RNA–Protein interactions for RNA: ENST00000477554.5

PTPN7-209, Transcript of protein tyrosine phosphatase, non-receptor type 7, humanhuman

APPRIS ALT2 TSL 2

Gene PTPN7, Length 1,432 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN7-209ENST00000477554 NISCHQ9Y2I1 1504 aa43.42■■■■■ 4.54
PTPN7-209ENST00000477554 CCDC180Q9P1Z9 1646 aa38.6■■■■□ 3.77
PTPN7-209ENST00000477554 ABCC9O60706 1549 aa38.14■■■■□ 3.7
PTPN7-209ENST00000477554 RB1CC1Q8TDY2 1594 aa36.42■■■■□ 3.42
PTPN7-209ENST00000477554 DCAF8L2P0C7V8 631 aa36.41■■■■□ 3.42
PTPN7-209ENST00000477554 NACADO15069 1562 aa36.31■■■■□ 3.4
PTPN7-209ENST00000477554 ZCCHC6Q5VYS8 1495 aaKnown RBP36.14■■■■□ 3.38
PTPN7-209ENST00000477554 MYO15BQ96JP2 1530 aa35.97■■■■□ 3.35
PTPN7-209ENST00000477554 UNC13AQ9UPW8 1703 aa35.81■■■■□ 3.32
PTPN7-209ENST00000477554 DCAF1Q9Y4B6 1507 aa35.79■■■■□ 3.32
PTPN7-209ENST00000477554 PABPN1Q86U42 306 aaKnown RBP eCLIP35.65■■■■□ 3.3
PTPN7-209ENST00000477554 BICRAQ9NZM4 1560 aa35.52■■■■□ 3.28
PTPN7-209ENST00000477554 SCRIBQ14160 1630 aa35.39■■■■□ 3.26
PTPN7-209ENST00000477554 DNAJC5BQ9UF47 199 aa35.31■■■■□ 3.24
PTPN7-209ENST00000477554 SHROOM4Q9ULL8 1493 aa34.79■■■■□ 3.16
PTPN7-209ENST00000477554 EIF4G1Q04637 1599 aaKnown RBP34.51■■■■□ 3.12
PTPN7-209ENST00000477554 CC2D2AQ9P2K1 1620 aa34.46■■■■□ 3.11
PTPN7-209ENST00000477554 CECR2Q9BXF3 1484 aa34.21■■■■□ 3.07
PTPN7-209ENST00000477554 SMARCA4P51532 1647 aa33.75■■■□□ 2.99
PTPN7-209ENST00000477554 ATAD2BQ9ULI0 1458 aa33.61■■■□□ 2.97
PTPN7-209ENST00000477554 BAZ1AQ9NRL2 1556 aaPredicted RBP33.59■■■□□ 2.97
PTPN7-209ENST00000477554 MROH2BQ7Z745 1585 aa33.56■■■□□ 2.96
PTPN7-209ENST00000477554 NCAPD3P42695 1498 aa33.55■■■□□ 2.96
PTPN7-209ENST00000477554 SMARCA2P51531 1590 aa33.45■■■□□ 2.95
PTPN7-209ENST00000477554 HMGXB3Q12766 1538 aa33.36■■■□□ 2.93
PTPN7-209ENST00000477554 PEG3Q9GZU2 1588 aa33.35■■■□□ 2.93
PTPN7-209ENST00000477554 BAZ1BQ9UIG0 1483 aaKnown RBP33.28■■■□□ 2.92
PTPN7-209ENST00000477554 WIZO95785 1651 aa33.22■■■□□ 2.91
PTPN7-209ENST00000477554 RSF1Q96T23 1441 aaPredicted RBP33.05■■■□□ 2.88
PTPN7-209ENST00000477554 NESP48681 1621 aa33.02■■■□□ 2.88
PTPN7-209ENST00000477554 ERCC6Q03468 1493 aa32.75■■■□□ 2.83
PTPN7-209ENST00000477554 TOP2AP11388 1531 aaKnown RBP32.71■■■□□ 2.83
PTPN7-209ENST00000477554 LAMC3Q9Y6N6 1575 aa32.67■■■□□ 2.82
PTPN7-209ENST00000477554 CADPSQ9ULU8 1353 aa32.57■■■□□ 2.8
PTPN7-209ENST00000477554 KIF21AQ7Z4S6 1674 aa32.57■■■□□ 2.8
PTPN7-209ENST00000477554 THOC2Q8NI27 1593 aaKnown RBP32.46■■■□□ 2.79
PTPN7-209ENST00000477554 PDS5BQ9NTI5 1447 aa32.42■■■□□ 2.78
PTPN7-209ENST00000477554 CUX2O14529 1486 aa32.41■■■□□ 2.78
PTPN7-209ENST00000477554 CCDC88BA6NC98 1476 aa32.4■■■□□ 2.78
PTPN7-209ENST00000477554 CFTRP13569 1480 aa32.36■■■□□ 2.77
PTPN7-209ENST00000477554 FANCD2Q9BXW9 1451 aa32.24■■■□□ 2.75
PTPN7-209ENST00000477554 MRC2Q9UBG0 1479 aa32.18■■■□□ 2.74
PTPN7-209ENST00000477554 CEP164Q9UPV0 1460 aa32.17■■■□□ 2.74
PTPN7-209ENST00000477554 SUPT5HO00267 1087 aaKnown RBP32.12■■■□□ 2.73
PTPN7-209ENST00000477554 WDR62O43379 1518 aa32.11■■■□□ 2.73
PTPN7-209ENST00000477554 PRDM2Q13029 1718 aa32.09■■■□□ 2.73
PTPN7-209ENST00000477554 URB2Q14146 1524 aaKnown RBP32.02■■■□□ 2.72
PTPN7-209ENST00000477554 DNAJC5Q9H3Z4 198 aa31.74■■■□□ 2.67
PTPN7-209ENST00000477554 TOPBP1Q92547 1522 aa31.73■■■□□ 2.67
PTPN7-209ENST00000477554 DNMBPQ6XZF7 1577 aa31.63■■■□□ 2.65
PTPN7-209ENST00000477554 ZNF608Q9ULD9 1512 aaPredicted RBP31.55■■■□□ 2.64
PTPN7-209ENST00000477554 ABCC8Q09428 1581 aa31.51■■■□□ 2.63
PTPN7-209ENST00000477554 CUX1P39880 1505 aa31.49■■■□□ 2.63
PTPN7-209ENST00000477554 IFT140Q96RY7 1462 aa31.48■■■□□ 2.63
PTPN7-209ENST00000477554 POLA1P09884 1462 aaPredicted RBP31.45■■■□□ 2.63
PTPN7-209ENST00000477554 TARBP1Q13395 1621 aaKnown RBP31.42■■■□□ 2.62
PTPN7-209ENST00000477554 RAD54L2Q9Y4B4 1467 aa31.41■■■□□ 2.62
PTPN7-209ENST00000477554 FGD5Q6ZNL6 1462 aa31.35■■■□□ 2.61
PTPN7-209ENST00000477554 EIF4G3O43432 1585 aaKnown RBP31.34■■■□□ 2.61
PTPN7-209ENST00000477554 AQRO60306 1485 aaKnown RBP eCLIP31.31■■■□□ 2.63e-7■■■■■ 30.8
PTPN7-209ENST00000477554 SOGA1O94964 1423 aa31.27■■■□□ 2.6
PTPN7-209ENST00000477554 TDRD9Q8NDG6 1382 aaKnown RBP31.21■■■□□ 2.59
PTPN7-209ENST00000477554 SYNJ1O43426 1573 aa31.17■■■□□ 2.58
PTPN7-209ENST00000477554 WDR97A6NE52 1622 aa31.13■■■□□ 2.57
PTPN7-209ENST00000477554 WRNQ14191 1432 aaPredicted RBP eCLIP31.1■■■□□ 2.57
PTPN7-209ENST00000477554 BIVM-ERCC5R4GMW8 1640 aa31.08■■■□□ 2.57
PTPN7-209ENST00000477554 TOP2BQ02880 1626 aa31.07■■■□□ 2.56
PTPN7-209ENST00000477554 OSCARQ8IYS5 282 aa31.06■■■□□ 2.56
PTPN7-209ENST00000477554 CHD1O14646 1710 aa31.02■■■□□ 2.56
PTPN7-209ENST00000477554 ABCA10Q8WWZ4 1543 aa30.98■■■□□ 2.55
PTPN7-209ENST00000477554 SNAPC4Q5SXM2 1469 aa30.98■■■□□ 2.55
PTPN7-209ENST00000477554 ABCA5Q8WWZ7 1642 aa30.93■■■□□ 2.54
PTPN7-209ENST00000477554 PBRM1Q86U86 1689 aa30.92■■■□□ 2.54
PTPN7-209ENST00000477554 GAPVD1Q14C86 1478 aa30.91■■■□□ 2.54
PTPN7-209ENST00000477554 FBLN2P98095 1184 aa30.9■■■□□ 2.54
PTPN7-209ENST00000477554 GRIN2BQ13224 1484 aa30.89■■■□□ 2.54
PTPN7-209ENST00000477554 MAGI1Q96QZ7 1491 aaPredicted RBP30.81■■■□□ 2.52
PTPN7-209ENST00000477554 SYNJ2O15056 1496 aa30.73■■■□□ 2.51
PTPN7-209ENST00000477554 RIMBP3CA6NJZ7 1639 aa30.73■■■□□ 2.51
PTPN7-209ENST00000477554 RIMBP3BA6NNM3 1639 aa30.73■■■□□ 2.51
PTPN7-209ENST00000477554 RIMBP3Q9UFD9 1639 aa30.73■■■□□ 2.51
PTPN7-209ENST00000477554 CHMP7Q8WUX9 453 aaPredicted RBP30.72■■■□□ 2.51
PTPN7-209ENST00000477554 TRIM41Q8WV44 630 aa30.7■■■□□ 2.5
PTPN7-209ENST00000477554 ARHGEF11O15085 1522 aa30.66■■■□□ 2.5
PTPN7-209ENST00000477554 ADAMTS12P58397 1594 aa30.65■■■□□ 2.5
PTPN7-209ENST00000477554 CLASP1Q7Z460 1538 aa30.63■■■□□ 2.49
PTPN7-209ENST00000477554 ERICH3Q5RHP9 1530 aa30.57■■■□□ 2.48
PTPN7-209ENST00000477554 GRIN2AQ12879 1464 aa30.54■■■□□ 2.48
PTPN7-209ENST00000477554 FHAD1B1AJZ9 1412 aa30.5■■■□□ 2.47
PTPN7-209ENST00000477554 CEP170Q5SW79 1584 aa30.49■■■□□ 2.47
PTPN7-209ENST00000477554 ARAP1Q96P48 1450 aa30.45■■■□□ 2.46
PTPN7-209ENST00000477554 NUP160Q12769 1436 aa30.41■■■□□ 2.46
PTPN7-209ENST00000477554 IGF1RP08069 1367 aa30.41■■■□□ 2.46
PTPN7-209ENST00000477554 KIF27Q86VH2 1401 aa30.41■■■□□ 2.46
PTPN7-209ENST00000477554 CYB5RLQ6IPT4 315 aa30.39■■■□□ 2.46
PTPN7-209ENST00000477554 RUSC2Q8N2Y8 1516 aa30.35■■■□□ 2.45
PTPN7-209ENST00000477554 ERCC6L2Q5T890 1561 aa30.35■■■□□ 2.45
PTPN7-209ENST00000477554 CUL7Q14999 1698 aa30.25■■■□□ 2.43
PTPN7-209ENST00000477554 SHROOM2Q13796 1616 aa30.23■■■□□ 2.43
PTPN7-209ENST00000477554 CARMIL1Q5VZK9 1371 aa30.18■■■□□ 2.42
Retrieved 100 of 20,778 RNA–protein pairs in 74.5 ms