RNA–Protein interactions for RNA: ENST00000557644.5

NEDD1-213, Transcript of neural precursor cell expressed, developmentally down-regulated 1, humanhuman

TSL 1 (best) BASIC

Gene NEDD1, Length 2,367 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD1-213ENST00000557644 NISCHQ9Y2I1 1504 aa36.32■■■■□ 3.4
NEDD1-213ENST00000557644 CCDC180Q9P1Z9 1646 aa32■■■□□ 2.71
NEDD1-213ENST00000557644 ABCC9O60706 1549 aa31.06■■■□□ 2.56
NEDD1-213ENST00000557644 ZCCHC6Q5VYS8 1495 aaKnown RBP30.34■■■□□ 2.45
NEDD1-213ENST00000557644 DCAF8L2P0C7V8 631 aa30.3■■■□□ 2.44
NEDD1-213ENST00000557644 NACADO15069 1562 aa30.02■■■□□ 2.4
NEDD1-213ENST00000557644 DCAF1Q9Y4B6 1507 aa30■■■□□ 2.39
NEDD1-213ENST00000557644 RB1CC1Q8TDY2 1594 aa29.96■■■□□ 2.39
NEDD1-213ENST00000557644 MYO15BQ96JP2 1530 aa29.95■■■□□ 2.38
NEDD1-213ENST00000557644 SCRIBQ14160 1630 aa29.36■■■□□ 2.29
NEDD1-213ENST00000557644 UNC13AQ9UPW8 1703 aa29.3■■■□□ 2.28
NEDD1-213ENST00000557644 PABPN1Q86U42 306 aaKnown RBP eCLIP29.16■■■□□ 2.26
NEDD1-213ENST00000557644 SHROOM4Q9ULL8 1493 aa29.1■■■□□ 2.25
NEDD1-213ENST00000557644 BICRAQ9NZM4 1560 aa29.1■■■□□ 2.25
NEDD1-213ENST00000557644 CECR2Q9BXF3 1484 aa28.32■■■□□ 2.12
NEDD1-213ENST00000557644 EIF4G1Q04637 1599 aaKnown RBP28.28■■■□□ 2.12
NEDD1-213ENST00000557644 DNAJC5BQ9UF47 199 aa28.19■■■□□ 2.1
NEDD1-213ENST00000557644 BAZ1AQ9NRL2 1556 aaPredicted RBP28.09■■■□□ 2.09
NEDD1-213ENST00000557644 SMARCA4P51532 1647 aa28.08■■■□□ 2.09
NEDD1-213ENST00000557644 CC2D2AQ9P2K1 1620 aa28.07■■■□□ 2.08
NEDD1-213ENST00000557644 MROH2BQ7Z745 1585 aa28.04■■■□□ 2.08
NEDD1-213ENST00000557644 RSF1Q96T23 1441 aaPredicted RBP27.88■■■□□ 2.05
NEDD1-213ENST00000557644 ATAD2BQ9ULI0 1458 aa27.84■■■□□ 2.05
NEDD1-213ENST00000557644 SMARCA2P51531 1590 aa27.77■■■□□ 2.04
NEDD1-213ENST00000557644 PEG3Q9GZU2 1588 aa27.76■■■□□ 2.03
NEDD1-213ENST00000557644 WIZO95785 1651 aa27.75■■■□□ 2.03
NEDD1-213ENST00000557644 NCAPD3P42695 1498 aa27.73■■■□□ 2.03
NEDD1-213ENST00000557644 BAZ1BQ9UIG0 1483 aaKnown RBP27.62■■■□□ 2.01
NEDD1-213ENST00000557644 HMGXB3Q12766 1538 aa27.6■■■□□ 2.01
NEDD1-213ENST00000557644 SUPT5HO00267 1087 aaKnown RBP27.58■■■□□ 2.01
NEDD1-213ENST00000557644 TOP2AP11388 1531 aaKnown RBP27.43■■□□□ 1.98
NEDD1-213ENST00000557644 CCDC88BA6NC98 1476 aa27.17■■□□□ 1.94
NEDD1-213ENST00000557644 NESP48681 1621 aa27.03■■□□□ 1.92
NEDD1-213ENST00000557644 CADPSQ9ULU8 1353 aa26.98■■□□□ 1.91
NEDD1-213ENST00000557644 LAMC3Q9Y6N6 1575 aa26.9■■□□□ 1.9
NEDD1-213ENST00000557644 CFTRP13569 1480 aa26.9■■□□□ 1.9
NEDD1-213ENST00000557644 PDS5BQ9NTI5 1447 aa26.74■■□□□ 1.87
NEDD1-213ENST00000557644 ERCC6Q03468 1493 aa26.7■■□□□ 1.86
NEDD1-213ENST00000557644 FANCD2Q9BXW9 1451 aa26.67■■□□□ 1.86
NEDD1-213ENST00000557644 KIF21AQ7Z4S6 1674 aa26.64■■□□□ 1.86
NEDD1-213ENST00000557644 PRDM2Q13029 1718 aa26.63■■□□□ 1.85
NEDD1-213ENST00000557644 CEP164Q9UPV0 1460 aa26.58■■□□□ 1.84
NEDD1-213ENST00000557644 MRC2Q9UBG0 1479 aa26.44■■□□□ 1.82
NEDD1-213ENST00000557644 THOC2Q8NI27 1593 aaKnown RBP26.44■■□□□ 1.82
NEDD1-213ENST00000557644 URB2Q14146 1524 aaKnown RBP26.39■■□□□ 1.82
NEDD1-213ENST00000557644 ABCC8Q09428 1581 aa26.34■■□□□ 1.81
NEDD1-213ENST00000557644 WDR62O43379 1518 aa26.33■■□□□ 1.81
NEDD1-213ENST00000557644 TOPBP1Q92547 1522 aa26.29■■□□□ 1.8
NEDD1-213ENST00000557644 CUX1P39880 1505 aa26.27■■□□□ 1.8
NEDD1-213ENST00000557644 DNMBPQ6XZF7 1577 aa26.26■■□□□ 1.79
NEDD1-213ENST00000557644 WRNQ14191 1432 aaPredicted RBP eCLIP26.26■■□□□ 1.79
NEDD1-213ENST00000557644 CUX2O14529 1486 aa26.2■■□□□ 1.78
NEDD1-213ENST00000557644 SYNJ1O43426 1573 aa26.18■■□□□ 1.78
NEDD1-213ENST00000557644 TOP2BQ02880 1626 aa26.11■■□□□ 1.77
NEDD1-213ENST00000557644 POLA1P09884 1462 aaPredicted RBP26.11■■□□□ 1.77
NEDD1-213ENST00000557644 FGD5Q6ZNL6 1462 aa26.11■■□□□ 1.77
NEDD1-213ENST00000557644 BIVM-ERCC5R4GMW8 1640 aa26.08■■□□□ 1.77
NEDD1-213ENST00000557644 RAD54L2Q9Y4B4 1467 aa26.03■■□□□ 1.76
NEDD1-213ENST00000557644 SOGA1O94964 1423 aa26.01■■□□□ 1.75
NEDD1-213ENST00000557644 IFT140Q96RY7 1462 aa25.98■■□□□ 1.75
NEDD1-213ENST00000557644 TRIM41Q8WV44 630 aa25.97■■□□□ 1.75
NEDD1-213ENST00000557644 CHIC1Q5VXU3 224 aa25.96■■□□□ 1.75
NEDD1-213ENST00000557644 TARBP1Q13395 1621 aaKnown RBP25.95■■□□□ 1.74
NEDD1-213ENST00000557644 ZNF608Q9ULD9 1512 aaPredicted RBP25.91■■□□□ 1.74
NEDD1-213ENST00000557644 TDRD9Q8NDG6 1382 aaKnown RBP25.86■■□□□ 1.73
NEDD1-213ENST00000557644 ABCA10Q8WWZ4 1543 aa25.84■■□□□ 1.73
NEDD1-213ENST00000557644 AQRO60306 1485 aaKnown RBP eCLIP25.82■■□□□ 1.72
NEDD1-213ENST00000557644 WDR97A6NE52 1622 aa25.81■■□□□ 1.72
NEDD1-213ENST00000557644 EIF4G3O43432 1585 aaKnown RBP25.77■■□□□ 1.72
NEDD1-213ENST00000557644 GAPVD1Q14C86 1478 aa25.7■■□□□ 1.71
NEDD1-213ENST00000557644 ABCA5Q8WWZ7 1642 aa25.69■■□□□ 1.7
NEDD1-213ENST00000557644 KIF27Q86VH2 1401 aa25.65■■□□□ 1.7
NEDD1-213ENST00000557644 RUSC2Q8N2Y8 1516 aa25.65■■□□□ 1.7
NEDD1-213ENST00000557644 GRIN2BQ13224 1484 aa25.62■■□□□ 1.69
NEDD1-213ENST00000557644 PBRM1Q86U86 1689 aa25.58■■□□□ 1.68
NEDD1-213ENST00000557644 SNAPC4Q5SXM2 1469 aa25.56■■□□□ 1.68
NEDD1-213ENST00000557644 IGF1RP08069 1367 aa25.54■■□□□ 1.68
NEDD1-213ENST00000557644 ERICH3Q5RHP9 1530 aa25.52■■□□□ 1.68
NEDD1-213ENST00000557644 FAM9AQ8IZU1 332 aaPredicted RBP25.51■■□□□ 1.67
NEDD1-213ENST00000557644 MAGI1Q96QZ7 1491 aaPredicted RBP25.49■■□□□ 1.67
NEDD1-213ENST00000557644 FBLN2P98095 1184 aa25.46■■□□□ 1.67
NEDD1-213ENST00000557644 ADAMTS12P58397 1594 aa25.42■■□□□ 1.66
NEDD1-213ENST00000557644 CHMP7Q8WUX9 453 aaPredicted RBP25.41■■□□□ 1.66
NEDD1-213ENST00000557644 SYNJ2O15056 1496 aa25.41■■□□□ 1.66
NEDD1-213ENST00000557644 FHAD1B1AJZ9 1412 aa25.4■■□□□ 1.66
NEDD1-213ENST00000557644 EEA1Q15075 1411 aa25.4■■□□□ 1.66
NEDD1-213ENST00000557644 CSRNP3Q8WYN3 585 aa25.39■■□□□ 1.66
NEDD1-213ENST00000557644 CARMIL1Q5VZK9 1371 aa25.38■■□□□ 1.65
NEDD1-213ENST00000557644 CUL7Q14999 1698 aa25.35■■□□□ 1.65
NEDD1-213ENST00000557644 CHD1O14646 1710 aa25.35■■□□□ 1.65
NEDD1-213ENST00000557644 GRIN2AQ12879 1464 aa25.31■■□□□ 1.64
NEDD1-213ENST00000557644 PRXQ9BXM0 1461 aa25.29■■□□□ 1.64
NEDD1-213ENST00000557644 OSCARQ8IYS5 282 aa25.26■■□□□ 1.63
NEDD1-213ENST00000557644 RAPGEF2Q9Y4G8 1499 aa25.25■■□□□ 1.63
NEDD1-213ENST00000557644 EHMT2Q96KQ7 1210 aa25.2■■□□□ 1.63
NEDD1-213ENST00000557644 CEP170Q5SW79 1584 aa25.18■■□□□ 1.62
NEDD1-213ENST00000557644 NUP160Q12769 1436 aa25.17■■□□□ 1.62
NEDD1-213ENST00000557644 KIF21BO75037 1637 aa25.12■■□□□ 1.61
NEDD1-213ENST00000557644 CLASP1Q7Z460 1538 aa25.08■■□□□ 1.61
NEDD1-213ENST00000557644 GOLGA3Q08378 1498 aa25.04■■□□□ 1.6
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms