -0.242e-9■□□□□ 10.5
YBX3P16989 CDT1-202ENST00000562747 735 ntTSL 222.48■■□□□ 1.191e-11■□□□□ 10.5
YBX3P16989 SEC61A1-204ENST00000481210 521 ntTSL 57.96□□□□□ -1.143e-9■□□□□ 10.5
YBX3P16989 XPR1-201ENST00000367589 4126 ntTSL 1 (best) BASIC14.47□□□□□ -0.096e-7■□□□□ 10.5
YBX3P16989 XPR1-202ENST00000367590 8474 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.686e-7■□□□□ 10.5
YBX3P16989 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC31.51■■■□□ 2.636e-7■□□□□ 10.5
YBX3P16989 AL590094.1-207ENST00000443802 712 ntTSL 330.05■■■□□ 2.46e-7■□□□□ 10.5
YBX3P16989 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC25.78■■□□□ 1.726e-7■□□□□ 10.5
YBX3P16989 AL590094.1-208ENST00000636917 627 ntTSL 5 BASIC16.94■□□□□ 0.36e-7■□□□□ 10.5
YBX3P16989 AL590094.1-209ENST00000637260 499 ntTSL 5 BASIC16.63■□□□□ 0.256e-7■□□□□ 10.5
YBX3P16989 AL590094.1-206ENST00000635959 478 ntTSL 5 BASIC16.63■□□□□ 0.256e-7■□□□□ 10.5
YBX3P16989 AL590094.1-204ENST00000455680 2986 ntTSL 1 (best)14.81□□□□□ -0.046e-7■□□□□ 10.5
YBX3P16989 AL590094.1-205ENST00000606660 2786 ntTSL 214.36□□□□□ -0.116e-7■□□□□ 10.5
YBX3P16989 AL590094.1-203ENST00000435649 828 ntTSL 5 BASIC11.81□□□□□ -0.526e-7■□□□□ 10.5
YBX3P16989 TKT-209ENST00000466765 693 ntTSL 223.31■■□□□ 1.322e-16■□□□□ 10.5
YBX3P16989 RNPEP-212ENST00000492587 780 ntTSL 527.71■■■□□ 2.032e-7■□□□□ 10.5
YBX3P16989 CBFB-203ENST00000561924 584 ntTSL 5 BASIC27.57■■■□□ 22e-6■□□□□ 10.5
YBX3P16989 NEDD1-208ENST00000555806 565 ntTSL 424.43■■□□□ 1.53e-8■□□□□ 10.5
YBX3P16989 NEDD1-209ENST00000557092 554 ntTSL 424.43■■□□□ 1.53e-8■□□□□ 10.5
YBX3P16989 NEDD1-210ENST00000557400 604 ntTSL 523.7■■□□□ 1.383e-8■□□□□ 10.5
YBX3P16989 PTPN7-209ENST00000477554 1432 ntAPPRIS ALT2 TSL 223.29■■□□□ 1.323e-8■□□□□ 10.5
YBX3P16989 NEDD1-212ENST00000557478 595 ntTSL 523.14■■□□□ 1.293e-8■□□□□ 10.5
YBX3P16989 NXF1-206ENST00000527902 619 ntTSL 322.71■■□□□ 1.233e-8■□□□□ 10.5
YBX3P16989 RNPEP-209ENST00000479726 822 ntTSL 522.3■■□□□ 1.162e-7■□□□□ 10.5
YBX3P16989 NEDD1-207ENST00000555114 731 ntTSL 321.4■■□□□ 1.023e-8■□□□□ 10.5
YBX3P16989 PCYT1A-202ENST00000411591 1084 ntTSL 320.55■□□□□ 0.883e-8■□□□□ 10.5
YBX3P16989 PCYT1A-209ENST00000441879 724 ntTSL 320.52■□□□□ 0.883e-8■□□□□ 10.5
YBX3P16989 PCYT1A-211ENST00000444822 724 ntTSL 320.52■□□□□ 0.883e-8■□□□□ 10.5
YBX3P16989 NEDD1-205ENST00000553609 581 ntTSL 320.04■□□□□ 0.83e-8■□□□□ 10.5
YBX3P16989 NEDD1-206ENST00000554226 582 ntTSL 219.83■□□□□ 0.773e-8■□□□□ 10.5
YBX3P16989 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC19.03■□□□□ 0.643e-8■□□□□ 10.5
YBX3P16989 PCYT1A-214ENST00000473978 1430 ntTSL 1 (best)18.91■□□□□ 0.623e-8■□□□□ 10.5
YBX3P16989 PTPN7-203ENST00000435759 575 ntTSL 418.77■□□□□ 0.63e-8■□□□□ 10.5
YBX3P16989 PCYT1A-212ENST00000460677 1393 ntTSL 1 (best)18.53■□□□□ 0.563e-8■□□□□ 10.5
YBX3P16989 PTPN7-212ENST00000480836 1189 ntTSL 218.47■□□□□ 0.553e-8■□□□□ 10.5
YBX3P16989 PTPN7-215ENST00000492451 560 ntTSL 518.08■□□□□ 0.483e-8■□□□□ 10.5
YBX3P16989 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC18.03■□□□□ 0.482e-6■□□□□ 10.5
YBX3P16989 NXF1-214ENST00000533048 922 ntTSL 517.8■□□□□ 0.443e-8■□□□□ 10.5
YBX3P16989 AC069257.3-201ENST00000431391 708 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.313e-8■□□□□ 10.5
YBX3P16989 RNPEP-203ENST00000447312 1166 ntTSL 516.81■□□□□ 0.282e-7■□□□□ 10.5
YBX3P16989 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.262e-6■□□□□ 10.5
YBX3P16989 TSN-208ENST00000490104 2717 ntTSL 216.51■□□□□ 0.231e-6■□□□□ 10.5
YBX3P16989 PTPN7-210ENST00000477625 673 ntTSL 516.16■□□□□ 0.183e-8■□□□□ 10.5
YBX3P16989 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.113e-8■□□□□ 10.5
YBX3P16989 RNPEP-210ENST00000481780 847 ntTSL 515.72■□□□□ 0.112e-7■□□□□ 10.5
YBX3P16989 PTPN7-216ENST00000492977 1595 ntTSL 1 (best)15.64■□□□□ 0.093e-8■□□□□ 10.5
YBX3P16989 PTPN7-206ENST00000467283 577 ntTSL 415.63■□□□□ 0.093e-8■□□□□ 10.5
YBX3P16989 PTPN7-214ENST00000491584 573 ntTSL 215.63■□□□□ 0.093e-8■□□□□ 10.5
YBX3P16989 PTPN7-205ENST00000464870 542 ntTSL 415.58■□□□□ 0.083e-8■□□□□ 10.5
YBX3P16989 NEDD1-202ENST00000411739 2490 ntTSL 2 BASIC15.44■□□□□ 0.063e-8■□□□□ 10.5
YBX3P16989 PCYT1A-206ENST00000431016 1482 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.053e-8■□□□□ 10.5
YBX3P16989 PCYT1A-215ENST00000488235 466 ntTSL 315.32■□□□□ 0.043e-8■□□□□ 10.5
YBX3P16989 PCYT1A-216ENST00000491544 589 ntTSL 315.3■□□□□ 0.043e-8■□□□□ 10.5
YBX3P16989 TSN-204ENST00000467324 2843 ntTSL 515.19■□□□□ 0.021e-6■□□□□ 10.5
YBX3P16989 NXF1-201ENST00000294172 2346 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -03e-8■□□□□ 10.5
YBX3P16989 PTPN7-211ENST00000479092 545 ntTSL 515.01□□□□□ -0.013e-8■□□□□ 10.5
YBX3P16989 NXF1-213ENST00000532297 2795 ntAPPRIS P1 TSL 5 BASIC14.98□□□□□ -0.013e-8■□□□□ 10.5
YBX3P16989 PTPN7-213ENST00000486116 551 ntTSL 414.53□□□□□ -0.083e-8■□□□□ 10.5
YBX3P16989 NEDD1-211ENST00000557454 564 ntTSL 414.4□□□□□ -0.13e-8■□□□□ 10.5
YBX3P16989 RNPEP-207ENST00000478617 1069 ntTSL 514.4□□□□□ -0.12e-7■□□□□ 10.5
YBX3P16989 PTPN7-219ENST00000629151 437 ntTSL 5 BASIC14.18□□□□□ -0.143e-8■□□□□ 10.5
YBX3P16989 TSN-212ENST00000536142 3328 ntTSL 2 BASIC14.04□□□□□ -0.161e-6■□□□□ 10.5
YBX3P16989 LIX1L-201ENST00000604000 3975 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.196e-12■□□□□ 10.5
YBX3P16989 ZBED6CL-201ENST00000343855 2933 ntAPPRIS P1 BASIC13.81□□□□□ -0.23e-8■□□□□ 10.5
YBX3P16989 PCYT1A-205ENST00000430755 798 ntTSL 313.73□□□□□ -0.213e-8■□□□□ 10.5
YBX3P16989 PCYT1A-210ENST00000443555 549 ntTSL 513.54□□□□□ -0.243e-8■□□□□ 10.5
YBX3P16989 PTPN7-208ENST00000476061 550 ntTSL 413.46□□□□□ -0.253e-8■□□□□ 10.5
YBX3P16989 TSN-201ENST00000389682 3420 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.291e-6■□□□□ 10.5
Retrieved 100 of 29,075 protein–RNA pairs in 242.2 ms