RNA–Protein interactions for RNA: ENST00000488235.1

PCYT1A-215, Transcript of phosphate cytidylyltransferase 1, choline, alpha, humanhuman

TSL 3

Gene PCYT1A, Length 466 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCYT1A-215ENST00000488235 NISCHQ9Y2I1 1504 aa28.12■■■□□ 2.09
PCYT1A-215ENST00000488235 ABCC9O60706 1549 aa25.1■■□□□ 1.61
PCYT1A-215ENST00000488235 CCDC180Q9P1Z9 1646 aa25.09■■□□□ 1.61
PCYT1A-215ENST00000488235 RB1CC1Q8TDY2 1594 aa23.84■■□□□ 1.41
PCYT1A-215ENST00000488235 NACADO15069 1562 aa23.72■■□□□ 1.39
PCYT1A-215ENST00000488235 DCAF8L2P0C7V8 631 aa23.69■■□□□ 1.38
PCYT1A-215ENST00000488235 DNAJC5BQ9UF47 199 aa23.52■■□□□ 1.36
PCYT1A-215ENST00000488235 PABPN1Q86U42 306 aaKnown RBP eCLIP23.42■■□□□ 1.34
PCYT1A-215ENST00000488235 MYO15BQ96JP2 1530 aa23.42■■□□□ 1.34
PCYT1A-215ENST00000488235 UNC13AQ9UPW8 1703 aa23.36■■□□□ 1.33
PCYT1A-215ENST00000488235 ZCCHC6Q5VYS8 1495 aaKnown RBP23.34■■□□□ 1.33
PCYT1A-215ENST00000488235 BICRAQ9NZM4 1560 aa23.25■■□□□ 1.31
PCYT1A-215ENST00000488235 DCAF1Q9Y4B6 1507 aa23.18■■□□□ 1.3
PCYT1A-215ENST00000488235 SCRIBQ14160 1630 aa22.97■■□□□ 1.27
PCYT1A-215ENST00000488235 SHROOM4Q9ULL8 1493 aa22.81■■□□□ 1.24
PCYT1A-215ENST00000488235 CC2D2AQ9P2K1 1620 aa22.64■■□□□ 1.22
PCYT1A-215ENST00000488235 EIF4G1Q04637 1599 aaKnown RBP22.63■■□□□ 1.21
PCYT1A-215ENST00000488235 CECR2Q9BXF3 1484 aa22.56■■□□□ 1.2
PCYT1A-215ENST00000488235 NCAPD3P42695 1498 aa21.94■■□□□ 1.1
PCYT1A-215ENST00000488235 ATAD2BQ9ULI0 1458 aa21.92■■□□□ 1.1
PCYT1A-215ENST00000488235 SMARCA4P51532 1647 aa21.9■■□□□ 1.1
PCYT1A-215ENST00000488235 SMARCA2P51531 1590 aa21.78■■□□□ 1.08
PCYT1A-215ENST00000488235 BAZ1AQ9NRL2 1556 aaPredicted RBP21.77■■□□□ 1.08
PCYT1A-215ENST00000488235 HMGXB3Q12766 1538 aa21.75■■□□□ 1.07
PCYT1A-215ENST00000488235 MROH2BQ7Z745 1585 aa21.72■■□□□ 1.07
PCYT1A-215ENST00000488235 PEG3Q9GZU2 1588 aa21.67■■□□□ 1.06
PCYT1A-215ENST00000488235 BAZ1BQ9UIG0 1483 aaKnown RBP21.67■■□□□ 1.06
PCYT1A-215ENST00000488235 NESP48681 1621 aa21.62■■□□□ 1.05
PCYT1A-215ENST00000488235 ERCC6Q03468 1493 aa21.59■■□□□ 1.05
PCYT1A-215ENST00000488235 CUX2O14529 1486 aa21.5■■□□□ 1.03
PCYT1A-215ENST00000488235 WIZO95785 1651 aa21.44■■□□□ 1.02
PCYT1A-215ENST00000488235 DNAJC5Q9H3Z4 198 aa21.4■■□□□ 1.02
PCYT1A-215ENST00000488235 LAMC3Q9Y6N6 1575 aa21.38■■□□□ 1.01
PCYT1A-215ENST00000488235 THOC2Q8NI27 1593 aaKnown RBP21.33■■□□□ 1.01
PCYT1A-215ENST00000488235 RSF1Q96T23 1441 aaPredicted RBP21.3■■□□□ 1
PCYT1A-215ENST00000488235 KIF21AQ7Z4S6 1674 aa21.28■■□□□ 1
PCYT1A-215ENST00000488235 CADPSQ9ULU8 1353 aa21.28■■□□□ 1
PCYT1A-215ENST00000488235 PDS5BQ9NTI5 1447 aa21.25■□□□□ 0.99
PCYT1A-215ENST00000488235 TOP2AP11388 1531 aaKnown RBP21.14■□□□□ 0.97
PCYT1A-215ENST00000488235 MRC2Q9UBG0 1479 aa21.09■□□□□ 0.97
PCYT1A-215ENST00000488235 CFTRP13569 1480 aa21.07■□□□□ 0.96
PCYT1A-215ENST00000488235 WDR62O43379 1518 aa21.05■□□□□ 0.96
PCYT1A-215ENST00000488235 FANCD2Q9BXW9 1451 aa21.04■□□□□ 0.96
PCYT1A-215ENST00000488235 CEP164Q9UPV0 1460 aa21.03■□□□□ 0.96
PCYT1A-215ENST00000488235 CCDC88BA6NC98 1476 aa20.94■□□□□ 0.94
PCYT1A-215ENST00000488235 URB2Q14146 1524 aaKnown RBP20.9■□□□□ 0.94
PCYT1A-215ENST00000488235 PRDM2Q13029 1718 aa20.78■□□□□ 0.92
PCYT1A-215ENST00000488235 TOPBP1Q92547 1522 aa20.67■□□□□ 0.9
PCYT1A-215ENST00000488235 ZNF608Q9ULD9 1512 aaPredicted RBP20.64■□□□□ 0.9
PCYT1A-215ENST00000488235 IFT140Q96RY7 1462 aa20.6■□□□□ 0.89
PCYT1A-215ENST00000488235 DNMBPQ6XZF7 1577 aa20.57■□□□□ 0.88
PCYT1A-215ENST00000488235 OSCARQ8IYS5 282 aa20.54■□□□□ 0.88
PCYT1A-215ENST00000488235 TRIM41Q8WV44 630 aa20.54■□□□□ 0.88
PCYT1A-215ENST00000488235 ABCC8Q09428 1581 aa20.53■□□□□ 0.88
PCYT1A-215ENST00000488235 TARBP1Q13395 1621 aaKnown RBP20.48■□□□□ 0.87
PCYT1A-215ENST00000488235 POLA1P09884 1462 aaPredicted RBP20.48■□□□□ 0.87
PCYT1A-215ENST00000488235 EIF4G3O43432 1585 aaKnown RBP20.47■□□□□ 0.87
PCYT1A-215ENST00000488235 AQRO60306 1485 aaKnown RBP eCLIP20.46■□□□□ 0.871e-6■■□□□ 14.3
PCYT1A-215ENST00000488235 SUPT5HO00267 1087 aaKnown RBP20.44■□□□□ 0.86
PCYT1A-215ENST00000488235 RAD54L2Q9Y4B4 1467 aa20.43■□□□□ 0.86
PCYT1A-215ENST00000488235 CUX1P39880 1505 aa20.39■□□□□ 0.85
PCYT1A-215ENST00000488235 FGD5Q6ZNL6 1462 aa20.36■□□□□ 0.85
PCYT1A-215ENST00000488235 SOGA1O94964 1423 aa20.36■□□□□ 0.85
PCYT1A-215ENST00000488235 TDRD9Q8NDG6 1382 aaKnown RBP20.34■□□□□ 0.85
PCYT1A-215ENST00000488235 RIMBP3CA6NJZ7 1639 aa20.3■□□□□ 0.84
PCYT1A-215ENST00000488235 RIMBP3BA6NNM3 1639 aa20.3■□□□□ 0.84
PCYT1A-215ENST00000488235 RIMBP3Q9UFD9 1639 aa20.3■□□□□ 0.84
PCYT1A-215ENST00000488235 CHD1O14646 1710 aa20.28■□□□□ 0.84
PCYT1A-215ENST00000488235 ARHGEF11O15085 1522 aa20.26■□□□□ 0.83
PCYT1A-215ENST00000488235 FBLN2P98095 1184 aa20.25■□□□□ 0.83
PCYT1A-215ENST00000488235 SNAPC4Q5SXM2 1469 aa20.23■□□□□ 0.83
PCYT1A-215ENST00000488235 WDR97A6NE52 1622 aa20.18■□□□□ 0.82
PCYT1A-215ENST00000488235 GRIN2BQ13224 1484 aa20.15■□□□□ 0.82
PCYT1A-215ENST00000488235 MAGI1Q96QZ7 1491 aaPredicted RBP20.12■□□□□ 0.81
PCYT1A-215ENST00000488235 ABCA10Q8WWZ4 1543 aa20.12■□□□□ 0.81
PCYT1A-215ENST00000488235 CYB5RLQ6IPT4 315 aa20.11■□□□□ 0.81
PCYT1A-215ENST00000488235 GAPVD1Q14C86 1478 aa20.11■□□□□ 0.81
PCYT1A-215ENST00000488235 ARAP1Q96P48 1450 aa20.1■□□□□ 0.81
PCYT1A-215ENST00000488235 CHMP7Q8WUX9 453 aaPredicted RBP20.09■□□□□ 0.81
PCYT1A-215ENST00000488235 CLASP1Q7Z460 1538 aa20.08■□□□□ 0.81
PCYT1A-215ENST00000488235 ABCA5Q8WWZ7 1642 aa20.08■□□□□ 0.8
PCYT1A-215ENST00000488235 SYNJ2O15056 1496 aa20.07■□□□□ 0.8
PCYT1A-215ENST00000488235 SYNJ1O43426 1573 aa20.07■□□□□ 0.8
PCYT1A-215ENST00000488235 PBRM1Q86U86 1689 aa20.07■□□□□ 0.8
PCYT1A-215ENST00000488235 WRNQ14191 1432 aaPredicted RBP eCLIP20.04■□□□□ 0.8
PCYT1A-215ENST00000488235 TOP2BQ02880 1626 aa20.03■□□□□ 0.8
PCYT1A-215ENST00000488235 BIVM-ERCC5R4GMW8 1640 aa20.03■□□□□ 0.8
PCYT1A-215ENST00000488235 ADAMTS12P58397 1594 aa19.92■□□□□ 0.78
PCYT1A-215ENST00000488235 GRIN2AQ12879 1464 aa19.92■□□□□ 0.78
PCYT1A-215ENST00000488235 CEP170Q5SW79 1584 aa19.87■□□□□ 0.77
PCYT1A-215ENST00000488235 NUP160Q12769 1436 aa19.85■□□□□ 0.77
PCYT1A-215ENST00000488235 ERCC6L2Q5T890 1561 aa19.85■□□□□ 0.77
PCYT1A-215ENST00000488235 FHAD1B1AJZ9 1412 aa19.85■□□□□ 0.77
PCYT1A-215ENST00000488235 ERICH3Q5RHP9 1530 aa19.83■□□□□ 0.77
PCYT1A-215ENST00000488235 TRHP20396 242 aaPredicted RBP19.81■□□□□ 0.76
PCYT1A-215ENST00000488235 SHROOM2Q13796 1616 aa19.73■□□□□ 0.75
PCYT1A-215ENST00000488235 IGF1RP08069 1367 aa19.68■□□□□ 0.74
PCYT1A-215ENST00000488235 PRG4Q92954 1404 aaPredicted RBP19.64■□□□□ 0.73
PCYT1A-215ENST00000488235 RUSC2Q8N2Y8 1516 aa19.64■□□□□ 0.73
PCYT1A-215ENST00000488235 KIF27Q86VH2 1401 aa19.63■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 64 ms