RNA–Protein interactions for RNA: ENST00000557400.5

NEDD1-210, Transcript of neural precursor cell expressed, developmentally down-regulated 1, humanhuman

TSL 5

Gene NEDD1, Length 604 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD1-210ENST00000557400 NISCHQ9Y2I1 1504 aa43.05■■■■■ 4.48
NEDD1-210ENST00000557400 ABCC9O60706 1549 aa38.8■■■■□ 3.8
NEDD1-210ENST00000557400 CCDC180Q9P1Z9 1646 aa38.62■■■■□ 3.77
NEDD1-210ENST00000557400 RB1CC1Q8TDY2 1594 aa36.87■■■■□ 3.49
NEDD1-210ENST00000557400 NACADO15069 1562 aa36.6■■■■□ 3.45
NEDD1-210ENST00000557400 DNAJC5BQ9UF47 199 aa36.52■■■■□ 3.44
NEDD1-210ENST00000557400 DCAF8L2P0C7V8 631 aa36.39■■■■□ 3.42
NEDD1-210ENST00000557400 PABPN1Q86U42 306 aaKnown RBP eCLIP36.13■■■■□ 3.37
NEDD1-210ENST00000557400 MYO15BQ96JP2 1530 aa36.08■■■■□ 3.37
NEDD1-210ENST00000557400 UNC13AQ9UPW8 1703 aa35.88■■■■□ 3.33
NEDD1-210ENST00000557400 BICRAQ9NZM4 1560 aa35.78■■■■□ 3.32
NEDD1-210ENST00000557400 ZCCHC6Q5VYS8 1495 aaKnown RBP35.67■■■■□ 3.3
NEDD1-210ENST00000557400 DCAF1Q9Y4B6 1507 aa35.57■■■■□ 3.28
NEDD1-210ENST00000557400 SHROOM4Q9ULL8 1493 aa35.36■■■■□ 3.25
NEDD1-210ENST00000557400 SCRIBQ14160 1630 aa35.2■■■■□ 3.23
NEDD1-210ENST00000557400 CC2D2AQ9P2K1 1620 aa35.01■■■■□ 3.19
NEDD1-210ENST00000557400 CECR2Q9BXF3 1484 aa34.98■■■■□ 3.19
NEDD1-210ENST00000557400 EIF4G1Q04637 1599 aaKnown RBP34.93■■■■□ 3.18
NEDD1-210ENST00000557400 NCAPD3P42695 1498 aa33.82■■■■□ 3.01
NEDD1-210ENST00000557400 ATAD2BQ9ULI0 1458 aa33.69■■■□□ 2.98
NEDD1-210ENST00000557400 DNAJC5Q9H3Z4 198 aa33.65■■■□□ 2.98
NEDD1-210ENST00000557400 SMARCA2P51531 1590 aa33.58■■■□□ 2.97
NEDD1-210ENST00000557400 SMARCA4P51532 1647 aa33.57■■■□□ 2.97
NEDD1-210ENST00000557400 HMGXB3Q12766 1538 aa33.53■■■□□ 2.96
NEDD1-210ENST00000557400 ERCC6Q03468 1493 aa33.53■■■□□ 2.96
NEDD1-210ENST00000557400 CUX2O14529 1486 aa33.52■■■□□ 2.96
NEDD1-210ENST00000557400 BAZ1AQ9NRL2 1556 aaPredicted RBP33.43■■■□□ 2.94
NEDD1-210ENST00000557400 BAZ1BQ9UIG0 1483 aaKnown RBP33.35■■■□□ 2.93
NEDD1-210ENST00000557400 NESP48681 1621 aa33.28■■■□□ 2.92
NEDD1-210ENST00000557400 PEG3Q9GZU2 1588 aa33.27■■■□□ 2.92
NEDD1-210ENST00000557400 MROH2BQ7Z745 1585 aa33.16■■■□□ 2.9
NEDD1-210ENST00000557400 LAMC3Q9Y6N6 1575 aa33.04■■■□□ 2.88
NEDD1-210ENST00000557400 THOC2Q8NI27 1593 aaKnown RBP32.95■■■□□ 2.86
NEDD1-210ENST00000557400 PDS5BQ9NTI5 1447 aa32.9■■■□□ 2.86
NEDD1-210ENST00000557400 CADPSQ9ULU8 1353 aa32.79■■■□□ 2.84
NEDD1-210ENST00000557400 KIF21AQ7Z4S6 1674 aa32.76■■■□□ 2.84
NEDD1-210ENST00000557400 WIZO95785 1651 aa32.69■■■□□ 2.82
NEDD1-210ENST00000557400 MRC2Q9UBG0 1479 aa32.61■■■□□ 2.81
NEDD1-210ENST00000557400 WDR62O43379 1518 aa32.51■■■□□ 2.8
NEDD1-210ENST00000557400 RSF1Q96T23 1441 aaPredicted RBP32.46■■■□□ 2.79
NEDD1-210ENST00000557400 CEP164Q9UPV0 1460 aa32.45■■■□□ 2.79
NEDD1-210ENST00000557400 FANCD2Q9BXW9 1451 aa32.41■■■□□ 2.78
NEDD1-210ENST00000557400 CFTRP13569 1480 aa32.39■■■□□ 2.78
NEDD1-210ENST00000557400 TOP2AP11388 1531 aaKnown RBP32.34■■■□□ 2.77
NEDD1-210ENST00000557400 URB2Q14146 1524 aaKnown RBP32.13■■■□□ 2.73
NEDD1-210ENST00000557400 TRIM41Q8WV44 630 aa32.11■■■□□ 2.73
NEDD1-210ENST00000557400 OSCARQ8IYS5 282 aa31.98■■■□□ 2.71
NEDD1-210ENST00000557400 CCDC88BA6NC98 1476 aa31.97■■■□□ 2.71
NEDD1-210ENST00000557400 PRDM2Q13029 1718 aa31.87■■■□□ 2.69
NEDD1-210ENST00000557400 IFT140Q96RY7 1462 aa31.81■■■□□ 2.68
NEDD1-210ENST00000557400 TOPBP1Q92547 1522 aa31.76■■■□□ 2.68
NEDD1-210ENST00000557400 ZNF608Q9ULD9 1512 aaPredicted RBP31.75■■■□□ 2.67
NEDD1-210ENST00000557400 ABCC8Q09428 1581 aa31.7■■■□□ 2.67
NEDD1-210ENST00000557400 DNMBPQ6XZF7 1577 aa31.62■■■□□ 2.65
NEDD1-210ENST00000557400 EIF4G3O43432 1585 aaKnown RBP31.54■■■□□ 2.64
NEDD1-210ENST00000557400 RIMBP3CA6NJZ7 1639 aa31.5■■■□□ 2.63
NEDD1-210ENST00000557400 RIMBP3BA6NNM3 1639 aa31.5■■■□□ 2.63
NEDD1-210ENST00000557400 RIMBP3Q9UFD9 1639 aa31.5■■■□□ 2.63
NEDD1-210ENST00000557400 AQRO60306 1485 aaKnown RBP eCLIP31.46■■■□□ 2.63
NEDD1-210ENST00000557400 TARBP1Q13395 1621 aaKnown RBP31.46■■■□□ 2.63
NEDD1-210ENST00000557400 POLA1P09884 1462 aaPredicted RBP31.45■■■□□ 2.62
NEDD1-210ENST00000557400 ARHGEF11O15085 1522 aa31.44■■■□□ 2.62
NEDD1-210ENST00000557400 RAD54L2Q9Y4B4 1467 aa31.32■■■□□ 2.6
NEDD1-210ENST00000557400 SOGA1O94964 1423 aa31.31■■■□□ 2.6
NEDD1-210ENST00000557400 FBLN2P98095 1184 aa31.29■■■□□ 2.6
NEDD1-210ENST00000557400 TDRD9Q8NDG6 1382 aaKnown RBP31.26■■■□□ 2.59
NEDD1-210ENST00000557400 CHD1O14646 1710 aa31.26■■■□□ 2.59
NEDD1-210ENST00000557400 CYB5RLQ6IPT4 315 aa31.23■■■□□ 2.59
NEDD1-210ENST00000557400 FGD5Q6ZNL6 1462 aa31.22■■■□□ 2.59
NEDD1-210ENST00000557400 CUX1P39880 1505 aa31.16■■■□□ 2.58
NEDD1-210ENST00000557400 WDR97A6NE52 1622 aa31.15■■■□□ 2.58
NEDD1-210ENST00000557400 SNAPC4Q5SXM2 1469 aa31.14■■■□□ 2.57
NEDD1-210ENST00000557400 ARAP1Q96P48 1450 aa31.13■■■□□ 2.57
NEDD1-210ENST00000557400 MAGI1Q96QZ7 1491 aaPredicted RBP31.07■■■□□ 2.56
NEDD1-210ENST00000557400 CHMP7Q8WUX9 453 aaPredicted RBP31.06■■■□□ 2.56
NEDD1-210ENST00000557400 GRIN2BQ13224 1484 aa31.06■■■□□ 2.56
NEDD1-210ENST00000557400 CLASP1Q7Z460 1538 aa30.99■■■□□ 2.55
NEDD1-210ENST00000557400 SYNJ1O43426 1573 aa30.96■■■□□ 2.55
NEDD1-210ENST00000557400 SYNJ2O15056 1496 aa30.96■■■□□ 2.55
NEDD1-210ENST00000557400 TRHP20396 242 aaPredicted RBP30.93■■■□□ 2.54
NEDD1-210ENST00000557400 SUPT5HO00267 1087 aaKnown RBP30.92■■■□□ 2.54
NEDD1-210ENST00000557400 GAPVD1Q14C86 1478 aa30.91■■■□□ 2.54
NEDD1-210ENST00000557400 ABCA10Q8WWZ4 1543 aa30.87■■■□□ 2.53
NEDD1-210ENST00000557400 PBRM1Q86U86 1689 aa30.8■■■□□ 2.52
NEDD1-210ENST00000557400 ABCA5Q8WWZ7 1642 aa30.79■■■□□ 2.52
NEDD1-210ENST00000557400 WRNQ14191 1432 aaPredicted RBP eCLIP30.75■■■□□ 2.51
NEDD1-210ENST00000557400 GRIN2AQ12879 1464 aa30.64■■■□□ 2.5
NEDD1-210ENST00000557400 TOP2BQ02880 1626 aa30.61■■■□□ 2.49
NEDD1-210ENST00000557400 BIVM-ERCC5R4GMW8 1640 aa30.58■■■□□ 2.49
NEDD1-210ENST00000557400 ADAMTS12P58397 1594 aa30.58■■■□□ 2.49
NEDD1-210ENST00000557400 NUP160Q12769 1436 aa30.56■■■□□ 2.48
NEDD1-210ENST00000557400 FHAD1B1AJZ9 1412 aa30.54■■■□□ 2.48
NEDD1-210ENST00000557400 CEP170Q5SW79 1584 aa30.5■■■□□ 2.47
NEDD1-210ENST00000557400 ERCC6L2Q5T890 1561 aa30.48■■■□□ 2.47
NEDD1-210ENST00000557400 ERICH3Q5RHP9 1530 aa30.47■■■□□ 2.47
NEDD1-210ENST00000557400 SHROOM2Q13796 1616 aa30.37■■■□□ 2.45
NEDD1-210ENST00000557400 PRG4Q92954 1404 aaPredicted RBP30.27■■■□□ 2.44
NEDD1-210ENST00000557400 JPH4Q96JJ6 628 aa30.25■■■□□ 2.43
NEDD1-210ENST00000557400 RUSC2Q8N2Y8 1516 aa30.16■■■□□ 2.42
NEDD1-210ENST00000557400 AEBP2Q6ZN18 517 aaPredicted RBP30.11■■■□□ 2.41
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms