RNA–Protein interactions for RNA: ENST00000549549.1

PRIM1-204, Transcript of DNA primase subunit 1, humanhuman

TSL 3

Gene PRIM1, Length 456 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRIM1-204ENST00000549549 CHIC1Q5VXU3 224 aa34.03■■■■□ 3.04
PRIM1-204ENST00000549549 AEBP2Q6ZN18 517 aaPredicted RBP33.6■■■□□ 2.97
PRIM1-204ENST00000549549 PHF23Q9BUL5 403 aaPredicted RBP30.1■■■□□ 2.41
PRIM1-204ENST00000549549 SENP3Q9H4L4 574 aaPredicted RBP28.26■■■□□ 2.11
PRIM1-204ENST00000549549 PLPPR3Q6T4P5 718 aa28.16■■■□□ 2.1
PRIM1-204ENST00000549549 ADRA2BP18089 450 aa26.35■■□□□ 1.81
PRIM1-204ENST00000549549 PPP6R1Q9UPN7 881 aa26.12■■□□□ 1.77
PRIM1-204ENST00000549549 FOXD1Q16676 465 aa26.1■■□□□ 1.77
PRIM1-204ENST00000549549 KCNA4P22459 653 aa25.81■■□□□ 1.72
PRIM1-204ENST00000549549 EHMT2Q96KQ7 1210 aa25.45■■□□□ 1.66
PRIM1-204ENST00000549549 PPP4R3CPQ6ZMV5 832 aa24.98■■□□□ 1.59
PRIM1-204ENST00000549549 PIAS4Q8N2W9 510 aaPredicted RBP24.84■■□□□ 1.57
PRIM1-204ENST00000549549 SLC4A1APQ9BWU0 796 aaKnown RBP24.79■■□□□ 1.56
PRIM1-204ENST00000549549 CSRNP3Q8WYN3 585 aa24.72■■□□□ 1.55
PRIM1-204ENST00000549549 NCBP3Q53F19 620 aaKnown RBP24.66■■□□□ 1.54
PRIM1-204ENST00000549549 NPM3O75607 178 aaKnown RBP24.33■■□□□ 1.49
PRIM1-204ENST00000549549 CNKSR2Q8WXI2 1034 aa24.01■■□□□ 1.43
PRIM1-204ENST00000549549 SCAF1Q9H7N4 1312 aaKnown RBP23.88■■□□□ 1.41
PRIM1-204ENST00000549549 ZBTB22O15209 634 aa23.81■■□□□ 1.4
PRIM1-204ENST00000549549 DNAJC5BQ9UF47 199 aa23.61■■□□□ 1.37
PRIM1-204ENST00000549549 MSH5O43196 834 aa23.55■■□□□ 1.36
PRIM1-204ENST00000549549 FOXD4L1Q9NU39 408 aa23.39■■□□□ 1.33
PRIM1-204ENST00000549549 MAPK8IP2Q13387 824 aaPredicted RBP23.35■■□□□ 1.33
PRIM1-204ENST00000549549 RNF216Q9NWF9 866 aaPredicted RBP23.26■■□□□ 1.31
PRIM1-204ENST00000549549 HOXD11P31277 338 aaPredicted RBP22.85■■□□□ 1.25
PRIM1-204ENST00000549549 DMRT2Q9Y5R5 561 aa22.8■■□□□ 1.24
PRIM1-204ENST00000549549 SLC4A2P04920 1241 aa22.71■■□□□ 1.23
PRIM1-204ENST00000549549 ATXN8OSP0DMR3 200 aa22.53■■□□□ 1.2
PRIM1-204ENST00000549549 AMER1Q5JTC6 1135 aaPredicted RBP22.45■■□□□ 1.18
PRIM1-204ENST00000549549 MYCNP04198 464 aaPredicted RBP22.44■■□□□ 1.18
PRIM1-204ENST00000549549 RTN4Q9NQC3 1192 aaKnown RBP22.44■■□□□ 1.18
PRIM1-204ENST00000549549 SLC24A1O60721 1099 aa22.3■■□□□ 1.16
PRIM1-204ENST00000549549 FKBP8Q14318 412 aa22.18■■□□□ 1.14
PRIM1-204ENST00000549549 ATF5Q9Y2D1 282 aaPredicted RBP21.77■■□□□ 1.08
PRIM1-204ENST00000549549 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.66■■□□□ 1.06
PRIM1-204ENST00000549549 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.65■■□□□ 1.06
PRIM1-204ENST00000549549 HNRNPUL2Q1KMD3 747 aaKnown RBP21.65■■□□□ 1.06
PRIM1-204ENST00000549549 SAMD1Q6SPF0 538 aaPredicted RBP21.64■■□□□ 1.05
PRIM1-204ENST00000549549 DCAF8L1A6NGE4 600 aa21.57■■□□□ 1.04
PRIM1-204ENST00000549549 U3KPZ7 1027 aaPredicted RBP21.53■■□□□ 1.04
PRIM1-204ENST00000549549 ZNF219Q9P2Y4 722 aaPredicted RBP21.26■□□□□ 0.99
PRIM1-204ENST00000549549 APLP2Q06481 763 aa21.1■□□□□ 0.97
PRIM1-204ENST00000549549 FBXO3Q9UK99 471 aa21.07■□□□□ 0.96
PRIM1-204ENST00000549549 SPDYE4A6NLX3 237 aa20.99■□□□□ 0.95
PRIM1-204ENST00000549549 PROM2Q8N271 834 aa20.94■□□□□ 0.94
PRIM1-204ENST00000549549 MKRN4PQ13434 485 aaPredicted RBP20.91■□□□□ 0.94
PRIM1-204ENST00000549549 VASPP50552 380 aaPredicted RBP20.76■□□□□ 0.91
PRIM1-204ENST00000549549 FBLN2P98095 1184 aa20.7■□□□□ 0.9
PRIM1-204ENST00000549549 PLCB2Q00722 1185 aa20.7■□□□□ 0.9
PRIM1-204ENST00000549549 IFNLR1Q8IU57 520 aaPredicted RBP20.6■□□□□ 0.89
PRIM1-204ENST00000549549 POLA2Q14181 598 aa20.53■□□□□ 0.88
PRIM1-204ENST00000549549 TRHP20396 242 aaPredicted RBP20.52■□□□□ 0.88
PRIM1-204ENST00000549549 SPINK5Q9NQ38 1064 aaPredicted RBP20.52■□□□□ 0.88
PRIM1-204ENST00000549549 PKD2Q13563 968 aa20.42■□□□□ 0.86
PRIM1-204ENST00000549549 RNF39Q9H2S5 420 aa20.34■□□□□ 0.85
PRIM1-204ENST00000549549 CAPN15O75808 1086 aa20.31■□□□□ 0.84
PRIM1-204ENST00000549549 HAP1P54257 671 aaPredicted RBP20.31■□□□□ 0.84
PRIM1-204ENST00000549549 DCAF8L2P0C7V8 631 aa20.29■□□□□ 0.84
PRIM1-204ENST00000549549 ZBTB12Q9Y330 459 aaPredicted RBP20.28■□□□□ 0.84
PRIM1-204ENST00000549549 C1QBPQ07021 282 aaKnown RBP20.16■□□□□ 0.82
PRIM1-204ENST00000549549 VSIG10Q8N0Z9 540 aa20.16■□□□□ 0.82
PRIM1-204ENST00000549549 SPOCK2Q92563 424 aa20.12■□□□□ 0.81
PRIM1-204ENST00000549549 BCANQ96GW7 911 aa20.09■□□□□ 0.81
PRIM1-204ENST00000549549 STAG3Q9UJ98 1225 aa20.04■□□□□ 0.8
PRIM1-204ENST00000549549 ABCB7O75027 752 aa20.03■□□□□ 0.8
PRIM1-204ENST00000549549 KLHL34Q8N239 644 aa20.03■□□□□ 0.8
PRIM1-204ENST00000549549 BBXQ8WY36 941 aaPredicted RBP20.03■□□□□ 0.8
PRIM1-204ENST00000549549 ECM2O94769 699 aaPredicted RBP19.97■□□□□ 0.79
PRIM1-204ENST00000549549 ZBTB4Q9P1Z0 1013 aaPredicted RBP19.96■□□□□ 0.79
PRIM1-204ENST00000549549 ZNF692Q9BU19 519 aaPredicted RBP19.94■□□□□ 0.78
PRIM1-204ENST00000549549 NPM1P06748 294 aaKnown RBP eCLIP19.93■□□□□ 0.78
PRIM1-204ENST00000549549 SSUH2Q9Y2M2 353 aa19.89■□□□□ 0.77
PRIM1-204ENST00000549549 SPDYE2BA6NHP3 402 aa19.87■□□□□ 0.77
PRIM1-204ENST00000549549 SPDYE6P0CI01 402 aa19.87■□□□□ 0.77
PRIM1-204ENST00000549549 SPDYE2Q495Y8 402 aa19.87■□□□□ 0.77
PRIM1-204ENST00000549549 KDM2AQ9Y2K7 1162 aa19.84■□□□□ 0.77
PRIM1-204ENST00000549549 TAOK2Q9UL54 1235 aa19.83■□□□□ 0.77
PRIM1-204ENST00000549549 PLCD3Q8N3E9 789 aa19.82■□□□□ 0.76
PRIM1-204ENST00000549549 PAXIP1Q6ZW49 1069 aaPredicted RBP19.81■□□□□ 0.76
PRIM1-204ENST00000549549 RGL2O15211 777 aa19.79■□□□□ 0.76
PRIM1-204ENST00000549549 DSG3P32926 999 aa19.78■□□□□ 0.76
PRIM1-204ENST00000549549 PRKCSHP14314 528 aaPredicted RBP19.77■□□□□ 0.76
PRIM1-204ENST00000549549 OSCARQ8IYS5 282 aa19.75■□□□□ 0.75
PRIM1-204ENST00000549549 PABPN1Q86U42 306 aaKnown RBP eCLIP19.73■□□□□ 0.75
PRIM1-204ENST00000549549 MIER1Q8N108 512 aa19.73■□□□□ 0.75
PRIM1-204ENST00000549549 CFAP44Q96MT7 982 aa19.72■□□□□ 0.75
PRIM1-204ENST00000549549 SPRYD3Q8NCJ5 442 aa19.66■□□□□ 0.74
PRIM1-204ENST00000549549 ZBTB47Q9UFB7 747 aaPredicted RBP19.56■□□□□ 0.72
PRIM1-204ENST00000549549 TSHZ2Q9NRE2 1034 aa19.55■□□□□ 0.72
PRIM1-204ENST00000549549 CIZ1Q9ULV3 898 aaPredicted RBP19.52■□□□□ 0.72
PRIM1-204ENST00000549549 PLEKHG5O94827 1062 aa19.49■□□□□ 0.71
PRIM1-204ENST00000549549 CHGAP10645 457 aaKnown RBP19.49■□□□□ 0.71
PRIM1-204ENST00000549549 TRIM41Q8WV44 630 aa19.49■□□□□ 0.71
PRIM1-204ENST00000549549 TPRNQ4KMQ1 711 aa19.48■□□□□ 0.71
PRIM1-204ENST00000549549 DNAJC5Q9H3Z4 198 aa19.4■□□□□ 0.7
PRIM1-204ENST00000549549 HS6ST3Q8IZP7 471 aa19.38■□□□□ 0.69
PRIM1-204ENST00000549549 GSE1Q14687 1217 aa19.27■□□□□ 0.68
PRIM1-204ENST00000549549 POTEDQ86YR6 584 aa19.24■□□□□ 0.67
PRIM1-204ENST00000549549 RNF25Q96BH1 459 aaPredicted RBP19.24■□□□□ 0.67
PRIM1-204ENST00000549549 NUBP1P53384 320 aa19.18■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms