RNA–Protein interactions for RNA: ENST00000557454.1

NEDD1-211, Transcript of neural precursor cell expressed, developmentally down-regulated 1, humanhuman

TSL 4

Gene NEDD1, Length 564 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD1-211ENST00000557454 NISCHQ9Y2I1 1504 aa24.83■■□□□ 1.57
NEDD1-211ENST00000557454 ABCC9O60706 1549 aa23.66■■□□□ 1.38
NEDD1-211ENST00000557454 DNAJC5BQ9UF47 199 aa23.04■■□□□ 1.28
NEDD1-211ENST00000557454 CCDC180Q9P1Z9 1646 aa22.63■■□□□ 1.21
NEDD1-211ENST00000557454 RB1CC1Q8TDY2 1594 aa22.03■■□□□ 1.12
NEDD1-211ENST00000557454 PABPN1Q86U42 306 aaKnown RBP eCLIP21.89■■□□□ 1.09
NEDD1-211ENST00000557454 DNAJC5Q9H3Z4 198 aa21.8■■□□□ 1.08
NEDD1-211ENST00000557454 NACADO15069 1562 aa21.64■■□□□ 1.05
NEDD1-211ENST00000557454 UNC13AQ9UPW8 1703 aa21.47■■□□□ 1.03
NEDD1-211ENST00000557454 BICRAQ9NZM4 1560 aa21.46■■□□□ 1.03
NEDD1-211ENST00000557454 CECR2Q9BXF3 1484 aa21.4■■□□□ 1.02
NEDD1-211ENST00000557454 DCAF8L2P0C7V8 631 aa21.39■■□□□ 1.01
NEDD1-211ENST00000557454 CC2D2AQ9P2K1 1620 aa21.28■■□□□ 1
NEDD1-211ENST00000557454 SHROOM4Q9ULL8 1493 aa21.04■□□□□ 0.96
NEDD1-211ENST00000557454 MYO15BQ96JP2 1530 aa21.02■□□□□ 0.96
NEDD1-211ENST00000557454 EIF4G1Q04637 1599 aaKnown RBP21.01■□□□□ 0.95
NEDD1-211ENST00000557454 AEBP2Q6ZN18 517 aaPredicted RBP20.88■□□□□ 0.93
NEDD1-211ENST00000557454 CUX2O14529 1486 aa20.74■□□□□ 0.91
NEDD1-211ENST00000557454 SCRIBQ14160 1630 aa20.65■□□□□ 0.9
NEDD1-211ENST00000557454 CHIC1Q5VXU3 224 aa20.6■□□□□ 0.89
NEDD1-211ENST00000557454 TRIM41Q8WV44 630 aa20.51■□□□□ 0.87
NEDD1-211ENST00000557454 ERCC6Q03468 1493 aa20.49■□□□□ 0.87
NEDD1-211ENST00000557454 DCAF1Q9Y4B6 1507 aa20.41■□□□□ 0.86
NEDD1-211ENST00000557454 ZCCHC6Q5VYS8 1495 aaKnown RBP20.4■□□□□ 0.86
NEDD1-211ENST00000557454 NESP48681 1621 aa20.05■□□□□ 0.8
NEDD1-211ENST00000557454 NCAPD3P42695 1498 aa20.02■□□□□ 0.8
NEDD1-211ENST00000557454 THOC2Q8NI27 1593 aaKnown RBP20.01■□□□□ 0.79
NEDD1-211ENST00000557454 SMARCA2P51531 1590 aa19.86■□□□□ 0.77
NEDD1-211ENST00000557454 ATAD2BQ9ULI0 1458 aa19.85■□□□□ 0.77
NEDD1-211ENST00000557454 HMGXB3Q12766 1538 aa19.78■□□□□ 0.76
NEDD1-211ENST00000557454 KIF21AQ7Z4S6 1674 aa19.7■□□□□ 0.74
NEDD1-211ENST00000557454 LAMC3Q9Y6N6 1575 aa19.69■□□□□ 0.74
NEDD1-211ENST00000557454 BAZ1AQ9NRL2 1556 aaPredicted RBP19.66■□□□□ 0.74
NEDD1-211ENST00000557454 PDS5BQ9NTI5 1447 aa19.63■□□□□ 0.73
NEDD1-211ENST00000557454 OSCARQ8IYS5 282 aa19.62■□□□□ 0.73
NEDD1-211ENST00000557454 BAZ1BQ9UIG0 1483 aaKnown RBP19.6■□□□□ 0.73
NEDD1-211ENST00000557454 SMARCA4P51532 1647 aa19.56■□□□□ 0.72
NEDD1-211ENST00000557454 MRC2Q9UBG0 1479 aa19.54■□□□□ 0.72
NEDD1-211ENST00000557454 WDR62O43379 1518 aa19.52■□□□□ 0.72
NEDD1-211ENST00000557454 RIMBP3CA6NJZ7 1639 aa19.48■□□□□ 0.71
NEDD1-211ENST00000557454 RIMBP3BA6NNM3 1639 aa19.48■□□□□ 0.71
NEDD1-211ENST00000557454 RIMBP3Q9UFD9 1639 aa19.48■□□□□ 0.71
NEDD1-211ENST00000557454 CADPSQ9ULU8 1353 aa19.38■□□□□ 0.69
NEDD1-211ENST00000557454 PEG3Q9GZU2 1588 aa19.36■□□□□ 0.69
NEDD1-211ENST00000557454 TRHP20396 242 aaPredicted RBP19.35■□□□□ 0.69
NEDD1-211ENST00000557454 ARHGEF11O15085 1522 aa19.35■□□□□ 0.69
NEDD1-211ENST00000557454 CEP164Q9UPV0 1460 aa19.28■□□□□ 0.68
NEDD1-211ENST00000557454 CYB5RLQ6IPT4 315 aa19.26■□□□□ 0.67
NEDD1-211ENST00000557454 FANCD2Q9BXW9 1451 aa19.18■□□□□ 0.66
NEDD1-211ENST00000557454 MROH2BQ7Z745 1585 aa19.15■□□□□ 0.66
NEDD1-211ENST00000557454 ARAP1Q96P48 1450 aa19.12■□□□□ 0.65
NEDD1-211ENST00000557454 URB2Q14146 1524 aaKnown RBP19.09■□□□□ 0.65
NEDD1-211ENST00000557454 ZNF608Q9ULD9 1512 aaPredicted RBP19.03■□□□□ 0.64
NEDD1-211ENST00000557454 CFTRP13569 1480 aa18.97■□□□□ 0.63
NEDD1-211ENST00000557454 IFT140Q96RY7 1462 aa18.92■□□□□ 0.62
NEDD1-211ENST00000557454 RSF1Q96T23 1441 aaPredicted RBP18.9■□□□□ 0.62
NEDD1-211ENST00000557454 WIZO95785 1651 aa18.84■□□□□ 0.61
NEDD1-211ENST00000557454 EIF4G3O43432 1585 aaKnown RBP18.84■□□□□ 0.61
NEDD1-211ENST00000557454 ILDR1Q86SU0 546 aaPredicted RBP18.83■□□□□ 0.6
NEDD1-211ENST00000557454 CHD1O14646 1710 aa18.83■□□□□ 0.6
NEDD1-211ENST00000557454 FBLN2P98095 1184 aa18.79■□□□□ 0.6
NEDD1-211ENST00000557454 AQRO60306 1485 aaKnown RBP eCLIP18.71■□□□□ 0.59
NEDD1-211ENST00000557454 TOPBP1Q92547 1522 aa18.7■□□□□ 0.58
NEDD1-211ENST00000557454 CLASP1Q7Z460 1538 aa18.64■□□□□ 0.57
NEDD1-211ENST00000557454 PRDM2Q13029 1718 aa18.58■□□□□ 0.57
NEDD1-211ENST00000557454 TARBP1Q13395 1621 aaKnown RBP18.58■□□□□ 0.56
NEDD1-211ENST00000557454 TOP2AP11388 1531 aaKnown RBP18.55■□□□□ 0.56
NEDD1-211ENST00000557454 ABCC8Q09428 1581 aa18.53■□□□□ 0.56
NEDD1-211ENST00000557454 DNMBPQ6XZF7 1577 aa18.53■□□□□ 0.56
NEDD1-211ENST00000557454 GAPVD1Q14C86 1478 aa18.52■□□□□ 0.56
NEDD1-211ENST00000557454 SYNJ1O43426 1573 aa18.51■□□□□ 0.55
NEDD1-211ENST00000557454 SNAPC4Q5SXM2 1469 aa18.51■□□□□ 0.55
NEDD1-211ENST00000557454 CHMP7Q8WUX9 453 aaPredicted RBP18.47■□□□□ 0.55
NEDD1-211ENST00000557454 POLA1P09884 1462 aaPredicted RBP18.46■□□□□ 0.55
NEDD1-211ENST00000557454 TDRD9Q8NDG6 1382 aaKnown RBP18.46■□□□□ 0.55
NEDD1-211ENST00000557454 RAD54L2Q9Y4B4 1467 aa18.43■□□□□ 0.54
NEDD1-211ENST00000557454 KDM4FA0A1W2PPD8 638 aa18.41■□□□□ 0.54
NEDD1-211ENST00000557454 MAGI1Q96QZ7 1491 aaPredicted RBP18.38■□□□□ 0.53
NEDD1-211ENST00000557454 CCDC88BA6NC98 1476 aa18.35■□□□□ 0.53
NEDD1-211ENST00000557454 SYNJ2O15056 1496 aa18.34■□□□□ 0.53
NEDD1-211ENST00000557454 SOGA1O94964 1423 aa18.33■□□□□ 0.53
NEDD1-211ENST00000557454 ERCC6L2Q5T890 1561 aa18.31■□□□□ 0.52
NEDD1-211ENST00000557454 GRIN2BQ13224 1484 aa18.29■□□□□ 0.52
NEDD1-211ENST00000557454 KIF13AQ9H1H9 1805 aa18.29■□□□□ 0.52
NEDD1-211ENST00000557454 WDR97A6NE52 1622 aa18.28■□□□□ 0.52
NEDD1-211ENST00000557454 PHF23Q9BUL5 403 aaPredicted RBP18.22■□□□□ 0.51
NEDD1-211ENST00000557454 FGD5Q6ZNL6 1462 aa18.21■□□□□ 0.51
NEDD1-211ENST00000557454 FAM69CQ0P6D2 419 aa18.17■□□□□ 0.5
NEDD1-211ENST00000557454 CEP170Q5SW79 1584 aa18.16■□□□□ 0.5
NEDD1-211ENST00000557454 KDM6BO15054 1643 aa18.13■□□□□ 0.49
NEDD1-211ENST00000557454 ABCC10Q5T3U5 1492 aa18.13■□□□□ 0.49
NEDD1-211ENST00000557454 PBRM1Q86U86 1689 aa18.1■□□□□ 0.49
NEDD1-211ENST00000557454 HECW2Q9P2P5 1572 aa18.09■□□□□ 0.49
NEDD1-211ENST00000557454 DIP2BQ9P265 1576 aa18.06■□□□□ 0.48
NEDD1-211ENST00000557454 GRIN2AQ12879 1464 aa18.06■□□□□ 0.48
NEDD1-211ENST00000557454 CUX1P39880 1505 aa18.05■□□□□ 0.48
NEDD1-211ENST00000557454 NUP160Q12769 1436 aa18.05■□□□□ 0.48
NEDD1-211ENST00000557454 ADGRL1O94910 1474 aa18.04■□□□□ 0.48
NEDD1-211ENST00000557454 SHROOM2Q13796 1616 aa18.03■□□□□ 0.48
NEDD1-211ENST00000557454 FBXO41Q8TF61 875 aa18.02■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms