RNA–Protein interactions for RNA: ENST00000555114.5

NEDD1-207, Transcript of neural precursor cell expressed, developmentally down-regulated 1, humanhuman

TSL 3

Gene NEDD1, Length 731 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD1-207ENST00000555114 NISCHQ9Y2I1 1504 aa38.84■■■■□ 3.81
NEDD1-207ENST00000555114 ABCC9O60706 1549 aa35.02■■■■□ 3.2
NEDD1-207ENST00000555114 CCDC180Q9P1Z9 1646 aa34.92■■■■□ 3.18
NEDD1-207ENST00000555114 RB1CC1Q8TDY2 1594 aa33.34■■■□□ 2.93
NEDD1-207ENST00000555114 NACADO15069 1562 aa33.08■■■□□ 2.89
NEDD1-207ENST00000555114 DCAF8L2P0C7V8 631 aa32.89■■■□□ 2.86
NEDD1-207ENST00000555114 DNAJC5BQ9UF47 199 aa32.88■■■□□ 2.85
NEDD1-207ENST00000555114 PABPN1Q86U42 306 aaKnown RBP eCLIP32.59■■■□□ 2.81
NEDD1-207ENST00000555114 MYO15BQ96JP2 1530 aa32.58■■■□□ 2.81
NEDD1-207ENST00000555114 UNC13AQ9UPW8 1703 aa32.43■■■□□ 2.78
NEDD1-207ENST00000555114 BICRAQ9NZM4 1560 aa32.25■■■□□ 2.75
NEDD1-207ENST00000555114 ZCCHC6Q5VYS8 1495 aaKnown RBP32.16■■■□□ 2.74
NEDD1-207ENST00000555114 DCAF1Q9Y4B6 1507 aa32.1■■■□□ 2.73
NEDD1-207ENST00000555114 SHROOM4Q9ULL8 1493 aa31.97■■■□□ 2.71
NEDD1-207ENST00000555114 SCRIBQ14160 1630 aa31.78■■■□□ 2.68
NEDD1-207ENST00000555114 CC2D2AQ9P2K1 1620 aa31.62■■■□□ 2.65
NEDD1-207ENST00000555114 CECR2Q9BXF3 1484 aa31.59■■■□□ 2.65
NEDD1-207ENST00000555114 EIF4G1Q04637 1599 aaKnown RBP31.54■■■□□ 2.64
NEDD1-207ENST00000555114 NCAPD3P42695 1498 aa30.51■■■□□ 2.48
NEDD1-207ENST00000555114 ATAD2BQ9ULI0 1458 aa30.39■■■□□ 2.46
NEDD1-207ENST00000555114 DNAJC5Q9H3Z4 198 aa30.38■■■□□ 2.45
NEDD1-207ENST00000555114 SMARCA2P51531 1590 aa30.34■■■□□ 2.45
NEDD1-207ENST00000555114 ERCC6Q03468 1493 aa30.33■■■□□ 2.45
NEDD1-207ENST00000555114 SMARCA4P51532 1647 aa30.32■■■□□ 2.44
NEDD1-207ENST00000555114 CUX2O14529 1486 aa30.31■■■□□ 2.44
NEDD1-207ENST00000555114 HMGXB3Q12766 1538 aa30.28■■■□□ 2.44
NEDD1-207ENST00000555114 BAZ1AQ9NRL2 1556 aaPredicted RBP30.2■■■□□ 2.42
NEDD1-207ENST00000555114 BAZ1BQ9UIG0 1483 aaKnown RBP30.12■■■□□ 2.41
NEDD1-207ENST00000555114 PEG3Q9GZU2 1588 aa30.03■■■□□ 2.4
NEDD1-207ENST00000555114 NESP48681 1621 aa30.01■■■□□ 2.39
NEDD1-207ENST00000555114 MROH2BQ7Z745 1585 aa29.89■■■□□ 2.38
NEDD1-207ENST00000555114 LAMC3Q9Y6N6 1575 aa29.86■■■□□ 2.37
NEDD1-207ENST00000555114 THOC2Q8NI27 1593 aaKnown RBP29.75■■■□□ 2.35
NEDD1-207ENST00000555114 PDS5BQ9NTI5 1447 aa29.74■■■□□ 2.35
NEDD1-207ENST00000555114 KIF21AQ7Z4S6 1674 aa29.61■■■□□ 2.33
NEDD1-207ENST00000555114 CADPSQ9ULU8 1353 aa29.6■■■□□ 2.33
NEDD1-207ENST00000555114 WIZO95785 1651 aa29.51■■■□□ 2.31
NEDD1-207ENST00000555114 MRC2Q9UBG0 1479 aa29.45■■■□□ 2.31
NEDD1-207ENST00000555114 WDR62O43379 1518 aa29.35■■■□□ 2.29
NEDD1-207ENST00000555114 CEP164Q9UPV0 1460 aa29.32■■■□□ 2.28
NEDD1-207ENST00000555114 FANCD2Q9BXW9 1451 aa29.25■■■□□ 2.27
NEDD1-207ENST00000555114 RSF1Q96T23 1441 aaPredicted RBP29.25■■■□□ 2.27
NEDD1-207ENST00000555114 CFTRP13569 1480 aa29.22■■■□□ 2.27
NEDD1-207ENST00000555114 TOP2AP11388 1531 aaKnown RBP29.2■■■□□ 2.26
NEDD1-207ENST00000555114 TRIM41Q8WV44 630 aa29.03■■■□□ 2.24
NEDD1-207ENST00000555114 URB2Q14146 1524 aaKnown RBP28.97■■■□□ 2.23
NEDD1-207ENST00000555114 OSCARQ8IYS5 282 aa28.91■■■□□ 2.22
NEDD1-207ENST00000555114 PRDM2Q13029 1718 aa28.88■■■□□ 2.21
NEDD1-207ENST00000555114 CCDC88BA6NC98 1476 aa28.84■■■□□ 2.21
NEDD1-207ENST00000555114 IFT140Q96RY7 1462 aa28.74■■■□□ 2.19
NEDD1-207ENST00000555114 ABCC8Q09428 1581 aa28.68■■■□□ 2.18
NEDD1-207ENST00000555114 TOPBP1Q92547 1522 aa28.67■■■□□ 2.18
NEDD1-207ENST00000555114 ZNF608Q9ULD9 1512 aaPredicted RBP28.63■■■□□ 2.17
NEDD1-207ENST00000555114 DNMBPQ6XZF7 1577 aa28.57■■■□□ 2.16
NEDD1-207ENST00000555114 EIF4G3O43432 1585 aaKnown RBP28.49■■■□□ 2.15
NEDD1-207ENST00000555114 RIMBP3CA6NJZ7 1639 aa28.46■■■□□ 2.15
NEDD1-207ENST00000555114 RIMBP3BA6NNM3 1639 aa28.46■■■□□ 2.15
NEDD1-207ENST00000555114 RIMBP3Q9UFD9 1639 aa28.46■■■□□ 2.15
NEDD1-207ENST00000555114 ARHGEF11O15085 1522 aa28.38■■■□□ 2.13
NEDD1-207ENST00000555114 TARBP1Q13395 1621 aaKnown RBP28.38■■■□□ 2.13
NEDD1-207ENST00000555114 AQRO60306 1485 aaKnown RBP eCLIP28.38■■■□□ 2.13
NEDD1-207ENST00000555114 POLA1P09884 1462 aaPredicted RBP28.37■■■□□ 2.13
NEDD1-207ENST00000555114 FBLN2P98095 1184 aa28.29■■■□□ 2.12
NEDD1-207ENST00000555114 CHD1O14646 1710 aa28.27■■■□□ 2.12
NEDD1-207ENST00000555114 SOGA1O94964 1423 aa28.26■■■□□ 2.12
NEDD1-207ENST00000555114 RAD54L2Q9Y4B4 1467 aa28.24■■■□□ 2.11
NEDD1-207ENST00000555114 CYB5RLQ6IPT4 315 aa28.21■■■□□ 2.11
NEDD1-207ENST00000555114 TDRD9Q8NDG6 1382 aaKnown RBP28.2■■■□□ 2.1
NEDD1-207ENST00000555114 WDR97A6NE52 1622 aa28.19■■■□□ 2.1
NEDD1-207ENST00000555114 FGD5Q6ZNL6 1462 aa28.17■■■□□ 2.1
NEDD1-207ENST00000555114 SNAPC4Q5SXM2 1469 aa28.11■■■□□ 2.09
NEDD1-207ENST00000555114 CUX1P39880 1505 aa28.09■■■□□ 2.09
NEDD1-207ENST00000555114 ARAP1Q96P48 1450 aa28.08■■■□□ 2.09
NEDD1-207ENST00000555114 CHMP7Q8WUX9 453 aaPredicted RBP28.08■■■□□ 2.09
NEDD1-207ENST00000555114 MAGI1Q96QZ7 1491 aaPredicted RBP28.07■■■□□ 2.08
NEDD1-207ENST00000555114 GRIN2BQ13224 1484 aa28.05■■■□□ 2.08
NEDD1-207ENST00000555114 SYNJ1O43426 1573 aa28.01■■■□□ 2.07
NEDD1-207ENST00000555114 TRHP20396 242 aaPredicted RBP27.99■■■□□ 2.07
NEDD1-207ENST00000555114 CLASP1Q7Z460 1538 aa27.97■■■□□ 2.07
NEDD1-207ENST00000555114 SYNJ2O15056 1496 aa27.96■■■□□ 2.07
NEDD1-207ENST00000555114 GAPVD1Q14C86 1478 aa27.92■■■□□ 2.06
NEDD1-207ENST00000555114 SUPT5HO00267 1087 aaKnown RBP27.9■■■□□ 2.06
NEDD1-207ENST00000555114 PBRM1Q86U86 1689 aa27.86■■■□□ 2.05
NEDD1-207ENST00000555114 ABCA10Q8WWZ4 1543 aa27.86■■■□□ 2.05
NEDD1-207ENST00000555114 ABCA5Q8WWZ7 1642 aa27.8■■■□□ 2.04
NEDD1-207ENST00000555114 WRNQ14191 1432 aaPredicted RBP eCLIP27.76■■■□□ 2.04
NEDD1-207ENST00000555114 GRIN2AQ12879 1464 aa27.67■■■□□ 2.02
NEDD1-207ENST00000555114 TOP2BQ02880 1626 aa27.64■■■□□ 2.02
NEDD1-207ENST00000555114 BIVM-ERCC5R4GMW8 1640 aa27.63■■■□□ 2.01
NEDD1-207ENST00000555114 ADAMTS12P58397 1594 aa27.61■■■□□ 2.01
NEDD1-207ENST00000555114 FHAD1B1AJZ9 1412 aa27.58■■■□□ 2
NEDD1-207ENST00000555114 NUP160Q12769 1436 aa27.57■■■□□ 2
NEDD1-207ENST00000555114 ERICH3Q5RHP9 1530 aa27.53■■■□□ 2
NEDD1-207ENST00000555114 CEP170Q5SW79 1584 aa27.52■■■□□ 2
NEDD1-207ENST00000555114 ERCC6L2Q5T890 1561 aa27.47■■□□□ 1.99
NEDD1-207ENST00000555114 SHROOM2Q13796 1616 aa27.42■■□□□ 1.98
NEDD1-207ENST00000555114 PRG4Q92954 1404 aaPredicted RBP27.33■■□□□ 1.96
NEDD1-207ENST00000555114 AEBP2Q6ZN18 517 aaPredicted RBP27.31■■□□□ 1.96
NEDD1-207ENST00000555114 JPH4Q96JJ6 628 aa27.31■■□□□ 1.96
NEDD1-207ENST00000555114 RUSC2Q8N2Y8 1516 aa27.22■■□□□ 1.95
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms