RNA–Protein interactions for RNA: ENST00000411739.6

NEDD1-202, Transcript of neural precursor cell expressed, developmentally down-regulated 1, humanhuman

TSL 2 BASIC

Gene NEDD1, Length 2,490 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD1-202ENST00000411739 NISCHQ9Y2I1 1504 aa28.9■■■□□ 2.22
NEDD1-202ENST00000411739 CCDC180Q9P1Z9 1646 aa25.55■■□□□ 1.68
NEDD1-202ENST00000411739 ABCC9O60706 1549 aa25.19■■□□□ 1.62
NEDD1-202ENST00000411739 DCAF8L2P0C7V8 631 aa24.38■■□□□ 1.49
NEDD1-202ENST00000411739 RB1CC1Q8TDY2 1594 aa24.1■■□□□ 1.45
NEDD1-202ENST00000411739 ZCCHC6Q5VYS8 1495 aaKnown RBP24.06■■□□□ 1.44
NEDD1-202ENST00000411739 NACADO15069 1562 aa24.05■■□□□ 1.44
NEDD1-202ENST00000411739 MYO15BQ96JP2 1530 aa23.84■■□□□ 1.41
NEDD1-202ENST00000411739 DCAF1Q9Y4B6 1507 aa23.79■■□□□ 1.4
NEDD1-202ENST00000411739 PABPN1Q86U42 306 aaKnown RBP eCLIP23.64■■□□□ 1.37
NEDD1-202ENST00000411739 UNC13AQ9UPW8 1703 aa23.58■■□□□ 1.37
NEDD1-202ENST00000411739 SCRIBQ14160 1630 aa23.5■■□□□ 1.35
NEDD1-202ENST00000411739 BICRAQ9NZM4 1560 aa23.42■■□□□ 1.34
NEDD1-202ENST00000411739 DNAJC5BQ9UF47 199 aa23.17■■□□□ 1.3
NEDD1-202ENST00000411739 SHROOM4Q9ULL8 1493 aa23.08■■□□□ 1.29
NEDD1-202ENST00000411739 EIF4G1Q04637 1599 aaKnown RBP22.79■■□□□ 1.24
NEDD1-202ENST00000411739 CC2D2AQ9P2K1 1620 aa22.71■■□□□ 1.23
NEDD1-202ENST00000411739 CECR2Q9BXF3 1484 aa22.61■■□□□ 1.21
NEDD1-202ENST00000411739 SMARCA4P51532 1647 aa22.4■■□□□ 1.18
NEDD1-202ENST00000411739 BAZ1AQ9NRL2 1556 aaPredicted RBP22.35■■□□□ 1.17
NEDD1-202ENST00000411739 MROH2BQ7Z745 1585 aa22.34■■□□□ 1.17
NEDD1-202ENST00000411739 ATAD2BQ9ULI0 1458 aa22.3■■□□□ 1.16
NEDD1-202ENST00000411739 NCAPD3P42695 1498 aa22.23■■□□□ 1.15
NEDD1-202ENST00000411739 SMARCA2P51531 1590 aa22.21■■□□□ 1.15
NEDD1-202ENST00000411739 BAZ1BQ9UIG0 1483 aaKnown RBP22.12■■□□□ 1.13
NEDD1-202ENST00000411739 PEG3Q9GZU2 1588 aa22.11■■□□□ 1.13
NEDD1-202ENST00000411739 WIZO95785 1651 aa22.1■■□□□ 1.13
NEDD1-202ENST00000411739 RSF1Q96T23 1441 aaPredicted RBP22.08■■□□□ 1.13
NEDD1-202ENST00000411739 HMGXB3Q12766 1538 aa22.08■■□□□ 1.13
NEDD1-202ENST00000411739 NESP48681 1621 aa21.83■■□□□ 1.08
NEDD1-202ENST00000411739 TOP2AP11388 1531 aaKnown RBP21.78■■□□□ 1.08
NEDD1-202ENST00000411739 SUPT5HO00267 1087 aaKnown RBP21.73■■□□□ 1.07
NEDD1-202ENST00000411739 ERCC6Q03468 1493 aa21.66■■□□□ 1.06
NEDD1-202ENST00000411739 CADPSQ9ULU8 1353 aa21.63■■□□□ 1.05
NEDD1-202ENST00000411739 LAMC3Q9Y6N6 1575 aa21.61■■□□□ 1.05
NEDD1-202ENST00000411739 CCDC88BA6NC98 1476 aa21.61■■□□□ 1.05
NEDD1-202ENST00000411739 PDS5BQ9NTI5 1447 aa21.51■■□□□ 1.03
NEDD1-202ENST00000411739 CFTRP13569 1480 aa21.49■■□□□ 1.03
NEDD1-202ENST00000411739 KIF21AQ7Z4S6 1674 aa21.48■■□□□ 1.03
NEDD1-202ENST00000411739 FANCD2Q9BXW9 1451 aa21.4■■□□□ 1.02
NEDD1-202ENST00000411739 THOC2Q8NI27 1593 aaKnown RBP21.36■■□□□ 1.01
NEDD1-202ENST00000411739 CEP164Q9UPV0 1460 aa21.34■■□□□ 1.01
NEDD1-202ENST00000411739 CUX2O14529 1486 aa21.31■■□□□ 1
NEDD1-202ENST00000411739 MRC2Q9UBG0 1479 aa21.29■■□□□ 1
NEDD1-202ENST00000411739 PRDM2Q13029 1718 aa21.24■□□□□ 0.99
NEDD1-202ENST00000411739 URB2Q14146 1524 aaKnown RBP21.19■□□□□ 0.98
NEDD1-202ENST00000411739 WDR62O43379 1518 aa21.19■□□□□ 0.98
NEDD1-202ENST00000411739 TOPBP1Q92547 1522 aa21.05■□□□□ 0.96
NEDD1-202ENST00000411739 DNMBPQ6XZF7 1577 aa20.98■□□□□ 0.95
NEDD1-202ENST00000411739 ABCC8Q09428 1581 aa20.96■□□□□ 0.95
NEDD1-202ENST00000411739 CUX1P39880 1505 aa20.93■□□□□ 0.94
NEDD1-202ENST00000411739 POLA1P09884 1462 aaPredicted RBP20.88■□□□□ 0.93
NEDD1-202ENST00000411739 ZNF608Q9ULD9 1512 aaPredicted RBP20.88■□□□□ 0.93
NEDD1-202ENST00000411739 IFT140Q96RY7 1462 aa20.87■□□□□ 0.93
NEDD1-202ENST00000411739 RAD54L2Q9Y4B4 1467 aa20.87■□□□□ 0.93
NEDD1-202ENST00000411739 FGD5Q6ZNL6 1462 aa20.85■□□□□ 0.93
NEDD1-202ENST00000411739 SOGA1O94964 1423 aa20.82■□□□□ 0.92
NEDD1-202ENST00000411739 WRNQ14191 1432 aaPredicted RBP eCLIP20.81■□□□□ 0.92
NEDD1-202ENST00000411739 TARBP1Q13395 1621 aaKnown RBP20.79■□□□□ 0.92
NEDD1-202ENST00000411739 AQRO60306 1485 aaKnown RBP eCLIP20.78■□□□□ 0.92
NEDD1-202ENST00000411739 SYNJ1O43426 1573 aa20.77■□□□□ 0.92
NEDD1-202ENST00000411739 TDRD9Q8NDG6 1382 aaKnown RBP20.77■□□□□ 0.91
NEDD1-202ENST00000411739 DNAJC5Q9H3Z4 198 aa20.72■□□□□ 0.91
NEDD1-202ENST00000411739 EIF4G3O43432 1585 aaKnown RBP20.71■□□□□ 0.91
NEDD1-202ENST00000411739 TOP2BQ02880 1626 aa20.7■□□□□ 0.9
NEDD1-202ENST00000411739 BIVM-ERCC5R4GMW8 1640 aa20.68■□□□□ 0.9
NEDD1-202ENST00000411739 ABCA10Q8WWZ4 1543 aa20.6■□□□□ 0.89
NEDD1-202ENST00000411739 FBLN2P98095 1184 aa20.6■□□□□ 0.89
NEDD1-202ENST00000411739 WDR97A6NE52 1622 aa20.59■□□□□ 0.89
NEDD1-202ENST00000411739 OSCARQ8IYS5 282 aa20.56■□□□□ 0.88
NEDD1-202ENST00000411739 GAPVD1Q14C86 1478 aa20.56■□□□□ 0.88
NEDD1-202ENST00000411739 SNAPC4Q5SXM2 1469 aa20.54■□□□□ 0.88
NEDD1-202ENST00000411739 GRIN2BQ13224 1484 aa20.52■□□□□ 0.88
NEDD1-202ENST00000411739 ABCA5Q8WWZ7 1642 aa20.5■□□□□ 0.87
NEDD1-202ENST00000411739 CHMP7Q8WUX9 453 aaPredicted RBP20.47■□□□□ 0.87
NEDD1-202ENST00000411739 PBRM1Q86U86 1689 aa20.47■□□□□ 0.87
NEDD1-202ENST00000411739 CHD1O14646 1710 aa20.46■□□□□ 0.87
NEDD1-202ENST00000411739 TRIM41Q8WV44 630 aa20.44■□□□□ 0.86
NEDD1-202ENST00000411739 MAGI1Q96QZ7 1491 aaPredicted RBP20.43■□□□□ 0.86
NEDD1-202ENST00000411739 SYNJ2O15056 1496 aa20.38■□□□□ 0.85
NEDD1-202ENST00000411739 KIF27Q86VH2 1401 aa20.35■□□□□ 0.85
NEDD1-202ENST00000411739 ERICH3Q5RHP9 1530 aa20.32■□□□□ 0.84
NEDD1-202ENST00000411739 ADAMTS12P58397 1594 aa20.31■□□□□ 0.84
NEDD1-202ENST00000411739 IGF1RP08069 1367 aa20.31■□□□□ 0.84
NEDD1-202ENST00000411739 RUSC2Q8N2Y8 1516 aa20.31■□□□□ 0.84
NEDD1-202ENST00000411739 FHAD1B1AJZ9 1412 aa20.3■□□□□ 0.84
NEDD1-202ENST00000411739 GRIN2AQ12879 1464 aa20.27■□□□□ 0.84
NEDD1-202ENST00000411739 CHIC1Q5VXU3 224 aa20.24■□□□□ 0.83
NEDD1-202ENST00000411739 CLASP1Q7Z460 1538 aa20.2■□□□□ 0.82
NEDD1-202ENST00000411739 CEP170Q5SW79 1584 aa20.19■□□□□ 0.82
NEDD1-202ENST00000411739 CARMIL1Q5VZK9 1371 aa20.19■□□□□ 0.82
NEDD1-202ENST00000411739 ARHGEF11O15085 1522 aa20.18■□□□□ 0.82
NEDD1-202ENST00000411739 RIMBP3CA6NJZ7 1639 aa20.18■□□□□ 0.82
NEDD1-202ENST00000411739 RIMBP3BA6NNM3 1639 aa20.18■□□□□ 0.82
NEDD1-202ENST00000411739 RIMBP3Q9UFD9 1639 aa20.18■□□□□ 0.82
NEDD1-202ENST00000411739 NUP160Q12769 1436 aa20.16■□□□□ 0.82
NEDD1-202ENST00000411739 FAM9AQ8IZU1 332 aaPredicted RBP20.14■□□□□ 0.82
NEDD1-202ENST00000411739 CUL7Q14999 1698 aa20.13■□□□□ 0.81
NEDD1-202ENST00000411739 CYB5RLQ6IPT4 315 aa20.12■□□□□ 0.81
NEDD1-202ENST00000411739 ERCC6L2Q5T890 1561 aa20.05■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms